Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	CP000730	2348344	2348423	80	2 [1]	[1] 3	USA300HOU_2204	hypothetical protein

ATGATTCGATTTTTGTATTGAATTCTTCTTTAACATAGTTAGAAGAAAAAACAATTTCAAATATTGGTTTAATAAATAAAATATAAAAACCATACTCTACATCAAACTTGTTTTCGAATAAATGTTTTACAATTTTCTCCAATTCACCACTTAAGTATACCTCAATATTGTAACCAT  >  CP000730/2348203‑2348379                                                                                                                                             |                                     atgatTCGATTTTTGTATTGAATTCTTCTTTAACATAGTTAGAAGAAAAAACAATTTCAAATATTGGTTTAATAAATAAAATATAAAAACCATACTCTACATCAAACTTGTTTTCGAATAAATGTTTTACAATTTTCTCCa                                      >  2:35643/1‑141 (MQ=255)                                     aGTTAGAAGAAAAAACAATTTCAAATATTGGTTTAATAAATAAAATATAAAAACCATACTCTACATCAAACTTGTTTTCGAATAAATGTTTTACAATTTTCTCCAATTCACCACTTAAGTATACCTCAATATTGTAACCAt  <  2:178532/141‑1 (MQ=255)                                                                                                                                             |                                     ATGATTCGATTTTTGTATTGAATTCTTCTTTAACATAGTTAGAAGAAAAAACAATTTCAAATATTGGTTTAATAAATAAAATATAAAAACCATACTCTACATCAAACTTGTTTTCGAATAAATGTTTTACAATTTTCTCCAATTCACCACTTAAGTATACCTCAATATTGTAACCAT  >  CP000730/2348203‑2348379

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑