Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 587,957 G→T 11.4% A621S (GCG→TCG)  rpoB → DNA‑directed RNA polymerase subunit beta

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP000730587,9570GT11.4% 241.2 / 14.3 86A621S (GCG→TCG) rpoBDNA‑directed RNA polymerase subunit beta
Reads supporting (aligned to +/- strand):  ref base G (31/44);  new base T (8/2);  total (39/47)
Fisher's exact test for biased strand distribution p-value = 3.87e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.88e-01

CACAAGCAAACTCTAAATTAGATGAAAATGGTCGTTTCATGGATGATGAAGTTGTATGTCGTTTCCGTGGTAACAATACAGTTATGGCTAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGTGCCTTTGATGAATCCAGAAGCACCATTTGTTGGTACAGGTATGGAACACGTTGCAGCACGT  >  CP000730/587817‑588097
                                                                                                                                            |                                                                                                                                             
cacaAGCAAACTCTAAATTAGATGAAAATGGTCGTTTCATGGATGATGAAGTTGTATGTCGTTTCCGTGGTAACAATACAGTTATTGCTAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTcagcag                                                                                                                                               <  2:730343/141‑1 (MQ=255)
       aaaCTCTAAATTAGAGGAAAATGGTCGTTTCATGGATGATGAAGTTGTATGTCGTTTCTGTGGTATCAATACAGTTAAAAAAAAAAAAAAAATGGATTATATGGATGTATCGCCAAAGCAAGTTGTTTCAGCAGCGACAGc                                                                                                                                        <  2:52311/141‑1 (MQ=255)
           tctAAATTAGATGAAAATGGTCGTTTCATGGATGATGAAGTTGTATGTCGTTTCCGTGGTAACAATACAGTTATGGCTAAAGAAAAAATGGCTTATATGGATGTATCGCCGAACCAACTTGTTTCAGCATCGCCACCATGt                                                                                                                                    >  2:214278/1‑141 (MQ=255)
           tctAAATTAGATGAAAATGGTCGTTTCATGGATGATGAAGTTGTATGTCGTTTCCGTGGTAACAATACAGTTATGGCTAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCATCGACAGCATGt                                                                                                                                    >  1:554896/1‑141 (MQ=255)
           tctAAATTAGATGAAAATGGTCGTTTCATGGATGATGAAGTTGTATGTCGTTTCCGTGGTAACAATACAGTTATGGCTAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGt                                                                                                                                    <  1:848636/141‑1 (MQ=255)
              aaaGTAGATGAAACTGGTCGTTTCATGGATGATGTAGTTGTATGTCGTTTCCGTGGTAACAATACAGTTATGGCTAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCGAGTTGTTTCAGCAGCGACAGCATGTAtt                                                                                                                                 <  2:559153/141‑1 (MQ=255)
                    gATGAAAATGGTCGTTTCATGGATGATGAAGTTGTATGTCGTTTCCGTGGTAAAAATACAGTTATGGCTAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTc                                                                                                                           <  2:399664/141‑1 (MQ=255)
                     aTGAAAATGGTCGTTTCATGGATGATGAAGTTGTATGTCGTTTCCGTGGTAACAATACAGTTATGGCTAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCt                                                                                                                          <  2:480377/141‑1 (MQ=255)
                         aaaTGGTCTTTTCATGGATGATGCATTTGTATGTCGTTTCCGTGGTAACAATACAGTTATGGCTAAAGAAAAAATGTATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGa                                                                                                                      <  2:365289/141‑1 (MQ=255)
                         aaaTGGTCGTTTCACGGATGACTAAGTTGTATGTCGTTTCCGTGGTAACAATACAGTTATGGCTAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGa                                                                                                                      <  1:101532/141‑1 (MQ=255)
                            tGGTCGTTTCATGGATGATGAAGTTGTATGTCGTTTCCGTGGTAACAATACAGTTATGGCTAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGGGACAGCATGTATTCCTTTCTTAGaaaa                                                                                                                   >  1:99617/1‑141 (MQ=255)
                            tGGTCGTTTCATGGATGATGAAGTTGTATGTCGTTTCCGTGGTAACAATACAGTTATGGCTAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCCTTCTTAGaaaa                                                                                                                   >  1:483709/1‑141 (MQ=255)
                              gTCGTTTCATGGATGATGAAGTTGTATGTCGTTTCCGTGGTAACAATACAGTTATGGCTAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCATCGACAGCATGTATTCCATTCTTAGAAAatg                                                                                                                 >  1:805476/1‑141 (MQ=255)
                                cGTTTCATGGATGATGAAGTTGTATGTCGTTTCCGTGGTAACAATACAGTTATGGCTCAAGAAAAAATGGATTATATGGAGGTATCGCCGAAGCAAGTTGTTTCAGCATCGACAGCATGTGTTCCATTTTTAGagaagcaa                                                                                                               >  1:843451/1‑137 (MQ=255)
                                cGTTTCATGGATGATGAAGTTGTATGTCGTTTCCGTGGTAACAATACAGTTATGGCTAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCATCGACAGCATGTATTCCATTCTTAGAAAatgat                                                                                                               >  2:46410/1‑141 (MQ=255)
                                cGTTTCATGGATGATGAAGTTGTATGTCGTTTCCGTGGTAACAATACAGTTATGGCTAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCCTGTATTCCATTCTTAGAAAatgat                                                                                                               >  2:254430/1‑141 (MQ=255)
                                cGTTTCATAGATGATGAAGTTGTATGTCGTTTCCGTGGTAACAATACAGTTATGGCTAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCATCAGCGACAGCATGTATTCCATTCTTAGAAAatgat                                                                                                               <  1:814525/141‑1 (MQ=255)
                                      attgatgattgatgtGTATGTCGTTTCCTTAGTAACAATACAGTTATGGCTAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCTACAGCATGTATTCCATTCTTAGAAAATGATGACTCa                                                                                                         <  2:694464/127‑1 (MQ=255)
                                      aTGGATGATGCAGTTGTATGTCGTTTCCGTGGTAACAATACAGTTATGGCTAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGATACAGGGCTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCa                                                                                                         >  1:681815/1‑141 (MQ=255)
                                        ggATGATGAAGTTGTATGTCGTTTCCGTGGTAACAATACAGTTATGGCTAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCaaa                                                                                                       <  2:933626/141‑1 (MQ=255)
                                        ggATGATGAAGTTGTATGTCGTTTCCGTGGTAACAATACAGTTATGGCTAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCaaa                                                                                                       >  1:738159/1‑141 (MQ=255)
                                        ggATGATGAAGTTGTATGTCGTTTCCGTGGTAACAATACAGTTATGGCTAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCaaa                                                                                                       <  2:541913/141‑1 (MQ=255)
                                        ggATGATGAAGTGGGATGTCGATTCCGTGGTAACAATACAGTTATGGCTAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGGCTCaaa                                                                                                       <  2:212826/141‑1 (MQ=255)
                                           tgatgaAGTTGTATGTCGTTTCCGTTGTAACAATACAGTTATGGCTAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCg                                                                                                    <  1:277389/141‑1 (MQ=255)
                                           tgatgaAGTTGTATGTCGTTGCCGTGGTAACAATACAGTTATGGCTAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCg                                                                                                    <  1:438702/141‑1 (MQ=255)
                                               gaAGTTGTATGTCGTTTCCGTGGTAACAATACAGTTATGGCTAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCa                                                                                                >  2:17526/1‑141 (MQ=255)
                                                 aGTTGTATGTCGTTTCCGTGGTAACAATACAGTTATGGCTAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCAtt                                                                                              <  2:347147/141‑1 (MQ=255)
                                                    tGTATGTCGTTTCCGTGGTAACAATACAGTTATGGCTAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTCTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGAt                                                                                           <  1:310563/141‑1 (MQ=255)
                                                     gTATGTCGTTTCCGTGGTAACAATACAGTTATGGCTAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGAAAGCATGTATTCCATTCTTAGAAAATGGTGACTCAAAACGGGCAATggag                                                                                          >  2:213678/1‑138 (MQ=255)
                                                      tATGTCGTTTCCGTGGTAACAATACAGTTATGGCTAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATgg                                                                                        >  1:556567/1‑141 (MQ=255)
                                                        tGTCGTTTCCGTGGTAACAATACAGTTATGGCTAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTAAGAAAAGGATGACTCAAACCGTGCAGTGATgggg                                                                                      >  2:617392/1‑140 (MQ=255)
                                                                 cGTGGTAACAATACAGTTATGGCTAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATg                                                                             >  1:338061/1‑141 (MQ=255)
                                                                  gTGGTAACAATACAGTTATGGCTAAAGAAAAAATGGATTATATGGAGGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGAGGGGTGCGAAAATGc                                                                            >  2:715797/1‑141 (MQ=255)
                                                                   tGGTAACAATACAGTTATGGCTAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCa                                                                           >  2:87337/1‑141 (MQ=255)
                                                                    ggTAACAATACAGTTATGGCTAAAGAAAAAATGGATTACATGGATGGAGCGCCGAAGCAAGTTGTTTCAGCATCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCaa                                                                          <  1:258593/141‑1 (MQ=255)
                                                                          aaTACAGTTATGGCTAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCaa                                                                    <  1:662390/141‑1 (MQ=255)
                                                                            tACAGTGATGGCTAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGc                                                                  <  2:730003/141‑1 (MQ=255)
                                                                             aCAGTTATGGCTAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCa                                                                 <  1:772431/141‑1 (MQ=255)
                                                                              cAGTTATTGCGAAAGAAAAAATGGATTATATTGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGGGCATTGATGGGTGCGAACATGCAACGTCAAGCAg                                                                <  2:171968/141‑1 (MQ=255)
                                                                              cAGTTATGGCTAAATAAAAAATTGATTATATGGATGTACCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAACGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAg                                                                <  1:619494/141‑1 (MQ=255)
                                                                              cAGTTATGGCTAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAg                                                                <  1:272300/141‑1 (MQ=255)
                                                                              cAGTTATGGCTAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAg                                                                <  2:818198/141‑1 (MQ=255)
                                                                              cAGTTATGGCTAAAGAAAAAATGGATTATATGGATGTATCGCAGAAGGTCTTGGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAg                                                                <  1:923345/141‑1 (MQ=255)
                                                                               aGTTATGGCTAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGt                                                               <  1:828889/141‑1 (MQ=255)
                                                                               aGTTATGGCTAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGt                                                               <  1:887658/141‑1 (MQ=255)
                                                                                 ttATGGCTAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGTGc                                                             <  2:221027/141‑1 (MQ=255)
                                                                                   aTGGCTAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGTGCCt                                                           <  1:241271/141‑1 (MQ=255)
                                                                                     gggtAAAGGAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTGAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGTGCCttt                                                         <  2:795861/138‑1 (MQ=255)
                                                                                     ggCTAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGTGCCttt                                                         <  1:855736/141‑1 (MQ=255)
                                                                                        tAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGTGCCTTtgat                                                      >  1:753795/1‑141 (MQ=255)
                                                                                        tAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGTGCCTTtgat                                                      >  1:492896/1‑141 (MQ=255)
                                                                                         aaaGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCATCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAGGCAGTGCCTTtgatg                                                     <  1:700666/141‑1 (MQ=255)
                                                                                         aaaGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGTGCCTTtgatg                                                     <  1:271046/141‑1 (MQ=255)
                                                                                         aaaGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGTGCCTTtgatg                                                     <  1:719164/141‑1 (MQ=255)
                                                                                              aaaaaTGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGTGCCTTTGATGAATcc                                                >  1:861529/1‑141 (MQ=255)
                                                                                              aaaaaTGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGTGCCTTTGATGAATcc                                                >  1:76233/1‑141 (MQ=255)
                                                                                                 aaTGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGTGCCTTTGATGAATCCAGa                                             >  1:158721/1‑141 (MQ=255)
                                                                                                   tGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGTGCCTTTGATGAATCCAGAAg                                           >  2:165193/1‑141 (MQ=255)
                                                                                                     gATTATTTGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGTGCCTTTGATGAATCCAGAAGCa                                         <  2:621974/141‑1 (MQ=255)
                                                                                                     gATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGTGCCTTTGATGAATCCAGAAGCa                                         <  2:813114/141‑1 (MQ=255)
                                                                                                      aTTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGTGCCTTTGATGAATCCAGAAGCAc                                        <  1:622651/141‑1 (MQ=255)
                                                                                                      aTTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGTCCCGTTGATGAATCCAGAAGccc                                        >  1:320925/1‑139 (MQ=255)
                                                                                                       ttATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTATAAAATGATGACTCAAACCGTGCATCGATGGGTGCGAACATGCAACGTCAAGCAGTGCCTTTGATGAATCCAGAAGCAcc                                       <  1:608510/141‑1 (MQ=255)
                                                                                                        tataTGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGCGCGAACATGCAACGTCAAGCAGTGCCTTGGATGAATCCAGacggaaca                                      >  1:831125/1‑134 (MQ=255)
                                                                                                         atatGGATGTATCGCCGAAGCAAGTTGTTTCAGCATCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGTGCCTTTGATGAATCCAGAAGCACCAt                                     >  1:564658/1‑141 (MQ=255)
                                                                                                         atatGGATGTATCGCCGAAGCAAGTTGTTTCAGCATCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATAGCTGCACCGCGCTGGGCAACGTCAAACAGTGCGTATGATGAATCCAGAAGCACCAt                                     >  1:213523/1‑141 (MQ=255)
                                                                                                         atatGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGTGCCTTTGATGAATCCAGAAGCACCAt                                     >  1:399109/1‑141 (MQ=255)
                                                                                                              gATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGTGCCTTTGATGATTCCACAAGCACCATttgtt                                <  1:519660/141‑1 (MQ=255)
                                                                                                                tggaTCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGTGCCTTTGATGAATCCAGAAGCACCATTTGTTgg                              <  2:743720/138‑1 (MQ=255)
                                                                                                                    tCGCCGAAGCAAGTTGTCTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGTGCCTTTGATGAATCCAGAAGCACCACTTGTTGGAACa                          >  2:79130/1‑141 (MQ=255)
                                                                                                                     cGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGTGCCTTTGATGAATCCAGAAGCACCATTTGTTGGTACAg                         <  2:539560/141‑1 (MQ=255)
                                                                                                                     cGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGTGCCTTTGATGAATCCAGAAGCACCATTTGTTGGTACAg                         >  2:354971/1‑141 (MQ=255)
                                                                                                                      gCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAGAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGTGCCTTTGATGAATCCAGAAGCACCATTTGTTGGTACAgg                        >  2:307387/1‑141 (MQ=255)
                                                                                                                      gCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGTGCCTTTGATGAATCCAGAAGCACCATTTGTTGGTACAgg                        >  2:691687/1‑141 (MQ=255)
                                                                                                                      gCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGTGCCTTTGATGAATCAAGAGGCACCATTTGTGGGTACAgg                        >  2:642638/1‑141 (MQ=255)
                                                                                                                      gCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTGAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGTGCCTTTGATGAATCCAGAAGCACCATTTGTTGGTACAgg                        >  2:501559/1‑141 (MQ=255)
                                                                                                                       ccGAAGCAAGTTGTTTCAGCATCGACAGCATGTATTCCATTCTTAGAAAATGAAGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGTGCCTTTGATGAATCCAGAAGCACCATTTGTTGGTACAGGt                       >  1:81916/1‑141 (MQ=255)
                                                                                                                          aaGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGTGCCTTTGATGAATCCAGAAGCACCATTTGTTGGTACAGGTATg                    <  1:250633/141‑1 (MQ=255)
                                                                                                                          aaGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGTGCCTTTGATGAATCCAGAAGCACCATTTGTTGGTACAGGTATg                    <  2:353431/141‑1 (MQ=255)
                                                                                                                             cAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGTGCCTTTGATGAATCCAGAAGCACCATTTGTTGGTACAGGTATGGaa                 <  2:738159/141‑1 (MQ=255)
                                                                                                                              aaGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGTGCCTTTGATGAATCCAGAAGCACCCTTTGTTGGTACAGGTATGGAac                >  2:334818/1‑141 (MQ=255)
                                                                                                                              aaGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGTGCCTTTGATGAATCCAGAAGCACCATTTGTTGGTACAGGTATGGacc                >  1:887990/1‑139 (MQ=255)
                                                                                                                              aaGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGTGCCTTTGATGAATCCAGAAGCACCATTTGTTGGTACAGGTATGGAac                <  1:21392/141‑1 (MQ=255)
                                                                                                                              aaGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGTGCCTTTGATGAATCCAGAAGCACCATTTGTTGGTACAGGTATGGAac                <  1:476497/141‑1 (MQ=255)
                                                                                                                              aaGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGTGCCTTTGATGAATCCAGAAGCACCATTTGTTGGTACAGGTATGGAac                >  1:396701/1‑141 (MQ=255)
                                                                                                                               aGTTGTTTCAGTAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGTGCCTTTGATGAATCCAGAAGCACCATTTGTTGGTACAGGTATGGCacg               >  1:194205/1‑140 (MQ=255)
                                                                                                                                tctatttCAGCACCCACAGCATGTATTCTATTCTTAGAAAATCATGACTCACACCGTGCATTGATGGGCGCGAACATGCAACGTCAAGCAGTGCATTTGATGAATCCAGAAGCACCATTTGTTGGTACAGGTATGGAaccc              <  2:477308/137‑3 (MQ=255)
                                                                                                                                         gcatcGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGTGCCTTTGATGAATCCAGAAGCACCATTTGTTGGTACAGGTATGGAACACGTTgcagca     <  1:46410/141‑1 (MQ=255)
                                                                                                                                           agcGACAGCATGTATTCCATGCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGGGCGAACATGCAACGTCAAGCAGTGCCTTTGATGAATCCAGAAGCACCATTTGTTGGTACAGGTATGGAGCACGTTGCAGCACg   >  2:876912/1‑141 (MQ=255)
                                                                                                                                            gcGACAGCATGTATTCCATTCTTAGAAAATGATGACGCAAAACGTGCGTTGACGGGTGCGAAGAGGCAAAGTCAAGCAGTGGCCTGCATGGATCAAGAAGGACCAGTTTTTGGGACGGGTATGGAAGCCGTTgcagccagt  >  2:298986/1‑137 (MQ=255)
                                                                                                                                            |                                                                                                                                             
CACAAGCAAACTCTAAATTAGATGAAAATGGTCGTTTCATGGATGATGAAGTTGTATGTCGTTTCCGTGGTAACAATACAGTTATGGCTAAAGAAAAAATGGATTATATGGATGTATCGCCGAAGCAAGTTGTTTCAGCAGCGACAGCATGTATTCCATTCTTAGAAAATGATGACTCAAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCAGTGCCTTTGATGAATCCAGAAGCACCATTTGTTGGTACAGGTATGGAACACGTTGCAGCACGT  >  CP000730/587817‑588097

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: