| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 943914 = | 91 (1.660) | 3 (0.060) | 3/256 | 3.4 | 3.7% | coding (969/1497 nt) | mnhD2 | CPA3 family monovalent cation:proton (H+) antiporter‑3 subunit D |
| ? | CP000730 | 943963 = | 71 (1.360) | coding (920/1497 nt) | mnhD2 | CPA3 family monovalent cation:proton (H+) antiporter‑3 subunit D | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CACATTATGTCATTTTATTCTTAGCACTATTAACGATCATCTTTGGTTGTGTCGGTGCTGTTGCATATGCCAACATTAAAAAAATCATCCTATACAATGTCATGATTGCTGTAGGTGTGATCTTAGTCGGCGTTGCAATGATGACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/944059‑943914‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgacaTTGTATAGGATGATTTTTTTAATGTTGGCATATGCAACAGCACCGACACAACCAAAGATGATCGTTAATAGTGCTAAGAATAAAATGACATAATGTGAAAAGCTTACATTATCACTAAAGAATAGGCTCAATGTTCTAGC > CP000730/943963‑944102 CACATTATGTCATTTTATTCTTAGCACTATTAACGATCATCTTTGGTTGTGTCGGTGCTGTTGCATATGCCAACATTAAAAAAATCATCCTATACAATGTCATGATTGCTGTAGGTGTGATCTTAGTCGGCGTTGCAATGA > 1:333232/1‑141 CATTATGTCATTTTATTCTTAGCACTATTAACGATCATCTTTGGTTGTGTCGGTGCTGTTGCATATGACAACATTAAAAAAATCATCCTATACAATGTCATGATTGCTGTAGGTGTGATCTTAGTCGGCGTTGCAATGATG < 2:208283/141‑1 ATTATGTCATTTTATTCTTAGCACTATTAACGATCATCTTTGGTTGTGTCGGTGCTGTTGCATATGCCAACATTAAAAAAATCATCCTATACAATGTCATGATTGCTGTAGGTGTGATCTTAGTCGGCGTTGCAATGATGA < 1:214618/141‑1 TATGTCATTTTATTCTTAGCACTATTAACGATCATCTTTGGTTGTGTCGGTGCTGTTGCATATGCCAACATTAAAAAAATCATCCTATACAATGTCATGATTGCTGTAGGTGTGATCTTAGTCGGCGTTGCAATGATGACA > 2:546298/1‑141 TATGTCATTTTATTCTTAGCACTATTAACGATCATCTTTGGTTGTGTCGGTGCTGTTGCATATGCCAACATTAAAAAAATCATCCTATACAATGTCATGATTGCTGTAGGTGTGATCTTAGTCGGCGTTGCAACGATGACA < 1:510513/141‑1 ATTCTTAGCACTATTAACGATCATCTTTGGTTGTGTCGGTGCTGTTGCATATGCCAACATTAAAAAAATCATCCTATACAATGTCATGATTGCTGTAGGTGTGATCTTAGTCGGCGTTGCAATGATG < 2:138523/127‑1 ATTCTTAGCACTATTAACGATCATCTTTGGTTGTGTCGGTGCTGTTGCATATGCCAACATTAAAAAAATCATCCTATACAATGTCATGATTGCTGTAGGTGTGATCTTAGTCGGCGTTGCAATGATG > 1:138523/1‑127 ATGTCATGATTGCTGTAGGTGTGATCTTAGTCGGCGTTGCAATGATGACATTGTATAGGATGATTTTTTTAATGTTGGCATATGCAACAGCACCGACACAACCAAAGATGATCGTTAATAGTGCTAAGAATAAAATGACAT > 2:94878/1‑141 GTCATGATTGCTGTAGGTGTGATCTTAGTCGGCGTTGCAATGCTGACATTGTATAGGATGATTTTTTAAATGTTGGCATTTGCAACAGCACCGCCACAACCAAAGATGATCGTTAATAGTGCTAAGAATAAAATGACATAA > 1:552968/1‑141 ATTGCTGTAGGTGTGATCTTAGTCGGCGTTGCAATGATGACATTGTATAGGATGATTTTTTTAATGTTGGCATATGCAACAGCACCGACACAACCAAAGATGATCGTTAATAGTGCTAAGAATAAAATGACATAATGTGAA > 1:587793/1‑141 ATGACATTGTATAGGATGATTTTTTTTTTTTTTTCATATGCAACAGCACCGACACAACCAAAGATGATCGTTAATAGTGCTAAGAATAAAATGACATAATGTGAAAAGCTTACATTATCACTAAAGAATAGGCTCAATGTT > 2:635634/1‑141 ATGACATTGTATAGGATGATTTTTTTAATGTTGGCATATGCAACAGCACCGACACAACCAAAGATGATCGTTAATAGTGCTAAGAATAAAATGACATAATGTGAAAAGCTTACATTATCACTAAAGAATAGGCTCAATGTT < 1:57232/141‑1 ATGACATTGTATAGGATGATTTTTTTAATGTTGGCATATGCAACAGCACCGACACAACCAAAGATGATCGTTAATAGTGCTAAGAATAAAATGACATAATGTGAAAAGCTTACATTATCACTAAAGAATAGGCTCAATGTT > 2:192074/1‑141 ATGACATTGTATAGGATGATTTTTTTAATGTTGGCATATGCAACAGCACCGACACAACCAAAGATGATCGTTAATAG > 1:10513/1‑77 ATGACATTGTATAGGATGATTTTTTTAATGTTGGCATATGCAACAGCACCGACACAACCAAAGATGATCGTTAATAG < 2:10513/77‑1 TGACATTGTATAGGATGATTTTTTTAATGTTGGCATATGCAACAGCACCGACACAACCAAAGATGATCGTTAATAGTGCTAAGAATAAAATGACATAATGTGAAAAGCTTACATTATCACTAAAGAATAGGCTCAATGTTC < 1:562848/141‑1 ACATTGTATAGGATGATTTTTTTAATGTTGGCATATGCAACAGCACCGACACAACCAAAGATGATCGTTAATAGTGCTAAGAATAAAATGACATAATGTGAAAAGCTTACATTATCACTAAAGAATAGGCTCAATGTTCTA < 2:250986/141‑1 ATTGTATAGGATGATTTTTTTAATGTTGGCATATGCAACAGCACCGACACAACCAAAGATGATCGTTAATAGTGCTAAGAATAAAATGACATAATGTGAAAAGCTTACATTATCACTAAAGAATAGGCTCAATGTTCTAGC < 2:386852/141‑1 ATTGTATAGGATGATTTTTTTAATGTTGGCATATGCAACAGCACCGACACAACCAAAGATGATCGTTAATAGTGCTAAGAATAAAATGACATAATGTGAAAAGCTTACATTATCACTAAAGAATAGGCTCAATGTTCTAGC < 1:288330/141‑1 CACATTATGTCATTTTATTCTTAGCACTATTAACGATCATCTTTGGTTGTGTCGGTGCTGTTGCATATGCCAACATTAAAAAAATCATCCTATACAATGTCATGATTGCTGTAGGTGTGATCTTAGTCGGCGTTGCAATGATGACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/944059‑943914‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgacaTTGTATAGGATGATTTTTTTAATGTTGGCATATGCAACAGCACCGACACAACCAAAGATGATCGTTAATAGTGCTAAGAATAAAATGACATAATGTGAAAAGCTTACATTATCACTAAAGAATAGGCTCAATGTTCTAGC > CP000730/943963‑944102 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |