New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 37094 =98 (1.250)9 (0.120) 4/240 NT 10.1% coding (21/231 nt) USA300HOU_0028 hypothetical protein
?CP000730 37188 = 69 (0.960)coding (115/231 nt) USA300HOU_0028 hypothetical protein

TCCTCTTATTAGTATAATCTCAGTAAGAATGCGTATAAAAATGAAAATTACAACCGATTTTGTAAGTGCTGACGCCTGAGGGAATAGTATGTGCGAGAGACTAATGGCTCGAGCCATACCCCTAGGCAAGCATGCACGTACAAAATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/37241‑37094
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacaaaatcgGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTCAGTAAAATTACAGATAAGAGGTACGTTA  >  CP000730/37188‑37327
                                                                                                                                                                                                                                                                                                
TCCTCTTATTAGTATAATCTCAGTAAGAATGCGTATAAAAATGAAAATTACAACCGATTTTGTAAGTGCTGACGCCTGAGGGAATAGTATGTGCGAGAGACTAATGGCTCGAGCCATACCCCTAGGCAAGCATGCACGTAC                                                                                                                                                     >  1:835080/1‑141
TCCTCTTATTAGTATAATCTCAGTAAGAATGCGTATAAAAATGAAAATTACAACCGATTTTGTAAGTGCTGACGCCTGAGGGAATAGTATGTGCGAGAGACTAATGGCTCGAGCCATACCCCTAGGCAAGCATGCACGTAC                                                                                                                                                     >  1:53036/1‑141
TCCTCTTATTAGTATAATCTCAGTAAGAATGCGTATAAAAATGAAAATTACAACCGATTTTGTAAGTGCTGACGCCTGAGGAAATAGTATGTGCGGGAGCCTAATGGATCGAGCCATACCCCAAGCCAAGCATGCAGGTAa                                                                                                                                                     >  2:131766/1‑140
 CCTCTTATTAGTATAATCTCAGTAAGAATGCGTATAAAAATGAAAATTACAACCGATTTTGTAAGTGCTGACGCCGGAGGGAATAGTATGTGCGAGAGACTAATGGCTCGAGCCATACCCCTAGGCAAGCATGCACGTACA                                                                                                                                                    <  2:325660/141‑1
 CCTCTTATTAGTATAATCTCAATAATATTTCTTATAAAAATGAAAATTACAACCGATTTTGTAAGTGCTGACGCCTGAGGGAATAGTATGTGCGAGAGACTAATGGCTCGAGCCATACCCCTAGGCAAGCATGCACGTACA                                                                                                                                                    <  2:899709/141‑1
 CCTCTTATTAGTATAATCGCAGTAAGAATGCGTATAAAAATGAAAATTACAACCGATTTTGTAAGTGCTGACGCCTGAGGGAATAGTATGTGCGAGAGACTAATGGCTCGAGCCATACCCCTAGGCAAGCATGCACGTACA                                                                                                                                                    <  1:566400/141‑1
   TCTTATTATTATAATCTCAGTAAGAATGCGTATAAAAATGAAAATTACAACCGATTTTGTAAGTGCTGACGCCTGAGGGAATAGTATGTGCGAGAGACTAATGGCTCGAGCCATACCCCTAGGCAAGCATGCACGTACAAA                                                                                                                                                  <  2:847603/141‑1
      TATTAGTATAATCTCAGTAAGAATGCGTATAAAAATGAAAATTACAACCGATTTTGTAAGTGCTGACGCCTGAGGGAATAGTATGTGCGAGAGACTAATGGCTCGAGCCATACCCCTAGGCAAGCATGCACGTACAAAATC                                                                                                                                               >  1:804110/1‑141
      TATTAGTATAATCTCAGTAAGAATGCGTATAAAAATGAAAATTACAACCGATTCTGTAAGTGCTGACGCCTGAGGGAATAGTCTGTGCGAGAGCCTAATGGCTCGAGCCATACCCCTAGGCAAGCATGCCCGAGCAAAATg                                                                                                                                               >  2:575593/1‑140
      TATTAGTATAATCTCAGTAAGAATGCGTATAAAAATGAAAATTACAACCAATTTTGTAAGTGCTGACGCCTGAGGGAATAGTATGTCCGAGAGACTAATGGCTCGCGCCATACCCCTAGGCAAGNATGCCCGTACAAAATC                                                                                                                                               >  1:907691/1‑141
       ATTAGTATAATCTCAGTAAGAATGCGTATAAAAATGAAAATTACAACCGATTTTGTAAGTGCTGACGCCTGAGGGAATAGTATGTGCGAGAGACTAATGGCTCGAGCCATACCCCTAGGCAAGCATGCACGTACAAAATCG                                                                                                                                              >  2:386697/1‑141
                                                                    CTGACGCCTGAGGGAATAGTATGTGCGAGAGACTAATGGCTCGAGCCATACCCCTAGGCAAGCATGCACGTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAA                                                                                 >  2:52214/1‑141
                                                                    CTGACGCCTGAGGGAATAGTATGTGCGAGAGACTAATGGCTCGAGCCATACCCCTAGGCAAGCATGCACGTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAA                                                                                 >  1:433032/1‑141
                                                                    CTGACGCCTGAGGGAATAGTATGTGCGAGAGACTAATGGCTCGAGCCATACCCCTAGGCAAGCATGCACGTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAA                                                                                 >  2:52176/1‑141
                                                                      GACGCCTGAGGGAATAGTATGTGCGAGAGACTAATGGCTCGAGCCATACCCCTAGGCAAGCATGCACGTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAA                                                                               >  1:386018/1‑141
                                                                            TGAGGGAATAGTATGTGCGAGAGACTAATGGCTCGAGCCATACCCCTAGGCAAGCATGCACGTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATCGTAAAAGCAATT                                                                         >  2:263727/1‑141
                                                                            TGAGGGAATAGTATGTGCGAGAGACTAATGGCTCGAGCCATACCCCTAGGCAAGCATGCACGTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATT                                                                         >  2:243935/1‑141
                                                                                                             CGAGCCATACCCCTAGGCAAGCATGCACGTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAGTTGCAGATAAGAGGTTTGTTAAA                                        <  2:433032/141‑1
                                                                                                             CGAGCCATACCCCTAGGCAAGCATGCACGTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAA                                        <  1:52214/141‑1
                                                                                                             CGAGCCATACCCCTAGGCAAGCATGCACGTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAA                                        <  1:52176/141‑1
                                                                                                                                           ACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGGTAAGAGGTTTGTTAAAAGCAGTTCTCAGTAAAATTACAGATAAGAG          >  1:829039/1‑141
                                                                                                                                           ACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTCAGTAAAATTACAGATAAGAG          >  1:677035/1‑141
                                                                                                                                           ACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTCAGTAAAATTACAGATAAGAG          <  1:771299/141‑1
                                                                                                                                               AATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTCAGTAAAATTACAGATAAGAGGTAg      >  1:625561/1‑140
                                                                                                                                                  CGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTCAGTAAAATTACAGATAAGAGGTACGTT   <  2:386018/141‑1
                                                                                                                                                   GGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTCAGTAAAATTACAGATAAGAGGTACGTTA  <  2:43876/141‑1
                                                                                                                                                   GGTTATTATTTACATTTTTATACTCATTCTAACTGAGAGTATACTAATAAGAGTAATAGTAAAAGCAATTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTCAGTAAAATGACAGATAAGAGGTACGTTA  <  2:414219/141‑1
                                                                                                                                                   GGTCGTAATTTTCATTTTTATACGCATTCTTATTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTCAGTAAAATTACAGATAAGAGGTACGTTA  <  2:634032/141‑1
                                                                                                                                                                                                                                                                                                
TCCTCTTATTAGTATAATCTCAGTAAGAATGCGTATAAAAATGAAAATTACAACCGATTTTGTAAGTGCTGACGCCTGAGGGAATAGTATGTGCGAGAGACTAATGGCTCGAGCCATACCCCTAGGCAAGCATGCACGTACAAAATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/37241‑37094
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacaaaatcgGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTCAGTAAAATTACAGATAAGAGGTACGTTA  >  CP000730/37188‑37327

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.