New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 26240555 (0.150)6 (0.180) 4/268 4.7 60.4% intergenic (‑1385/+2651) USA300HOU_2485/sarT MFS family major facilitator transporter, cation symporter/staphylococcal accessory regulator T
?CP000730 = 2624065 3 (0.090)intergenic (‑1395/+2641) USA300HOU_2485/sarT MFS family major facilitator transporter, cation symporter/staphylococcal accessory regulator T
Rejected: Coverage evenness skew score above cutoff.

AAATTTACGTTCTTTCTCGAATGGAATTTCTTCTTTTTCTACAATCGAGTCTCCTTTTACAGGTCCATATTTTGTTACGCTATCGACCGGTGGTCTAACTACATCTCCTGTTTCTGGATTCTTAATTCCTGGTTTACCTGGAACTTCCTCTTTCT  >  CP000730/2623927‑2624081
                                                                                                                                          |                
aaaTTTACGTTCTTTCTCGAATGGAATTTCTTCTTTTTCTACAATCGAGTCTCCTTTTACAGGTCCATATTTTGTTACGCTATCGACCGGTGGTCTAACTACATCTCCTGTTTCTGGATTCTTAATTCCTGGTTTACCTgg                <  2:283124/141‑1 (MQ=32)
            tttctCGAATGGAATTTCTTCTTTTTCTACAATCGAGTCTCCTTTTACAGGTCCATATTTTGTTACGCTATCGACCGGTGGTCTAACTACATCTCCTGTTTCTGGATTCTTAATTCCTGGTTTACCTGGAACTTCCTCttt    >  1:179865/1‑141 (MQ=32)
             ttttcGAGTGGAATTTCTTCTTTTTCTACAATCTAGTCTCCTTTTACAGGTCCATATTTTGTTACGCTATCGACCGGTTGTCTAACTACATCTCCTGTTTCTGGATTCTTAATTCCTGGTTTACCTGGAACTTCCTCATtc   <  2:30888/138‑1 (MQ=11)
              cgtcGAATGGAATTTCTTCTTTTTCTACAATCGAGTCTCCTTTTACAGGTCCATATTTTGTTACGCTATCGACCGGTGGTCTAACTACATCTCCTGTTTCTGGATTCTTAATTCCTGGTTTACCTGGAACTTCCTCTTtct  <  1:373508/139‑1 (MQ=14)
                                                                                                                                          |                
AAATTTACGTTCTTTCTCGAATGGAATTTCTTCTTTTTCTACAATCGAGTCTCCTTTTACAGGTCCATATTTTGTTACGCTATCGACCGGTGGTCTAACTACATCTCCTGTTTCTGGATTCTTAATTCCTGGTTTACCTGGAACTTCCTCTTTCT  >  CP000730/2623927‑2624081

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.