BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP000730	2,113,304	G→T	7.2%	H37N (CAT→AAT)	USA300HOU_1981 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	2,113,304	0	G	T	7.2%	699.8 / 7.2	239	H37N (CAT→AAT)	USA300HOU_1981	hypothetical protein
Reads supporting (aligned to +/- strand): ref base G (119/97); new base T (21/2); total (140/99)
Fisher's exact test for biased strand distribution p-value = 5.80e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.78e-01

Only 100 of 243 total aligned reads displayed.

AGGATGTTAGTCATTTTCCTTGTCCTCCTCATCAATTCCAGCCAATTCATACATAACGCTCTCCATACTTTTATCTTTTAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCTTTTAATTTCTTCAAAGATTCATTAATTTTCATTTTCCTGTTCCTCCTCATATTCAAGCTCTCT  >  CP000730/2113164‑2113443

aGGATGTTAGTCATTTTCCTTGTCCTCCTCATCAATTCCATCCAATTCATACATAACGCTCTCCATACTTTTATCTTTTAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATg                                                                                                                                             <  1:783211/141‑1 (MQ=255)

 ggATGTTGGTCATTTTCCTTGTCCTCCTCATCAATTCCAGCCAATTCATACATAACGCTCTCCATACTTTTATCTTTTAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATgg                                                                                                                                            <  2:308161/141‑1 (MQ=255)

   aTGTTAGTCACTTTCCTTGTCCTCCTCATCAATTCCAGCCAATTCATACATAACGCTCTCCATACTTTTATCTTTTAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTc                                                                                                                                          <  2:869460/141‑1 (MQ=255)

    tGTTAGTCATTTTCCTTGTCCTCCTCATCAATTCCAGCCAATTCATACATAACGCTCTCCATACTTTTATCTTTTAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGtgg                                                                                                                                         >  1:327036/1‑139 (MQ=255)

         gTCATTTTCCTTGTCCTCCTCATCAATTCCAGCCAATTCATACATAACGCTCTCCATACTTTTATCTTTTAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTa                                                                                                                                    >  1:723595/1‑141 (MQ=255)

           cagtttCCTGTTCCTCCTCATCAATTCCAGCCAATTCATACATAACGCTCTCCATACTTTTATCTTTTAAATCTTCTGACACGACTAACTTTAAAACATGATACGGGGGCATTA‑TTGTTTTTTCGTCATGGTCGATGTaaa                                                                                                                                  >  2:499544/4‑141 (MQ=255)

           cATTTTCCTTGTCCTCCTCATCAATTCCAGCCAATTCATACATAACGCTCTCCATACTTTTATCTTTTAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTaaa                                                                                                                                  <  2:492377/141‑1 (MQ=255)

           cATTTTCCTTGTCCTCCTCATCAATTCCAGCCAATTCATACATAACGCTCTCCATACTTTTATCTTTTAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTaaa                                                                                                                                  >  2:1084129/1‑141 (MQ=255)

           cATTTTCCTTGTCCTCCTCATCAATTCCAGCCAATTCATACATAAAGCTACAAAGACTTTTATATATTCCTACCATTGACACGAATACCTTAAAATCATGTAATTCTGTTATTA‑TTGTTTTTTCGTCATGGTCGGGGTaaa                                                                                                                                  >  1:808752/1‑141 (MQ=255)

             ttttCCTTGCCCTCCCCATCAATTCCAGCCAATTCCTGAATAACGCTCTCCATCCTTTTATCTTTTAGATCTTCTGATACGAATACCTTTAAATCATTGAATTCTGTAATTA‑TTTTTTTTTCGTCATGGTCGATGTAAAtt                                                                                                                                <  2:299395/141‑1 (MQ=255)

              tttCCTTGTCCTCCTCATCAATTCCAGCCAATTCATACATACCGCTCTCCATACTTTTATCTTTTAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAAttt                                                                                                                               <  2:603576/141‑1 (MQ=255)

                 ccTTGTCCTCCTCATCAATTCCAGCCAATTCATACATAACGCTCTCCATACTTTTATCTTTTAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTa                                                                                                                            >  1:630376/1‑141 (MQ=255)

                  cTTGTCCTCCTCATCAATTCCAGCCAATTCATACATAACGCTCTCCATACTTTTATCTTTTAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTACTTA‑TTGTTTTTTCGTCATGGTCGATGTGAATCTATAg                                                                                                                           >  1:135740/1‑141 (MQ=255)

                  cTTGTCCTCCTCATCAATTCCAGCCAATTCATACATAACGCTCTCCATACTTTTATCTTTTAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAg                                                                                                                           >  1:407224/1‑141 (MQ=255)

                     ggcctcctCATCAAGTCCAGCCAATTCATACATACCACCGTCCATACTATGTTTTGTTAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGt                                                                                                                        <  2:387360/139‑1 (MQ=255)

                      tcctccTCATCTATTCCAGCCAATTCATACATAACGCTCTCCATACTTTTATCTTTTAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTa                                                                                                                       <  2:1024632/141‑1 (MQ=255)

                      tcctccTCATCAATTCCAGCCAATTCATACATAACGCTCTCCATACTTTTATCTTTTAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAGATTTCTAGCGTa                                                                                                                       <  2:534079/141‑1 (MQ=255)

                              atcaATTCCAGCCAATTCATACATAACGCTCTCCATACTTTTATCTTTTAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGc                                                                                                               >  1:435802/1‑141 (MQ=255)

                               tcaATTCCAGCCAATTCATACATAACGCTCTCCATCCTTTTATCTTTTAACTCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCCGCt                                                                                                              >  2:617754/1‑141 (MQ=255)

                                caATTCCAGCCAATTCATACATAACGCTCTCCATACTTTTATCTTTTAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTa                                                                                                             <  1:1074977/141‑1 (MQ=255)

                                 aaTTCCAGCCAATTCATACATAACGCTCTCCATACTTTTATCTTTTAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTaa                                                                                                            >  1:344442/1‑141 (MQ=255)

                                    tCCAGCCAATTCATACATAACGCTCTCCATACTTTTATCTTTTAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAAtt                                                                                                         <  2:161546/141‑1 (MQ=255)

                                      cAGCCAATTCATACATAACGCTCTCCATACTTTTATCTTTTAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTaa                                                                                                       <  2:1095287/141‑1 (MQ=255)

                                       cgCCAATTCATACATAACGCTCTCCATACTTTTATCTTTTAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTaaa                                                                                                      <  1:118236/140‑1 (MQ=255)

                                       aGCCAATTCATACATAACGATCTCCATTGTTTTATCTTTTAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTaaa                                                                                                      <  1:197728/141‑1 (MQ=255)

                                        gCCAATTCATACATCACGCTCTCCATACTTTTATCTTTTAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTaaaa                                                                                                     <  1:906568/141‑1 (MQ=255)

                                             ttCATACATAACGCTCTCCATACTTTTATCTTTTAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTACTTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTATATTCAAAATAga                                                                                                >  2:865371/1‑140 (MQ=255)

                                                atacataACTCTCTCCATACTTTTATCTTTTAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGCTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCttt                                                                                             <  2:279884/141‑1 (MQ=255)

                                                  acataACGCTCTCCATACTTTTATCTTTTAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTAt                                                                                           >  1:70807/1‑141 (MQ=255)

                                                      aaCGCTCTCCATACTTTTATCTTTTAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTc                                                                                       <  1:64580/141‑1 (MQ=255)

                                                       aCGCTCTCCATACTTTTATCTTTTAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCa                                                                                      <  1:578953/141‑1 (MQ=255)

                                                           tctcCATACTTTTATCTTTTAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCAtttt                                                                                  >  2:972846/1‑141 (MQ=255)

                                                           tctcCATACTTTTATCTTTTAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCAtttt                                                                                  >  1:876404/1‑141 (MQ=255)

                                                            ctcCATACTTTTATCTTTTAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTTTTTTTTTTTTCTGTAAATTTCTAGCGTACCATCAGTTAACTTAGAAATAGCTTTATCTCCGttttt                                                                                 >  2:781958/1‑140 (MQ=255)

                                                             tcCATACTTTTATCTTTTAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCt                                                                                >  1:19255/1‑141 (MQ=255)

                                                              ccATACTTTTATCTTTTAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTTTTTTTTTTTGATGTAAATTTCTGGCGTACCGTCAGCTAAATTAAAATTAGCTTTATTTTAATTTTCtt                                                                               >  2:509553/1‑141 (MQ=255)

                                                              ccATACTTTTATCTTTTAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCtt                                                                               <  2:819638/141‑1 (MQ=255)

                                                               cATACTTTTATCTTTTAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCttt                                                                              >  1:350783/1‑141 (MQ=255)

                                                               cATACTTTTATCTTTTAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCttt                                                                              >  1:931966/1‑141 (MQ=255)

                                                                aTACTTTTATCTTTTAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCtttt                                                                             >  1:865033/1‑140 (MQ=255)

                                                                      ttATCTTTTAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTCTGTATCCt                                                                       >  1:560420/1‑141 (MQ=255)

                                                                         tCTTTTAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATTTTCATTTTCTTTGTATCCtttt                                                                    >  2:706731/1‑141 (MQ=255)

                                                                            tttACATCTTCTGACACGAATACCTTTAAATCATGCAACTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCAGCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCt                                                                 <  1:94016/141‑1 (MQ=255)

                                                                            tttAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTTGTTTTTTTTGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCt                                                                 >  2:732975/1‑141 (MQ=255)

                                                                             ttAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCGTGGTCGATGTACAGTTCTAGCGTACCATCAGCTAAATTAGAAATAGCTTTATCTTCATTTTCTTTGTATCCATTTTCtt                                                                >  2:903364/1‑141 (MQ=255)

                                                                             ttAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCtt                                                                >  1:292469/1‑141 (MQ=255)

                                                                              tAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCttt                                                               <  1:880320/141‑1 (MQ=255)

                                                                              tAAATCTTCTGACACGAATACCTTTAAATCAGGGAATTCT‑AATTCACCTACTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCttt                                                               <  1:520905/141‑1 (MQ=255)

                                                                               aaaTCTTCTGACACGGATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTGTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCtttt                                                              <  1:900801/141‑1 (MQ=255)

                                                                               aaaTCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCtttt                                                              >  1:299691/1‑141 (MQ=255)

                                                                               aaaTCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGAACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCtttt                                                              <  1:664744/141‑1 (MQ=255)

                                                                                    ttctGACCCGAATAGCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCTTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCTTTTAAttt                                                         <  2:191648/141‑1 (MQ=255)

                                                                                     tctGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTTTTTTTTTTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCTTTTAttttt                                                        >  2:554383/1‑140 (MQ=255)

                                                                                      ctGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCTTTTAATttct                                                       <  1:141997/141‑1 (MQ=255)

                                                                                         acacGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCTTTTACTTTCTTCa                                                    >  1:83238/1‑141 (MQ=255)

                                                                                         acacGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCTTTTAATTTCTTCa                                                    >  1:991390/1‑141 (MQ=255)

                                                                                          cacGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCTTTTAATTTCTTCaa                                                   >  2:943791/1‑141 (MQ=255)

                                                                                            cGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCTTTTAATTTCTTCAAAg                                                 >  1:970098/1‑141 (MQ=255)

                                                                                            cGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTAGCCTTTTTCTTTTAATTGCTTCaaaa                                                 >  1:499792/1‑140 (MQ=255)

                                                                                                 aCCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCTTTTAATTTTTTCAAAGATTCa                                            >  2:13921/1‑141 (MQ=255)

                                                                                                  ccTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTTTTTTTTTTTCTTCAATGATTcct                                           >  2:985673/1‑139 (MQ=255)

                                                                                                  ccTTTAAATCAGGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAGATTTCTAGCGTACCATCAGCTGAATTAAAAGTAGCTTTATCATCATGTTCTTTGTGTCCTTTTTCTTTTAGTTTCTTCACAGATGCAt                                           >  2:24471/1‑141 (MQ=255)

                                                                                                    tttAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCTTTTAATTTCTTCAAAGATTCATTa                                         >  2:1040480/1‑141 (MQ=255)

                                                                                                    tttAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCTTTTAATTTCTTCAAAGATTCATTa                                         <  2:635030/141‑1 (MQ=255)

                                                                                                     ttAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCAATACCGTTGTATCCTTTTTTTTTTAATTTTTTCAAAGATTCATTaa                                        >  2:433739/1‑141 (MQ=255)

                                                                                                      tAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTCCCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCTTTCAATTTCTTCAAAGATTCATTAat                                       <  2:792079/141‑1 (MQ=255)

                                                                                                      tAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCTTTTAATTTCTTCAAAGATTCATTAat                                       >  2:399721/1‑141 (MQ=255)

                                                                                                        aaTCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCTTTTAATTTCTTCAAAGATTCATTAattt                                     <  2:456933/141‑1 (MQ=255)

                                                                                                         aTCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCGTTTTCTTTGTATCCTTTTTCTTTTCATTGCTTCAAAGATTCATTAttttt                                    >  1:454462/1‑141 (MQ=255)

                                                                                                         aTCATGCAATTCTGTAATTT‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCTTTTAATTTCTTCAAAGATTCATTAatttt                                    <  2:149945/141‑1 (MQ=255)

                                                                                                          tCATGGAATTCTGTAATTA‑TTGTTTTTTTTTTTTTTTTTATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTTTTTTAATTTCTTCAAAGTTTTATTAtttttt                                   >  2:680364/1‑140 (MQ=255)

                                                                                                             tGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCTTTTCATTTCTTCAAAGACTCAttctttttcttt                                >  1:321690/1‑141 (MQ=255)

                                                                                                             tGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCTTTTAATTTCTTCAAAGATTCATTAattttcatt                                >  2:506039/1‑141 (MQ=255)

                                                                                                             tGGAATTCTGTAATTA‑TTGATTTCTGGGGGGTGCCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCATTTTTCTTTTAATTTCTTCAAAGATTCATTAattttcatt                                >  1:534618/1‑141 (MQ=255)

                                                                                                              ggAATTCTGTAATTA‑TTGTTTTTTCGTCATTGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTTTTTTATTTTCTTTAAAGATTCATTAgttttctttt                               >  2:829047/1‑141 (MQ=255)

                                                                                                              ggAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCTTTTAATTTCTTCAAAGATTCATTAattttcattt                               >  2:638233/1‑141 (MQ=255)

                                                                                                                 aTTCTGTAATTA‑TTGTTTTTTTTTTTTTTTTGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCTTTTAATTTCTTCAATGATTTATTTatttttattttct                            >  2:677443/1‑140 (MQ=255)

                                                                                                                 aTTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCTTTTAATTTCTTCAAAGATTCATTAATTTTCATTTTcc                            >  1:252198/1‑141 (MQ=255)

                                                                                                                 aTTCTGGAATTA‑TTGTTTTTTCTTCTTGTTCGAAGTAAATTTCTAGTGTACCATCAGCTCAATTAAAAATAGCTTTCTTTTCATTTTCTTTGTATCCTTTTTCTTTTAATTTCTTCAAAGATTCCTTATTTTTCATTTTcc                            <  2:898571/141‑1 (MQ=255)

                                                                                                                  ttCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCTTTTAATTTCTTCAAAGATTCATTAATTTTCATTTTCCt                           <  1:609144/141‑1 (MQ=255)

                                                                                                                   tCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAGATAGCTTTATCTTCTTTTTCTTTGTATCCTTTTTCTTTTAATTTCTTCAAAGATTCATTAATTTTCATTTTCCTg                          <  1:479517/141‑1 (MQ=255)

                                                                                                                    ttGTAATTA‑TTGTTTTTTCGTCATTGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCTTTTAATTTCTTCAAAGATTCATTAATTTTCATTTTCCTGt                         <  2:367549/140‑1 (MQ=255)

                                                                                                                    ttGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCCTTGTATCCTTTTTCTTTTAATTTCTTCAAAGATTCATTAATTTTCATTTTCCTGt                         <  2:185155/140‑1 (MQ=255)

                                                                                                                    cTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTACATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCTTTTAATTTCTTCAAAGATTCATTAATTTTCATTTTCCTGt                         <  2:597133/141‑1 (MQ=255)

                                                                                                                    cTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTAATTTTCTTTGTATCCTTTTTCTTTTAATTTCTTCAAAGATTCATTAATTTTCATTTTCCTGt                         <  1:793615/141‑1 (MQ=255)

                                                                                                                         atta‑ctGTTGTCTCGTCATGGTCGATGTAAATTTCTAGCGTACCATAAAATAAATAAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCTTTTAATTTCTTCAAAGATTCATTAATTTTCATTTTCCTGTtcctc                    <  2:365996/141‑1 (MQ=255)

                                                                                                                           tttgtgctttttCGTTATGGTGGATGTAAATTTCGTGCGTACCCTAGGCTAAATTAAAGATAGGTTTGTCATCATTTTCTTTGTATCCTTTTTCTCTTAATTTCTTCAAAGATTCATTAAGTTTCACTTTCGTGTgcctct                   <  2:330934/134‑2 (MQ=255)

                                                                                                                           ta‑ttGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCTTTTAATTTCTTCAAAGATTCATTAATTTTCATTTTCCTGTTcctcct                  <  1:635126/141‑1 (MQ=255)

                                                                                                                               tGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCTTTTAATTTCTTCAAAGATTCATTAATTTTCATTTTCCTGTTCCTCCTCat               <  2:876404/141‑1 (MQ=255)

                                                                                                                                 ttttttCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCTTTTAATTTCTTCAAAGATTCATTAATTTTCATTTTCCTGTTCCTCCTCatat             <  1:1093875/141‑1 (MQ=255)

                                                                                                                                  tttttCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCGTCATTTTCTTTGTATCCTTTTTCTTTTAATTTCTTCAAAGATTCATTAATTTTCATTTTCCTGTTCCTCCTCATAtt            <  2:945380/141‑1 (MQ=255)

                                                                                                                                    tttCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCTTTTAATTTCTTCAAAGATTCATTAATTTTCATTTTCCTGTTCCTCCTCATATTCa          <  1:887134/141‑1 (MQ=255)

                                                                                                                                    tttCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCTTTTAATTTCTTCAAAGATTCATTAATTTTCATTTTCCTGTTCCTCCTCATATTCa          <  1:396640/141‑1 (MQ=255)

                                                                                                                                      tCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCTTTTAATTTCTTCAAAGATTCATTAATTTTCATTTTCCTGTTCCTCCTCATATTCAAg        <  2:746333/141‑1 (MQ=255)

                                                                                                                                       cGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCTTTTAATTTCTTCAAAGATTCATTAATTTTCATTTTCCTGTTCCTCCTCATATTCAAGc       >  1:487486/1‑141 (MQ=255)

                                                                                                                                        gTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCTTTTAATTTCTTCAAAGATTCATTAATTTTCATTTTCCTGTTCCTCCTCATATTCAAGct      <  1:426744/141‑1 (MQ=255)

                                                                                                                                        gTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCTTTTAATTTCTTCAAAGATTCATTAATTTTCATTTTCCTGTTCCTCCTCATATTCAAGct      <  2:482974/141‑1 (MQ=255)

                                                                                                                                         tCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCTTTTAATTTCTTCAAAGATTCATTAATTTTCATTTTCCTGTTCCTCCTCATATTCAAGctc     >  1:592790/1‑141 (MQ=255)

                                                                                                                                         tCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCTTTTAATTTCTTCAAAGATTCATTAATTTTCATTCTCCCGTCCGTCCTCACATTCAAGctc     >  2:1056183/1‑141 (MQ=255)

                                                                                                                                          cATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCTTTTAATTTCTTCAAAGATTCATTAATTTTCATTTTCCTGTTCCTCATCATATTCAAActct    >  1:670581/1‑141 (MQ=255)

AGGATGTTAGTCATTTTCCTTGTCCTCCTCATCAATTCCAGCCAATTCATACATAACGCTCTCCATACTTTTATCTTTTAAATCTTCTGACACGAATACCTTTAAATCATGGAATTCTGTAATTA‑TTGTTTTTTCGTCATGGTCGATGTAAATTTCTAGCGTACCATCAGCTAAATTAAAAATAGCTTTATCTTCATTTTCTTTGTATCCTTTTTCTTTTAATTTCTTCAAAGATTCATTAATTTTCATTTTCCTGTTCCTCCTCATATTCAAGCTCTCT  >  CP000730/2113164‑2113443

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`