New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 26244393 (0.090)6 (0.180) 4/268 4.7 75.4% intergenic (‑1769/+2267) USA300HOU_2485/sarT MFS family major facilitator transporter, cation symporter/staphylococcal accessory regulator T
?CP000730 = 2624449 1 (0.030)intergenic (‑1779/+2257) USA300HOU_2485/sarT MFS family major facilitator transporter, cation symporter/staphylococcal accessory regulator T
Rejected: Coverage evenness skew score above cutoff.

TTAAATTTACGTTCTTTCTTGAATGGAATTTCTTCTTTTTCTACAATCGAGTCTCCTTTTACAGGTCCATATTTTGTTACGCTATCGACCGGTGGTCTAACTACATCTCCTGTTTCTGGATTCTTAATTCCTGGTTTACCTGGAACTTCCTCTTTCTCTC  >  CP000730/2624309‑2624468
                                                                                                                                            |                   
ttAAATTTACGTTCTTTCTTGAATGGAATTTCTTCTTTTTCTACAATCGAGTCTCCTTTTACAGGTCCATATTTTGTTACGCTATCGACCGGTGGTCTAACTACATCTCCTGTTTCTGGATTCTTAATTCCTGGTTTACCt                     >  1:363778/1‑141 (MQ=32)
   aaTTTACGTTCTTTCTTGAATGGAATTTCTTCTTTTTCTACAATCGAGTCTCCTTTTACAGGTCCATATTTTGTTACGCTATCGACCGGTGGTCTAACTACATCTCCTGTTTCTGGATTCTTAATTCCTGGTTTACCTGGa                  <  1:314936/141‑1 (MQ=32)
                   tGAATGGAATTTCTTCTTTTTCTACAATCGAGTCTCCTTTTACAGGTCCATATTTTGTTACGCTATCGACCGGTGGTCTAACTACATCTCCTGTTTCTGGATTCTTAATTCCTGGTTTACCTGGAACTTCCTCTTtctctc  >  1:57486/1‑141 (MQ=11)
                                                                                                                                            |                   
TTAAATTTACGTTCTTTCTTGAATGGAATTTCTTCTTTTTCTACAATCGAGTCTCCTTTTACAGGTCCATATTTTGTTACGCTATCGACCGGTGGTCTAACTACATCTCCTGTTTCTGGATTCTTAATTCCTGGTTTACCTGGAACTTCCTCTTTCTCTC  >  CP000730/2624309‑2624468

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.