New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2624055	5 (0.150)	6 (0.180)	4/268	4.7	67.2%	intergenic (‑1385/+2651)	USA300HOU_2485/sarT	MFS family major facilitator transporter, cation symporter/staphylococcal accessory regulator T
	?	CP000730	= 2624449	1 (0.030)					intergenic (‑1779/+2257)	USA300HOU_2485/sarT	MFS family major facilitator transporter, cation symporter/staphylococcal accessory regulator T
Rejected: Coverage evenness skew score above cutoff.

ATTAAATTTACGTTCTTTCTCGAATGGAATTTCTTCTTTTTCTACAATCGAGTCTCCTTTTACAGGTCCATATTTTGTTACGCTATCGACCGGTGGTCTAACTACATCTCCTGTTTCTGGATTCTTAATTCCTGGTTTACCTGGAACTTCCTCTTTCT  >  CP000730/2623924‑2624081                                                                                                                                    |                           aTTAAATTTACGTTCTTTCTCGAATGGAATTTCTTCTTTTTCTACAATCGAGTCTCCTTTTACAGGTCCATATTTTGTTACGCTATCGACCGGTGGTCTAACTACATCTCCTGTTTATGGATTCTTAATTCCTGGTTTAcc                   >  1:73766/1‑141 (MQ=17)    aaaTTTACGTTCTTTCTCGAATGGAATTTCTTCTTTTTCTACAATCGAGTCTCCTTTTACAGGTCCATATTTTGTTACGCTATCGACCGGTGGTCTAACTACATCTCCTGTTTCTGGATTCTTAATTCCTGGTTTACCTgg                <  2:283124/141‑1 (MQ=32)       tttACGTTCTTTCTCGAATGGAATTTCTTCTTTTTCTACAATCGAGTCTCCTTTTACAGGTCCATATTTTGTTACGCTATCGACCGGTGGTCTAACTACATCTCCTGTTTCTGGATTCTTAATTCCAGGtaaaccaggaat             <  2:223395/141‑12 (MQ=11)                tttctCGAATGGAATTTCTTCTTTTTCTACAATCGAGTCTCCTTTTACAGGTCCATATTTTGTTACGCTATCGACCGGTGGTCTAACTACATCTCCTGTTTCTGGATTCTTAATTCCTGGTTTACCTGGAACTTCCTCttt    >  1:179865/1‑141 (MQ=32)                 ttttcGAGTGGAATTTCTTCTTTTTCTACAATCTAGTCTCCTTTTACAGGTCCATATTTTGTTACGCTATCGACCGGTTGTCTAACTACATCTCCTGTTTCTGGATTCTTAATTCCTGGTTTACCTGGAACTTCCTCATtc   <  2:30888/138‑1 (MQ=11)                  cgtcGAATGGAATTTCTTCTTTTTCTACAATCGAGTCTCCTTTTACAGGTCCATATTTTGTTACGCTATCGACCGGTGGTCTAACTACATCTCCTGTTTCTGGATTCTTAATTCCTGGTTTACCTGGAACTTCCTCTTtct  <  1:373508/139‑1 (MQ=14)                                                                                                                                    |                           ATTAAATTTACGTTCTTTCTCGAATGGAATTTCTTCTTTTTCTACAATCGAGTCTCCTTTTACAGGTCCATATTTTGTTACGCTATCGACCGGTGGTCTAACTACATCTCCTGTTTCTGGATTCTTAATTCCTGGTTTACCTGGAACTTCCTCTTTCT  >  CP000730/2623924‑2624081

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.