New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	693013 =	48 (0.880)	3 (0.060)	3/248	3.4	5.9%	intergenic (‑40/+135)	USA300HOU_0635/USA300HOU_0636	possible replication initiation protein/hypothetical protein
	?	CP000730	693128 =	52 (1.030)					intergenic (‑155/+20)	USA300HOU_0635/USA300HOU_0636	possible replication initiation protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TATTGATGTTTAACATATAGTATTAGTGATTTAACATGACCGTGTAGCTTTTAGCGTATGCAGGCGCAGAAATGCAAGCACGGAGTGCGTTAAGCATTTGGGCGGAGCCTGCGACAAATACGCGTTAAAAAAGCGAGAACGGTCATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/693160‑693013 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggtcatgtTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCAAATTCACTTGTAGCATTCTGCCATGTCCTGCTTCACTCAAGCTCATACACAATAGACAAAGGTCAGCGTAAATTTTAGGCC  >  CP000730/693128‑693266                                                                                                                                                                                                                                                                                                 TATTGATGTTTAACATATAGTATTAGTGATTTAACATGACCGTGTAGCTTTTAGCGTATGCAGGCGCAGAAATGCAAGCACGGAGTGCGTTAAGCATTTGGGCGGAGCCTGCGACAAATACGCGTTAAAAAAGCGAGAACG                                                                                                                                                    <  1:483621/141‑1   TTGATGTTTAACATATAGTATTAGTGATTTAACATGACCGTGTAGCTTTTAGCGTATGCAGGCGCAGAAATGCAAGCACGGAGTGCGTTAAGCATTTGGGCGGAGCCTGCGACAAATACGCGTTAAAAAAGCGAGAACGGT                                                                                                                                                  >  1:356764/1‑141        gtgtagCATATAGTATTAGTGATTTAACATGACCGTGTAGCTTTTAGCGTATGCAGGCGCAGAAATGCGAGCACGGAGTGCGTTAAGCATTTGGGCGGAGCCTGCGACAAATACGCGTTAAAAAAGCGAGAACGGTCATGT                                                                                                                                             <  2:69814/135‑1                                                 TTTTAGCGTATGCAGGCGCAGAAATGCAAGCACGGAGTGCGTTAAGCATTTGGGCGGAGCCTGCGACAAATACGCGTTAAAAAAGCGAGAACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAAT                                                                                                    >  2:89850/1‑141                                                                                           TAAGCATTTGGGCGGAGCCTGCGACAAATACGCGTTAAAAAAGCGAGAACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCAAATTCACTTGTAGCATTCTGCCATG                                                          >  2:376275/1‑141                                                                                               CATTTGGGCGGAGCCTGCGACAAATACGCGTTAAAAAAGCGAGAACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCAAATTCACTTGTAGCATTCTGCCATGTCCT                                                      <  1:376275/141‑1                                                                                                                                                  TGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCAAATTCACTTGTAGCATTCTGCCATGTCCTGCTTCACTCAAGCTCATACACAATAGACAAAGGTCAGCGTAAATTTTAGGC   >  1:480113/1‑141                                                                                                                                                   GTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCAAATTCACTTGTAGCATTCTGCCATGTCCTGCTTCACTCAAGCTCATACACAATAGACAAAGGTCAGCGTAAATTTTAGGCC  >  1:445721/1‑141                                                                                                                                                   GTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCAAATTCACTTGTAGCATTCTGCCATGTCCTGCTTCACTCAAGCTCATACACAATAGACAAAGGTCAGCGTAAATTTTAGGCC  >  1:445719/1‑141                                                                                                                                                   GTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCAAATTCACTTGTAGCATTCTGCCATGTCCTGCTTCACTCAAGCTCATACACAATAGACAAAGGTCAGCGTAAATTTTAGGCC  >  1:18507/1‑141                                                                                                                                                                                                                                                                                                 TATTGATGTTTAACATATAGTATTAGTGATTTAACATGACCGTGTAGCTTTTAGCGTATGCAGGCGCAGAAATGCAAGCACGGAGTGCGTTAAGCATTTGGGCGGAGCCTGCGACAAATACGCGTTAAAAAAGCGAGAACGGTCATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/693160‑693013 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggtcatgtTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCAAATTCACTTGTAGCATTCTGCCATGTCCTGCTTCACTCAAGCTCATACACAATAGACAAAGGTCAGCGTAAATTTTAGGCC  >  CP000730/693128‑693266

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.