New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1695023 =	72 (0.920)	3 (0.060) +ATTGGCATTTACGAAGTTTAAATGTGCAATTAGAATATATGTATAACAATATT	3/170	9.2	6.2%	coding (119/129 nt)	USA300HOU_1585	hypothetical protein
	?	CP000730	2830190 =	76 (0.970)					intergenic (+18/+173)	icaC/USA300HOU_2670	intercellular adhesion protein C/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TAATATTTATTCTTGTTTAGAGGGAGTGAGATAGAAATAATAAAGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGAC  >  CP000730/1694883‑1695157                                                                                                                                             |                                                                                                                                       tAATATTTATTCTTGTTTAGAGGGAGTGAGATAGAAATAATAAAGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAg                                                                                                                                        <  1:256077/141‑1 (MQ=255)  aaTATTTATTCTTGTTTAGAGGGAGTGAGATAGAAATAATAAAGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAgg                                                                                                                                       <  2:45154/141‑1 (MQ=255)          ttCTTGTTTAGAGGGAGTGAGATAGAAATAATAAAGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAACCTCATGCATAAGGGAGTGGGa                                                                                                                               <  2:360694/141‑1 (MQ=255)          ttCTTGTTTAGAGGGAGTGAGATAGAAATAATAAAGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGa                                                                                                                               <  2:360695/141‑1 (MQ=255)           tCTTGTTTAGAGGGAGTGAGATAGAAATAATAAAGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGAc                                                                                                                              <  2:819316/141‑1 (MQ=255)              tGTTTAGAGGGAGTGAGATAGAAATAATAAAGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGa                                                                                                                           <  1:685296/141‑1 (MQ=255)                 ttAGAGGGAGTGAGATAGAAATAATAAAGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAAt                                                                                                                        <  1:630823/141‑1 (MQ=255)                    tcgtgcacctgaTAGAAATAATAAAGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGat                                                                                                                     <  1:905454/131‑1 (MQ=255)                      gggAGTGAGATAGAAATAATAAAGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGatat                                                                                                                   >  2:252985/1‑141 (MQ=255)                      gggAGTGAGATAGAAATAATAAAGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGatat                                                                                                                   >  2:527721/1‑141 (MQ=255)                        gAGTGAGATAGAAATAATAAAGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATAttt                                                                                                                 >  1:49585/1‑141 (MQ=255)                            gagaTAGAAATAATAAAGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGc                                                                                                             >  1:593535/1‑141 (MQ=255)                              gaTAGAAATAATAAAGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCaa                                                                                                           <  2:410366/141‑1 (MQ=255)                                tAGAAATAATAAAGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCaaaa                                                                                                         >  2:260093/1‑141 (MQ=255)                                  gAAATAATAAAGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAatt                                                                                                       <  1:142219/141‑1 (MQ=255)                                  gAAATAATAAAGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACGCATGCATAAGGGGGTGGGACAGAAATGATATTTTCGCAAAatt                                                                                                       <  2:353417/141‑1 (MQ=255)                                       aataaAGAACCACTCATGATTTCTTATGTAGTGGCTCTTACACATCAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTACGCAAAatttattt                                                                                                  >  2:133308/1‑141 (MQ=255)                                       aataaAGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAatttattt                                                                                                  >  1:776352/1‑141 (MQ=255)                                            aGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTtcgtcg                                                                                             >  1:461346/1‑141 (MQ=255)                                            aGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTtcgtcg                                                                                             >  2:412006/1‑141 (MQ=255)                                              aaCCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCgtcgtc                                                                                           >  2:201441/1‑141 (MQ=255)                                               aCCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTcc                                                                                          >  2:833476/1‑141 (MQ=255)                                                ccACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGt                                                                                                                                   >  1:861852/1‑99 (MQ=255)                                                ccACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGt                                                                                                                                   <  2:861852/99‑1 (MQ=255)                                                 cACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCa                                                                                        >  2:652619/1‑141 (MQ=255)                                                  aCTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCAc                                                                                       >  2:656733/1‑141 (MQ=255)                                                  aCTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCAc                                                                                       >  2:263251/1‑141 (MQ=255)                                                     aaTGATTTATTATGTAGTGGCTCTTACACATTAGTTAAATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCNAcccc                                                                                    >  1:256670/1‑141 (MQ=255)                                                      aTGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCa                                                                                   <  1:445482/141‑1 (MQ=255)                                                          tttATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACtt                                                                               <  2:886259/141‑1 (MQ=255)                                                          tttATTATGGAGGGTCTGTTACACAGTATCCTTATCTAAGATTTGCTTATGAAGAAAATTACATGATTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACtt                                                                               <  1:83036/141‑1 (MQ=18)                                                            tattatGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGc                                                                             >  1:378434/1‑141 (MQ=255)                                                             attatGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCa                                                                            <  1:304554/141‑1 (MQ=255)                                                                       ggCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAg                                                                  >  2:700580/1‑141 (MQ=255)                                                                          tctTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAAt                                                               >  1:521248/1‑141 (MQ=255)                                                                             tACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTc                                                            >  2:861419/1‑141 (MQ=255)                                                                              acacATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCt                                                           >  1:207970/1‑141 (MQ=255)                                                                               cacaTTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCtt                                                          >  1:752947/1‑141 (MQ=255)                                                                               cacaTTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATGTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCtt                                                          >  1:638191/1‑141 (MQ=255)                                                                                   ttAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCg                                                      <  1:571324/141‑1 (MQ=255)                                                                                        cAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAAtt                                                 >  1:354182/1‑141 (MQ=255)                                                                                          gATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTTGAGAAGTTCTTTTCGAAATtct                                               <  2:461346/141‑1 (MQ=255)                                                                                          gATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATtct                                               <  2:636747/141‑1 (MQ=255)                                                                                           aTGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATtctc                                              <  2:117356/141‑1 (MQ=255)                                                                                            tGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCTTGCATTGCCTGTAGAATTTCTTTTCGAAATTctct                                             >  2:570127/1‑141 (MQ=255)                                                                                                atatGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGt                                         >  2:425558/1‑141 (MQ=255)                                                                                                  atGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTg                                       >  2:34230/1‑141 (MQ=255)                                                                                                  atGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGCGGGACAGAAATGATATCTTCGTAAACTTTCTACAGTTGTCCAACCTCAACTTGCATTGCCTGTACAATTTCTACTCGAAATTCTCCATGTTg                                       >  1:456134/1‑141 (MQ=25)                                                                                                    gTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTggg                                     <  2:755391/141‑1 (MQ=255)                                                                                                     tCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTgggg                                    >  2:409563/1‑141 (MQ=255)                                                                                                      ccTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCAc                                                                                       <  2:421597/89‑1 (MQ=255)                                                                                                      ccTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCAc                                                                                       >  1:421597/1‑89 (MQ=255)                                                                                                        ttAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCGCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGccc                                 <  1:540164/141‑1 (MQ=255)                                                                                                        ttAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGccc                                 <  1:652619/141‑1 (MQ=255)                                                                                                          aaaaaTAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGcccca                               <  1:524966/141‑1 (MQ=255)                                                                                                          aaaaaTAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGcccca                               <  1:26508/141‑1 (MQ=255)                                                                                                           aaaataaaatTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGccccac                              <  2:768826/141‑1 (MQ=255)                                                                                                             aataaaatTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTggggtggggccc                            <  2:848354/141‑9 (MQ=255)                                                                                                                 aaatTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAAc                        <  2:359467/141‑1 (MQ=255)                                                                                                                  aatTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACt                       <  1:93543/141‑1 (MQ=255)                                                                                                                  aatTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACt                       <  1:252985/141‑1 (MQ=255)                                                                                                                  aatTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACt                       <  1:700580/141‑1 (MQ=255)                                                                                                                   atTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAACCTCTCTATGTTGGGGCCCCACCCCAACtt                      >  2:202508/1‑141 (MQ=255)                                                                                                                   atTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACtt                      <  1:699682/141‑1 (MQ=255)                                                                                                                   atTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTCTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACtt                      >  2:811282/1‑141 (MQ=255)                                                                                                                     tACATTACTAAAACTCATGCATAATGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGc                    <  2:634704/141‑1 (MQ=255)                                                                                                                              tttaCTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAg           >  1:3630/4‑141 (MQ=255)                                                                                                                                aaCTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTa         >  1:787331/1‑141 (MQ=255)                                                                                                                                 aCTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCCCCCCAACTTGCACATTATAGTaa        >  2:750114/1‑141 (MQ=255)                                                                                                                                    cATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCt     >  2:327191/1‑141 (MQ=255)                                                                                                                                      tGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGa   >  1:577466/1‑141 (MQ=255)                                                                                                                                       gCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTGTTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATCGTAGGCttcc  >  2:33283/1‑138 (MQ=255)                                                                                                                                             |                                                                                                                                       TAATATTTATTCTTGTTTAGAGGGAGTGAGATAGAAATAATAAAGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGAC  >  CP000730/1694883‑1695157

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.