Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	CP000730	352812	352862	51	3 [1]	[0] 2	USA300HOU_0321/USA300HOU_0322	hypothetical protein/hypothetical protein

AATTATAAATAGTTAAATATTTGGGAATTAAATAAATATATAGGAGGCAATTTTTAGAGATACATAGCAATGTAAAGGTATCAAATAGTTATTTCATAATTTATTAT  >  CP000730/352863‑352969 |                                                                                                           aaTTATAAATAGTTAAATATTTGGGAATTAAATAAATATATAGGAGGCAATTTTTAGAGATACATAGCAATGTAAAGGTATCAAATAGTTATTTCATAATTtattat  >  1:49938/1‑107 (MQ=255) aaTTATAAATAGTTAAATATTTGGGAATTAAATAAATATATAGGAGGCAATTTTTAGAGATACATAGCAATGTAAAGGTATCAAATAGTTATTTCATAATTtattat  <  2:49938/107‑1 (MQ=255) |                                                                                                           AATTATAAATAGTTAAATATTTGGGAATTAAATAAATATATAGGAGGCAATTTTTAGAGATACATAGCAATGTAAAGGTATCAAATAGTTATTTCATAATTTATTAT  >  CP000730/352863‑352969

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑