| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP000730 | 111,330 | C→A | 6.5% | Q134K (CAA→AAA) | USA300HOU_0110 → | possible staphylococcal tandem lipoprotein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 111,330 | 0 | C | A | 6.5% | 481.9 / 5.4 | 162 | Q134K (CAA→AAA) | USA300HOU_0110 | possible staphylococcal tandem lipoprotein |
| Reads supporting (aligned to +/- strand): ref base C (77/71); new base A (2/12); total (79/83) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.79e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 168 total aligned reads displayed.
AAATGGCAATTCAAAATAAAGGAGAAGCTCTAAAAATAAAAGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAA > CP000730/111190‑111470 | aaaTGGCAATTCAAAACAAAGGAGAAGCTCTAAAAATAAAAGGCATGCTTTTGAAGATAAATAGAAATACAAGAAGTGCAAAAGGATTTTACTAGACAAATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATc > 1:467244/1‑141 (MQ=255) aaTGGCAATTCAAAATAAAGGAGAAGCTCTAAAAATAAAAGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑a > 2:368219/1‑141 (MQ=255) aTGGCAATTCAAAATTAAGGAGAAGCTTTCAAAATAAAAGGCATGCAATTGAAGTTAGATAGAAATAAAAGAAGTGCAAAAGGATCTTACTTTACTAATGAAATAAAG‑ACGGAGAAATACGAAGTAGATCAGAATAATC‑aa > 2:424399/1‑141 (MQ=255) ggCAATTCAAAATAAAGGAGAAGCTCTAAAAATAAAAGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATaaaa‑aaaa < 2:284257/141‑1 (MQ=255) cAATTCAAAATAAAGGAGAAGCTCTAAAAATAAAAGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑aaaaaa > 1:521534/1‑141 (MQ=255) aaTAAAGGAGAAGCTCTAAAAATAAAAGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAGTATCCa > 1:309213/1‑141 (MQ=255) aaTAAAGGAGAAGCTCTAAAAATAAAAGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCa > 2:506883/1‑141 (MQ=255) aTAAAGGAGAAGCTCTAAAAATAAAAGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAg < 1:385779/141‑1 (MQ=255) aaaGGAGAAGCTCTAAAAATAAAAGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGCAATAAAT‑ACGGACAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGtt < 1:366228/141‑1 (MQ=255) aaaGGAGAAGCTATAAAAAAAAAAGGCATGCTTTTGAAGAAAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGAAAAATC‑AAAAAAAATATCCAGtt < 2:761644/141‑1 (MQ=255) aGGAGAAGCTCAAAAAAAAAAAGGAATTCGTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAAAGAAATAAAG‑ACGGAGAAATTCGATGTAGTTGAAAAAAAAA‑AAAAAAAATATCCAGTTaa < 2:855818/141‑1 (MQ=255) agaAGCTCTAAAAATAAAAGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAAt > 2:928451/1‑141 (MQ=255) agaAGCTCTAAAAATAAAAGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAAt > 2:554136/1‑141 (MQ=255) agaAGCTCTAAAAATAAAAGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAAt > 2:176736/1‑141 (MQ=255) gCTCTAAAAATAAAAGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGAtt < 1:657874/141‑1 (MQ=255) ctctAAAAATAAAAGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATta > 2:300397/1‑141 (MQ=255) tAAAAATAAAAGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATtaata > 1:53097/1‑141 (MQ=255) tAAAAATAAAAGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAAAATCCAATACAAATTATtaata > 2:888703/1‑141 (MQ=255) aaaTAAAGGGCAGGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATtaataata < 1:25990/141‑1 (MQ=255) aaaTAAAAGGCATGCTTTGGAAGATAGATAGAAATAAAAGAAGTGCAAAAGGATTCTACTATACTAATGAAATAAAG‑AAGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATtaataata < 2:574289/141‑1 (MQ=255) aaTAAAAGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATtaataataa < 1:592315/141‑1 (MQ=255) aaTAAAACGCAATATTTATAATATAGATATAAAAACAAGAAGTGCAAAAGCATTTTACCATACTAATAAAATAAAG‑ACGGAGAGATGCGAAGTAGCTAAAAAAAAAA‑AAAAAAAATATCCAGTTAAAATGATtaataataa < 2:448844/141‑1 (MQ=255) tAAAAGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAAt > 2:874780/1‑141 (MQ=255) aagattttGAAGATAGAGAGAAAGACAAGAAGTGCAAAAGGATTTTACTAAACTAATGAAATAAAG‑ACGGAGAAACACGTAGTAGCTAAAAAAAAAA‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCt < 2:342920/137‑1 (MQ=255) aTGCTTTGTAAGATAGATACAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCt < 2:194378/141‑1 (MQ=255) ttttGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTg > 1:631192/1‑141 (MQ=255) gAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAAGC‑AAAAAAAATATCCAGGTAAAATGATTAATAATAAATTCATTTCTACTGAGGa < 2:82514/141‑1 (MQ=255) aaGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGGAAGAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGaa > 1:735397/1‑141 (MQ=255) aaGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGaa > 1:138263/1‑141 (MQ=255) aaagaaaaaaaaACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACAGAGGAAGtt < 2:606835/133‑1 (MQ=255) tagatagaAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTa > 1:454258/1‑141 (MQ=255) tagatagaAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAA‑ACGGAGAAATAAGAAGTAGCTCAGGATAATC‑AAAAAAAATCTCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGCGGCAGTTa > 1:25568/1‑141 (MQ=255) tagatagaAATACAAGAAGTGCAAAAGGATGTTACTAGA‑AAAAAAGCTGATGAATTGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTa < 1:922947/141‑1 (MQ=255) agatagaAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTaa < 1:708037/141‑1 (MQ=255) agatacaACAACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTaa < 1:169366/141‑1 (MQ=255) acaaaaaaTAAAAGAAGGACAAAAGGATTTTAATATAATAAAGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTaaa < 2:25568/136‑1 (MQ=255) atagaAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAaag < 1:92015/141‑1 (MQ=255) aagaAAAACAAGAAGTGAAAAAGGATGTTACTATACAAAAAAAATAAAG‑ACGGAGAAATACGAAGTAGCTAAAAAAAAAA‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAaaga < 2:396771/140‑1 (MQ=255) agaAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAaagaa > 2:896797/1‑141 (MQ=255) aaaaTACAAGAAGTGCAAAAGGATAGTACTATACTAATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAaagaag < 2:543731/140‑1 (MQ=255) aaaTACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAG‑ACGGAGAAATACGAAATAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAagaaga > 2:15191/1‑141 (MQ=255) aCAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTAATTTCTACTGAGGAAGTTAAAGAAGaaaaa > 2:505230/1‑140 (MQ=255) aCAAGAAGTGCAAAAGGATTTGACTATACTAATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAAc < 1:769950/141‑1 (MQ=255) cAAGAAGTGTAAAAGAATTTTACTATACTAATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTAAAAATAAAA‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACa < 2:777688/141‑1 (MQ=255) cAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCCTTTCTACTGAGGAAGTgaaaacagaaaaca > 2:600152/1‑141 (MQ=255) aaagaagTGCAAAAGGATTATACTATACTAATGACATAAAG‑ACGGAGAAATACGAAGTAGCTAAAAAAAAAA‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACa < 2:821627/140‑1 (MQ=255) gTGCAAAAGGATTTTACTATACTAATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATaaaaa > 2:364500/1‑141 (MQ=255) gCAAAAGGATTTTACTATACTAATGAAATACAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AGAAAAAATATCCAGTTAAAATACTTAATAATAAATTCATATCTCCTGAGACAGTTACAGACACACACATaaatata > 2:883703/1‑137 (MQ=255) gCAAAAGGATTTTACTATACTAATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATaaaaaaa > 2:385740/1‑141 (MQ=255) aaGGATTTTACTATACTAATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGaaa > 1:616470/1‑141 (MQ=255) gATTTTACTATACTAATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCg < 2:555500/141‑1 (MQ=255) ctatactaATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTAATGGGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACtt < 1:648026/141‑1 (MQ=255) atatactaATGAAATAAAG‑ACTGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAATTATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACtt < 2:467244/140‑1 (MQ=255) tatactaATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACttt < 1:318658/141‑1 (MQ=255) tatactaATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACttt < 2:20414/141‑1 (MQ=255) atactaATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAACAAGAAAACATAAAAAAAGAAATCGAAAACTTTa > 1:734338/1‑141 (MQ=255) accaataaaataaAA‑ACGGAGGAATGCGAAGTAGCTAAAAAAAAAC‑‑AAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGt < 2:79902/138‑1 (MQ=37) aataataaAAAAAAG‑ACGGAGAAACACGAATTAGCTAAAAAAAAAA‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAg < 2:22742/139‑1 (MQ=37) gcaaTGAAATAAGA‑ACAGACAAATACTAATTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATTATTAATAATAAATTCATTTCTACTGAGGAAGTTCAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGt < 2:221880/139‑1 (MQ=37) ctaATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAGGAAAAAAATGACTACTCAGGAAGTTAAAGAAGAAAAAATAAAAAAAGAAATCGAAAACTTTAAGt > 1:448616/1‑141 (MQ=37) aaTGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGttt < 1:313748/141‑1 (MQ=255) aaTAAAG‑ACGGAGACATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTACAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTga > 1:494144/1‑140 (MQ=255) aaTAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTCAGTTATTTgc > 2:403061/1‑141 (MQ=255) aaTAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTgc < 1:579906/141‑1 (MQ=255) aaTAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTgc < 1:43089/141‑1 (MQ=255) aTAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTgcg < 1:506883/141‑1 (MQ=255) aaaaT‑ACAGAAAAATACGAAATAACACAGAAAAAAA‑AAAAAAAAAAACCAGTTAAAAAGATAAAAAATAAATTCATTTATACTGAGGAAGTTAAAGAAAAAAAAAAAAAAAAAGAAATCGAAAACTTTAAGTTTTTTgcgc < 2:617145/140‑1 (MQ=19) aaaaG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTgcgc < 1:543754/140‑1 (MQ=255) aaaG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTCAAACGAGTAATAATATATTCATTTCTACTGAGGAAGTTAGAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCa > 2:383471/1‑141 (MQ=38) aaaG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTTCGCa > 2:136711/1‑141 (MQ=255) aaaG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCa > 2:849179/1‑141 (MQ=255) aaaG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCa > 1:376381/1‑141 (MQ=255) aaaG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCa > 2:484207/1‑141 (MQ=255) aaG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCaa < 1:132697/141‑1 (MQ=255) aaG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCaa > 1:491833/1‑141 (MQ=255) aaG‑ACGGAGAAATACGAAGTAGCTCAGAATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCaa < 2:660602/141‑1 (MQ=255) aG‑ACGGAGAAATGCGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAAGATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAat > 1:667357/1‑141 (MQ=255) aG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAat > 1:136187/1‑141 (MQ=255) aCGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAataa > 2:197183/1‑140 (MQ=255) cGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAAtata < 1:31080/141‑1 (MQ=255) cGGAGAAATACGAAGTAGCTCAGGATAATA‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAAtata > 1:654569/1‑141 (MQ=255) gagaAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGc < 1:334879/141‑1 (MQ=255) gagaAATACGAAGTAGATCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGc < 2:124929/141‑1 (MQ=255) aaaTACGAAGTAGCTCAGGATAATC‑AAAACCCATATCCAGATAAAACGATTAATATTCAATTAATATATACAGAGACAGTAGTAGTACCAGATATAATAAAATTAATCTATAATTTTAAGTTTTTTTCGCAATATAGCAAt > 2:81933/1‑141 (MQ=255) aaaTACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAAt > 2:449599/1‑141 (MQ=255) aaaTACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAAt > 1:849101/1‑141 (MQ=255) aaaTACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAAt < 1:211849/141‑1 (MQ=255) attcGAAGTGGTTAAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAAttt < 2:120119/138‑1 (MQ=255) atgtgaaggtgCTTAGGATAATCAAAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAAtt < 2:410226/131‑1 (MQ=37) aTACGAAGTAGCTCAGGATAATC‑AAAAAGAATATCCAGTTAAAATGATTAATAAGAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAAttt > 1:608741/1‑141 (MQ=255) aCGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTa < 1:887741/141‑1 (MQ=255) aaGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAg < 2:738128/141‑1 (MQ=255) aaGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAg < 1:561644/141‑1 (MQ=255) tCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAAt < 1:364500/141‑1 (MQ=255) ggATAATC‑AAAAACAATATCCAGTTAAAATGAATAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGaa < 2:680331/141‑1 (MQ=255) aaaTC‑AAAAAAAATATCTCGTTAAAATGATTAATAATATAATCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAATACTTTAAGTTTTTTGCGCAATATAGCAATCTTAAAGATTTAATGAATta < 1:612610/140‑1 (MQ=37) aaTC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATtat < 1:502476/141‑1 (MQ=255) aTC‑AAAAAAAATATCCCGTTAAAATAATTAATAATAAATTCATTTCTACTGCGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGGAATATAGCAATTTTACAGATTTAATGAATtata > 2:321558/1‑141 (MQ=37) tC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTc < 1:824072/40‑1 (MQ=255) tC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATaa > 1:222652/1‑141 (MQ=255) | AAATGGCAATTCAAAATAAAGGAGAAGCTCTAAAAATAAAAGGCATGCTTTTGAAGATAGATAGAAATACAAGAAGTGCAAAAGGATTTTACTATACTAATGAAATAAAG‑ACGGAGAAATACGAAGTAGCTCAGGATAATC‑AAAAAAAATATCCAGTTAAAATGATTAATAATAAATTCATTTCTACTGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAA > CP000730/111190‑111470 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |