| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 1343877 = | 83 (0.800) | 3 (0.030) | 3/248 | NT | 3.9% | coding (14/267 nt) | USA300HOU_1252 | hypothetical protein |
| ? | CP000730 | 1343895 = | 69 (0.700) | coding (32/267 nt) | USA300HOU_1252 | hypothetical protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TACTCACTATTTTACCATGAAACCTATTTGACTTGGTAATAAATTTTACTTGTCCCTTATTAGTAACGATTGTCATTGATTTTATTGATGGATGCTTAAAAAATGTAAATAAATCATATTCTGAAAATCCT‑GACTGTCCAGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1344020‑1343877‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggatTTTCAGAATATGATTTATTTACATTTTTTAAGCATCCATCAATAAAATCAATGACAATCGTTACTAATAAGGGACAAGTAAAATTTATTACCAAGTCAAATAGGTTTCATGGTAAAATAGTGAGTAAATTTTGTGCTA > CP000730/1343895‑1344032 TACTCACTATTTTACCATGCAACCTATTTGACTTGGTAATAAATTTTACTTGTCCCTTAGTAGTAACGATTGTCATTGATTTTATTGATGGATGCTTAAAAAATGTAAATAAATCATATTCTGAAAATCCT‑GACTGTCCAG > 2:667094/1‑141TACTCACTATTTTACCATGAAACCTATTTGACTTGGTAATAAATTTTACTTGTCCCTTATTAGTAACGATTGTCATTGATTTTATTGATGGATGCTTAAAAAATGTAAATAAATCATATTCTGAAAATCCT‑GACTGTCCAG < 1:329671/141‑1TACTCACTATTTTACCATGAAACCTATTTGACTTGGTAATAAATTTTACTTGTCCCGTATTAGTAACGATTGTCATTGATTTTATTGATGGATGCTTAAAAAATGTAAATAAATCATATTCTGAAAATCCT‑GACTGTCCAG < 1:272987/141‑1 ACTCACTATTTTACCATGAAACCTATTTGACTTGGTAATAAATTTTACTTGTCCCTTATTAGTAACGATTGTCATTGATTTTATTGATGGATGCTTAAAAAATGTAAATAAATCATATTCTGAAAATCCT‑GACTGTCCAGG > 2:60078/1‑141 ATTTGACTTGGTAATAAATTTTACTTGTCCCTTATTAGTAACGATTGTCATTGATTTTATTGATGGATGCTTAAAAAATGTAAATAAATCATATTCTGAAAATCCTGGACAGT‑CAGGATTTTCAGAATATGATTTATTTAC < 1:545145/141‑1 TGCTTAAAAAATGTAAATAAATCATATTCTGAAAATCCTGGACAGT‑CAGGATTTTCAGAATATGATTTATTTACATTTTTTAAGCATCCATCAATAAAATCAATGACAATCGTTACTAATAAGGGACAAGTAAAATTTATT < 2:954316/141‑1 TGAAACTCCT‑GACTGTCCAGGATTTTCAGAATATGATTTATTTACATTTTTTAAGCATCCATCAATAAAATCAATGACAATCGTTACTAATAAGGGACAAGTAAAATTTATTACCAAGTCAAATAGGTTTCATGGTAAAAT < 1:954316/141‑1 actATTTTCACAACATGATTGATTTACAGTTTTTAAGCATCCATCAATAAAATCAATGACAATCGTAACGAATAAGGGACAAGGAAAATTTATTACCAAGACAAATAGGTTTCATGGTAAAATAGTGAGTAAATTTTGTGC < 1:583663/138‑1 GATTTTCAGAATATGATTTATTTACATTTTTTAAGCATCCATCAATAAAATCAATGACAATCGTTACTAATAAGGGACAAGTAAAATTTATTACCAAGTCAAATAGGTTTCATGGTAAAGTAGTGAGTAAATTTTGTGCTA < 1:617545/141‑1 GATTTTCAGAATATGATTTATTTACATTTTTTAAGCATCCATCAATAAAATAAATGACAATCGTTACTAATAAGGGACAAGTAAAATTTATTACCAAGTCAAATAGGTTTCATGGTAAAATAGTGAGTAAGTTTTGTGCTA < 1:868253/141‑1 TACTCACTATTTTACCATGAAACCTATTTGACTTGGTAATAAATTTTACTTGTCCCTTATTAGTAACGATTGTCATTGATTTTATTGATGGATGCTTAAAAAATGTAAATAAATCATATTCTGAAAATCCT‑GACTGTCCAGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1344020‑1343877‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggatTTTCAGAATATGATTTATTTACATTTTTTAAGCATCCATCAATAAAATCAATGACAATCGTTACTAATAAGGGACAAGTAAAATTTATTACCAAGTCAAATAGGTTTCATGGTAAAATAGTGAGTAAATTTTGTGCTA > CP000730/1343895‑1344032 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |