| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 36,315 | 0 | G | A | 60.1% | 233.2 / inf | 512 | Y79Y (TAC→TAT) | tpn | IS431mec transposase |
| Reads supporting (aligned to +/- strand): ref base G (104/98); new base A (167/137); total (275/237) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.67e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 513 total aligned reads displayed.
TTACCAAATTGTTTAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGA‑ACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTT > CP000730/36175‑36454 | aCCAAATTGTTTAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATGTa < 2:151988/141‑1 (MQ=32) aaaTTGTTTAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATATACGt < 2:289560/141‑1 (MQ=12) aTTGTTTAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATATACGtct < 1:205112/141‑1 (MQ=12) ttGTTTAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATATACGtctc > 2:312809/1‑141 (MQ=17) tGTTTAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCATATATCTAATGTAGGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTTATATACGTCtca > 1:293987/1‑141 (MQ=11) ttAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATATACGTCtcatca > 1:85848/1‑141 (MQ=12) tAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATATACGt < 2:280182/133‑1 (MQ=16) aaTGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAACTATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATATACGTCTCATCAAt < 1:333226/141‑1 (MQ=12) aaTGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATGTACGTCTCATCAAt < 2:46004/141‑1 (MQ=32) aTGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATATACGTCTCATCAATa > 1:248063/1‑141 (MQ=12) aTGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTCCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATGTACGTCTCATCAATa > 1:36760/1‑141 (MQ=17) tGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATGTACGTCTCATCAATAc < 2:367845/141‑1 (MQ=32) gTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATATACGTCTCATCAATACGCCAtt > 1:341400/1‑141 (MQ=12) tttGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATATACGTCTCATCAATACGCCAttt > 1:108302/1‑141 (MQ=17) tGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATGTACGTCTCATCAATACGCCATTTGt < 1:63476/141‑1 (MQ=32) gATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATATACGTCTCATCAATACGCCATTTGta > 2:300864/1‑141 (MQ=12) aTAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTC‑TTTTGTTCTCCGTCTCATCAATACGCCATTTGtaa < 1:287853/141‑1 (MQ=11) aTAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATATACGTCTCATCAATACGCCATTTGtaa < 1:4613/141‑1 (MQ=12) aCGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATACATCGCTCTATTTTGCTTTTA‑TTTTGATATACGTCTCATCAATACGCCATTTGTAATAAg > 1:353219/1‑141 (MQ=11) aCGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTTGATATACGTCTCATCAATACGCCATTTGtaataa > 2:235698/1‑141 (MQ=255) aCGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATATACGTCTCATCAATACGCCATTTGtaataat > 1:222781/1‑140 (MQ=16) aCGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATATACGTCTCATCAATACGCCATTTGTAATAAg > 2:205551/1‑141 (MQ=255) aCGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATATACGTCTCATCAATACGCCATTTGTAATAAg > 2:82613/1‑141 (MQ=255) cGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGc < 1:167709/141‑1 (MQ=25) gCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTa > 1:94228/1‑141 (MQ=255) gattGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATGTACGTCTCATCAATACGCCATTTTTAATAAGCTTTTTTATGc < 2:338349/138‑1 (MQ=255) aTGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCtt < 2:129378/141‑1 (MQ=255) ttATCTCGTTGCTTACGCAACAAAACATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTttc < 1:393930/141‑1 (MQ=255) tATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGTCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATATACGTCTCATCAATACGCCATGTGTAATAAGCTTTTTTATGCGTTttct > 2:65699/1‑141 (MQ=14) tATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTttct > 1:267419/1‑141 (MQ=255) tATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTttct < 1:80510/141‑1 (MQ=40) tATCTCGTAGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATATACGTCTCATCAATACGCCCTTTGTAATAAGCTTTTTTATGCTTTttct > 2:52719/1‑141 (MQ=255) aTCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTGTGCATCAATGTCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTTATTTACGTCGCATAAATACGCCATTTGTAATAAGCTTTTTTATGCTTTttctt > 2:32662/1‑141 (MQ=14) tctcGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTttcttc < 1:217179/141‑1 (MQ=255) gTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCaaa > 2:112222/1‑141 (MQ=255) tgcgtaagCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAAtt > 1:32081/8‑141 (MQ=255) tGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAAtt > 1:229874/1‑141 (MQ=255) ttACGCAACAAAATAACTAATGTATGTCCCTCTGTATCAATGGCACGATATGAATAGCTCCAGTTTCCTTTTA‑TTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTGCATCCAAATTTGa > 2:137992/1‑141 (MQ=14) aCGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATGTACGTCTCGTCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATa < 2:38822/141‑1 (MQ=255) aCGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATa < 2:216131/141‑1 (MQ=40) cGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATat < 1:328323/141‑2 (MQ=255) cGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATat < 1:266927/141‑2 (MQ=255) cAACCAAATATCTAATGTTTGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATATACGACACATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTATTCCAAATTTGacataa > 1:122239/1‑136 (MQ=11) tCTAATGTATGTCCCTCTGCATCAATGGCACTATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCa > 1:145653/1‑141 (MQ=255) tCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCa > 2:108550/1‑141 (MQ=255) cTAATGTATGTCTCTATATGTCAATGGCAGGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGTTATAAAATTGGGGCat < 2:168279/141‑1 (MQ=11) cTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCat > 2:383333/1‑141 (MQ=255) tAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCata > 2:100811/1‑141 (MQ=255) aaTGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCatat < 2:372985/141‑1 (MQ=38) tgtCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGa > 2:25159/1‑141 (MQ=255) tgtCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGa < 1:274878/141‑1 (MQ=25) gtCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTTTTCTCTTTCTTTCAATTTTTATATAAAAATGGGGCATATTCTTTa‑a > 2:182837/1‑141 (MQ=11) gtCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGa‑a < 1:211745/141‑1 (MQ=255) gtCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGa‑a < 1:1833/141‑1 (MQ=25) gtCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGa‑a < 1:198744/141‑1 (MQ=25) tCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGA‑Ac < 2:57975/141‑1 (MQ=21) tCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGA‑Ac > 2:343648/1‑141 (MQ=25) cccTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCCAATTTGATATAAAATTCGGGCCTATTCTTGA‑Acc > 1:390462/1‑141 (MQ=11) cccTCTGTATCAATGGCACGATATAAATAGCTCATTTTTTTTTTTT‑TTTTTATATACGAATCATCAATACGCCATTTTTAATAATCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCACATTCTTTA‑Acc > 2:273154/1‑141 (MQ=11) tctGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGA‑ACCCaa < 2:263086/141‑1 (MQ=255) ctGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGA‑ACCCAAc > 1:57445/1‑141 (MQ=40) gCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGA‑ACCCAACgg < 1:70697/141‑1 (MQ=21) gCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGA‑ACCCAACgg > 1:175567/1‑141 (MQ=21) cATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGA‑ACCCAACGGt > 1:263085/1‑141 (MQ=21) aTCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGA‑ACCCAACGGTa < 2:49463/141‑1 (MQ=16) tCACTGGCACAATATAACTAGCTCCATTTTCCTTTTA‑TTTCGATACACGTCTCATCAATACGCTATTTGTAATAAGCCTTTTGATGCTTTTTCTTCCAAATTTGCTATAAAATTGGGGCTTATTCTTGA‑GCCCAACGGTAg < 2:320561/141‑1 (MQ=11) cAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGA‑ACCCAACGGTAGa > 1:235691/1‑141 (MQ=40) tGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGA‑ACCCAACGGTAGACCg < 1:284434/141‑1 (MQ=18) cACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGA‑ACCCAACGGTAGACCGTTg < 1:118406/141‑1 (MQ=21) aCGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTAGGGAATATTCTTGACACCCatcatagatagttct > 2:232641/1‑127 (MQ=11) cGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGA‑ACCCAACGGTAGACCGTTGaa > 2:71802/1‑141 (MQ=21) cGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATGCTTGA‑ACCCAACGGTAGGCCGTTGaa > 1:280920/1‑141 (MQ=255) cGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGA‑ACCCAACGGTCTACCGTTggg < 1:192081/141‑3 (MQ=255) cGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATTTAAAATTCGGGCATAGTCTGGA‑ACTTGACGGTatatctgtcaa > 2:175115/1‑131 (MQ=11) cGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGA‑ACCCAACGGTAGATCGTTGaa > 1:347123/1‑141 (MQ=255) taAATAGCTCCATTTTCCTTTTA‑TTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGA‑ACCCAACGGTAGACCGTTGAatgatg > 1:5002/1‑141 (MQ=40) aaaTAGCTCCATTTTCCTTTTA‑TTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGA‑ACCCAACGGTAGACCGTTGAAtgatga < 1:299375/141‑1 (MQ=21) aGCTCCATTTTCCTTTTA‑TTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCttt < 2:357578/71‑1 (MQ=255) aGCTCCATTTTCCTTTTA‑TTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGA‑ACCCAACGGTAGACCGTTGAATGATGAACGt > 1:54183/1‑141 (MQ=21) cTCCATTTTCCTTTTA‑TTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGTGGCATATTCTTGA‑CCCCAACGGTAGACCGTTGAATGATGAACGttt > 2:283356/1‑141 (MQ=255) tCCATTTTCCTTTTA‑TTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTCA‑ACCCAACGGTAGACCGTTGAATGATGAACGTTTa > 2:160562/1‑141 (MQ=255) cATTTTCCTTTTA‑TTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGA‑ACCCAACGGTAGATCGTTGAATGATGAACGTTTaca < 1:162168/141‑1 (MQ=255) aTTTTCCTTTTA‑TTTTGTTATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGA‑ACCCAACGGTAGATCGTTGAATGATGAACGTTTacac < 2:293987/141‑1 (MQ=255) ttttCCTTTTA‑TTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGA‑ACCCAACGGTAGACCGTTGAATGATGAACGTTTAcacc > 2:257767/1‑141 (MQ=21) ttttCCTTTTA‑TTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGA‑ACCCAACGGTAGATCGTTGAATGATGAACGTTTAcacc < 1:157774/141‑1 (MQ=255) tttCCTTTTA‑TTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGA‑ACCCAACGGTAGATCGTTGAATGATGAACGTTTAcacca < 1:371699/141‑1 (MQ=255) tCCTTTTA‑TTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGA‑ACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACg < 2:147236/141‑1 (MQ=255) ttttA‑TTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAAtt > 1:3865/1‑70 (MQ=255) ttttA‑TTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATGAAATTGGGGCATATTCTTGA‑ACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTc > 2:377261/1‑141 (MQ=11) ttttA‑TTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGA‑ACCCAACTGTAGATCGTTGAATGATGAACGTTTACACCACGTTc > 2:86053/1‑141 (MQ=255) tttA‑TTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGA‑ACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTcc > 2:391711/1‑141 (MQ=21) ttA‑TTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGA‑ACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTccc < 2:331837/141‑1 (MQ=21) ttA‑TTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGA‑ACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTctc < 1:7406/141‑3 (MQ=255) tA‑TTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGA‑ACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTctct > 1:185529/1‑141 (MQ=11) a‑TTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGA‑ACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCtt < 2:93279/141‑1 (MQ=255) gATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGA‑ACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAatat > 2:223775/1‑141 (MQ=25) gATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGA‑ACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAatat > 1:132603/1‑141 (MQ=21) gATGTACGTCTCATCAATACGCCATTTGTAATAAGCTGTTTTTTGCTGTTTCTTTAAGATTTGATATAAAATTGGGTCATATTCTTGA‑ACCCAACGTTAGTCCGTTGAATGATGAACTTTTACACCACGTTCCCTTAatat > 2:194887/1‑141 (MQ=11) gATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGA‑ACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAatat > 2:241088/1‑141 (MQ=255) tGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGA‑ACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATAttt > 1:256674/1‑141 (MQ=40) | TTACCAAATTGTTTAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTA‑TTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGA‑ACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTT > CP000730/36175‑36454 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |