Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 1,776,265 C→A 10.9% V87L (GTA→TTA)  clpX ← S14 family endopeptidase ClpX

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007301,776,2650CA10.9% 262.2 / 14.8 95V87L (GTA→TTA) clpXS14 family endopeptidase ClpX
Reads supporting (aligned to +/- strand):  ref base C (41/43);  new base A (6/5);  total (47/48)
Fisher's exact test for biased strand distribution p-value = 7.59e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01

Only 100 of 103 total aligned reads displayed.

CTTGGCTAAGGTTTGAGCTAATAATGTTTTACCACTACCTGTTGGCCCAATTAATGCAATGTTACTTTTTTGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTAGGTAATTCTGTCATCGCTTCAGAAGTGTTTTGAGCTAATTCTTCTTCGACGATTTCTGAGCATAATT  >  CP000730/1776128‑1776405
                                                                                                                                         |                                                                                                                                            
cTTGGCTAAGGTTTGAGCTAATAATGTTTTACCACTACCTGTTGGCCCAATTAATGCAATGTTACTTTTTTGTTTTTCTACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAacagctactgc                                                                                                                                           >  2:78280/1‑141 (MQ=255)
 ttGGCTAAGGTTTGAGCTAATAATGTTTTACCACTACCTGTTGGCCCAATTAATGCAATGTTACTTTTTTGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAacagctacagct                                                                                                                                          <  2:301778/141‑1 (MQ=255)
 ttGGCTAAGGTTTGAGCTAATAATGTTTTACCACTACCTGTTGGCCCAATTAATGCAATGTTACTTTTTTGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAacagctacagct                                                                                                                                          <  2:827106/141‑1 (MQ=255)
    gCTAAGGTTTGAGCTAATAATGTTTTACCACTACCTGTTGGCCCAATTAATGCAATGTTACTTTTTTGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTaaa                                                                                                                                       >  1:157257/1‑141 (MQ=255)
    gCTAAGGTTTGAGCTAATAATGTTTTACCACTACCTGTTGGCCCAATTAATGCAATGTTACTTTTTTGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTaaa                                                                                                                                       <  2:84751/141‑1 (MQ=255)
    gCTAAGGTTTGAGCTAATAATGTTTTACCACTACCTGTTGGCCCAATTAATGCAATGTTACTTTTTTGTAATTCAACATCATCTTCTTTTGGTCCTAATTATTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTaaa                                                                                                                                       <  1:854206/141‑1 (MQ=255)
        aGGTTTGAGTTAATAATGTTTTACCAGTACCTGTTGGCCCAATTAATGCATTGTTACTTTTTTGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGAtt                                                                                                                                   <  2:18832/141‑1 (MQ=255)
        aGGTTTGAGCTAATAATGTTTTACCACTACCTGTTGGCCCAATTAATGCAATGTTACTTTTTTGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGAtt                                                                                                                                   >  1:103215/1‑141 (MQ=255)
        aGGTTTGAGCTAATAATGTTTTACCACTACCTGTTGGCCCAATTAATGCAATGTTACTTTTTTGTAATTCAACATCATCTTCTTTTGGTCCTAATGGTGGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGAtt                                                                                                                                   >  1:1118243/1‑141 (MQ=255)
         ggTTTGAGCTAATAATGTTTTACCACTACCTGTTGGCCCAATTAATGCAATGTTACTTTTTTGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGAttt                                                                                                                                  <  1:732657/141‑1 (MQ=255)
         ggTTTGAGCTAATAATGTTTTACCACTACCTGTTGGCCCAATTAATGCAATGTTACTTTTTTGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTAAAGCTAAAGAttt                                                                                                                                  >  1:822773/1‑141 (MQ=255)
            ttGAGCTAATAATGTTTTACCACTACCTGTTGGCCCAATTAATGCAATGTTACTTTTTTGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGAtttttt                                                                                                                               <  1:1093323/141‑1 (MQ=255)
               aGCTAATAATGTTTTACCACTACCTGTTGGCCCAATTAATGCAATGTTACTTTTTTGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGc                                                                                                                            >  1:188816/1‑141 (MQ=255)
                 cgaataatGTTTTACCACTACCTGTTGGCCTAATTAATGCAATGTTACTTTTTTGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTGGCtt                                                                                                                          <  2:830006/139‑1 (MQ=255)
                   aataatGTTTTACCACTACCTGTTGGCCCAATTAATGCAATGTTACTTTTTTGTAATTCAACATCATCTTCTTTTGGTCCTGATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCtttt                                                                                                                        >  2:49286/1‑141 (MQ=255)
                   aataatGTTTTACCACTACCTGTTGGCCCAATTAATGCAATGTTACTTTTTTGTAATTCAACAACATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCtttt                                                                                                                        >  2:68690/1‑141 (MQ=255)
                      aatGTTTTACCACTACCTGTTGGCCCAATTAATGCAATGTTACTTTTTTGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCt                                                                                                                     <  1:126193/141‑1 (MQ=255)
                        tGTTTTACCACTACCTGTTGGCCCAATTAATGCAATGTTACTTTTTTGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTg                                                                                                                   <  2:462231/141‑1 (MQ=255)
                         gTTTTACCACTACCTGTTGGCCCAATTAATGCAATGTTACTTTTTTGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGa                                                                                                                  >  1:19644/1‑141 (MQ=255)
                          ttttACCACTACCTGTTGGCCCAATTAATGCTATGTTACTTTTTTGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGAc                                                                                                                 <  1:324513/141‑1 (MQ=255)
                             tACCACTACCTGTTGGCCCAATTAATGCAATGTTACTTTTTTGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCaa                                                                                                              >  2:619632/1‑141 (MQ=255)
                              aCCACTACCTGTTGGCCCAATTAATGCAATGTTACTTTTTTGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAAt                                                                                                             >  1:50521/1‑141 (MQ=255)
                                  cTACCTGTTGGCCCAATTAATGCAATGTTACTTTTTTGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACa                                                                                                         >  1:791354/1‑141 (MQ=255)
                                     ccTGTTGGCCCAATTAATGCAATGTTACTTTTTTGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACatat                                                                                                      <  1:204101/141‑1 (MQ=255)
                                       tGTTGGCCCAATTAATGCAATGTTACTTTTTTGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTAAAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTc                                                                                                    <  1:668344/141‑1 (MQ=255)
                                        gTTGGCCCAATTAATGCAATGTTACTTTTTTTTTTTTTTTTTTCATCTTAATTTGGTCTTCGTTGTTGAATACGCTTATAGGGGGTATAAACAGCTACCGCCCAAGCTTCTTCAGCTTTTTCTTGACCAATAACATATTCg                                                                                                   >  2:678276/1‑141 (MQ=255)
                                        gTTGGCCCAATTAATGCAATGTTACTTTTTTTTAATTTTTCAAAATATACTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGTTACAGCTAAAGATTATCTCACTTTTTCTTGAACAAttatctctgcg                                                                                                   >  2:28686/1‑131 (MQ=255)
                                            gCCCAATTAATGCAATGTTACTTTTTTGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTa                                                                                               >  1:896457/1‑141 (MQ=255)
                                              ccAATTAATGCAATGTTACTTTTTTGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTaaa                                                                                             <  2:649918/141‑1 (MQ=255)
                                               cAATTAATGCAATGTTACTTTTTTGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAAt                                                                                            <  2:885740/141‑1 (MQ=255)
                                                  ttAATGCAATGTTACTTTTTTGTAATTCAACGTCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTAAAGCTAAAGATTTTTTAGATTTTTGTTGACCAATAACATATTCGTTTAAATGAt                                                                                         >  2:1090182/1‑141 (MQ=255)
                                                    aaTGCAATGTTACTTTTTTGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATcc                                                                                       <  1:889438/141‑1 (MQ=255)
                                                    aaTGCAATGTTACTTTTTTGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATcc                                                                                       <  2:1178660/141‑1 (MQ=255)
                                                     aTGCAATGTTACTTTTTTGTAATTCAGCATCATCTTCTTTTGGTTCTATTTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCa                                                                                      <  2:484134/141‑1 (MQ=255)
                                                     aTGCAATGTTACTTTTTTGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCa                                                                                      <  1:1126986/141‑1 (MQ=255)
                                                     aTGCAATGTTACTTTTTTGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCa                                                                                      <  2:905809/141‑1 (MQ=255)
                                                      tGCAATGTTACTTTTTTGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCAt                                                                                     >  1:856583/1‑141 (MQ=255)
                                                       gCAATGTTACTTTTTTGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATACACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGTCCAATACGATATTCGTTTAAATGATCCAtt                                                                                    >  2:305614/1‑140 (MQ=255)
                                                       gCAATGTTACTTTTTTGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATa                                                                                    <  2:896457/141‑1 (MQ=255)
                                                       gCAATGTTACTTTTTTGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATa                                                                                    <  1:1193979/141‑1 (MQ=255)
                                                        cAATGTTCCTTTTTTGTAATTGAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTCAAGATTTTTAAGCCTTTTCTTAACTAATCAAATATTCGTTTAAATGATCCATat                                                                                   >  2:822792/1‑140 (MQ=255)
                                                        cAATGTTACTTTTTTTTTATTTTTCAACATCATCATTTGGCCCTAATTATTGAATACGCTTATAGTGGCTATAAACAGCTCCAGCTAAAGCTCATTTAGCTCTCTCTTGACCAATAACATATTCGTTTAAATGATCCaaca                                                                                   >  2:1032679/1‑138 (MQ=255)
                                                        cAATGTTACTTTTTTGTAATTCAACATCATCTTCTTTTGGTCCTAATTGCTGAATACGCTTATAGTGGTTATAAACAGCTCCAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAGATGATCCATaa                                                                                   <  1:298782/141‑1 (MQ=255)
                                                         aaTGTTACTTTTTTGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAAt                                                                                  >  1:93664/1‑141 (MQ=255)
                                                          aTGTTACTTTTTTGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATCTTCGTTTAAATGATCCATAAtt                                                                                 <  2:875813/141‑1 (MQ=255)
                                                             ttACTTTTTTGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAAttcat                                                                              >  2:83437/1‑138 (MQ=255)
                                                              tACTTTTTTGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTCAATGATGCATAATTTCtt                                                                             >  2:1042432/1‑141 (MQ=255)
                                                                  tttttGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGTCCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAgg                                                                         >  2:652141/1‑141 (MQ=255)
                                                                    tttGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAg                                                                       <  1:903291/141‑1 (MQ=255)
                                                                    tttGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAg                                                                       <  1:621166/141‑1 (MQ=255)
                                                                    tttGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAg                                                                       <  1:619632/141‑1 (MQ=255)
                                                                    tttGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAg                                                                       <  2:919115/141‑1 (MQ=255)
                                                                      tGTAATTAAACCTCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTCGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTa                                                                     <  2:362316/141‑1 (MQ=255)
                                                                       gTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTAg                                                                    <  1:660636/141‑1 (MQ=255)
                                                                          tttttttatcatcTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTAGGTa                                                                 >  2:747990/8‑141 (MQ=255)
                                                                          aTTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTAGGTa                                                                 >  1:1101954/1‑141 (MQ=255)
                                                                          aTTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGACTAGGTa                                                                 >  2:317645/1‑141 (MQ=255)
                                                                                  tcatcTTCTTTTTGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTAAAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTAGGTAATTCTGTc                                                         <  2:755733/141‑1 (MQ=255)
                                                                                  tcatcTTCTTTTCGTCCTAATTGTTGCATACGCTTATCGTGGTTATAAACCTCTTACGCTAATTATTGCTTATCTTTATCTTGGCTGATAACATATTCGTTTAAATGATCCATGATTTCTTTAGGAGTAGGTAATTCTGTc                                                         <  2:694281/141‑1 (MQ=255)
                                                                                     tcttctTTTGGTCCTAATTGTTGAATACGCTTTTAGTGGTTATTTACTGCTACAGCTTAAGATTTTTTAGCTTTTTCTTGACCAATAGCATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTAGGTAATTCTGTCATc                                                      <  1:327197/141‑1 (MQ=255)
                                                                                      cttcttTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTAGGTAATTCTGTCATcc                                                     >  2:381215/1‑140 (MQ=255)
                                                                                      cttcttTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTAGGTAATTCTGTCATCg                                                     >  2:952728/1‑141 (MQ=255)
                                                                                        tcttTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTAGGTAATTCTGTCATCGCt                                                   >  2:208245/1‑141 (MQ=255)
                                                                                            ttGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTAGGTAATTCTGTCATCGCTTCAg                                               <  1:1075685/141‑1 (MQ=255)
                                                                                              ggTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAACTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTAGGTAATTCTGTCATCGCTTCAGaa                                             <  1:923945/141‑1 (MQ=255)
                                                                                                   tAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTAGGTACTTCTGTCATCGCTTCAGAAGTGtt                                        >  1:988317/1‑141 (MQ=255)
                                                                                                   tAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTAGGTAATTCTGTCATCGCTTCAGAATTGtt                                        >  1:148127/1‑141 (MQ=255)
                                                                                                        gttgAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTAGGTAATTCTGTCATCGCTTCCGAAGTGTTTTGAg                                   >  2:1005474/1‑141 (MQ=255)
                                                                                                        gttgAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTAGGTAATTCTGTCATCGCTTCAGAAGTGTTTTGAg                                   >  2:1173627/1‑141 (MQ=255)
                                                                                                         ttgAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTAGGTAATTCTGTCATCGCTTCAGAAGTGTTTTGAGc                                  >  2:169428/1‑141 (MQ=255)
                                                                                                          tgAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCAATTATTTCATTAGGAGTAGGTAATTCTGTCATCGCTTCAGAAGTGTTTTGAGCt                                 >  2:67079/1‑141 (MQ=255)
                                                                                                           gAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTAGGTAATTCTGTCATCGCTTCAGAAGTGTTTTGAGCTa                                >  2:931803/1‑141 (MQ=255)
                                                                                                           gAATACGCTTATAGTGGTTATAAACAGCTAAAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTAGGTAATTCTGTCATCGCTTCAGAAGTGTTTTGAGCTa                                >  1:379814/1‑141 (MQ=255)
                                                                                                             aTACGCTTATAGGGGTTATAAACAGCTCCATCTAAAGTGTTTTTAGCTTTTTCTGGACCAATAACATATTCGTTTAAATGGTCCATAATTTCTTTAGGAGTAGGTAATTCTGTCATCGCTTCAGAAGTGTTTTGAGCTAAt                              <  1:678276/141‑1 (MQ=255)
                                                                                                              aaCGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTAGGTAATTCTGTCATCGCTTCAGAAGTGTTTTGAGCTAAtt                             <  1:160367/140‑1 (MQ=255)
                                                                                                                  cTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTAGGTAATTCTGTCATCGCTTCAGGCGTGTTTTGAGCTAAttcttt                         >  2:319525/1‑140 (MQ=255)
                                                                                                                  cTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTAGGTAATTCTGTCATCGCTTCAGAAGTGTTTTGAGCTAAttcttc                         >  2:132688/1‑141 (MQ=255)
                                                                                                                    tataGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTAGGTAATTCTGTCATCGCTTCAGAAGTGTTTTGAGCTAAttcttctt                       >  1:256400/1‑141 (MQ=255)
                                                                                                                    tataGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTAGGTAATTCTGTCATCGCTTCAGAAGTGTTTTGAGCTAAttcttctt                       <  2:1005291/141‑1 (MQ=255)
                                                                                                                     ataGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTACATGATACATAATTTCTTTAGGAGAAGCTAATTCTGTCATCGCTTCAGAAGTTTTTTAAGCCActtcttctta                      >  2:102180/1‑140 (MQ=255)
                                                                                                                     ataGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTAGGTAATTCTGTCATCGCTTCAGAAGTGTTTTGAGCCAAttcttcttc                      >  2:1008346/1‑141 (MQ=255)
                                                                                                                      tggTGGTTATAAAAAGGTAAAGCTACAGATTTTTTAGCTTTTTCTTGACCGATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTAGGTAATTCTGTCATCGCTTCAGAAGTGTTTTGAGCTAATTCTTCTTcg                     <  2:822773/139‑1 (MQ=255)
                                                                                                                       aGTTGTTTTAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATGCGTTTAAATGATCCATAATGTCTTTAGGAGTAGGTAATTCTGTCATCGCTTCAGAAGTGTTTTGAGCTAATTCTTCTTcga                    <  2:1076455/141‑1 (MQ=255)
                                                                                                                       aGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTAGGTAATTCTGTCATCGCTTCAGAAGTGTTTTGAGCTAATTCTTCTTcga                    <  1:1078180/141‑1 (MQ=255)
                                                                                                                        gTGGTTATAAACAGCTACAGCTAAAGATTTTTTCGCTTTTTCTTGACCAATAATACATTCTTTTAAATGATCCATAATTTCTTTAGGAGTAGGTAAGTCTGTCATCGCTTCAGAAGTGTTTTGAGCTAATTCTTCTTcgac                   <  2:657036/141‑1 (MQ=255)
                                                                                                                        gTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTAGGTAATTCTGTCATCGCTTCAGAAGTGTTTTGAGCTAATTCTTCTTcgac                   <  1:328642/141‑1 (MQ=255)
                                                                                                                        gTGGGTATAAACAGCTAAAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTAGGTAATTCTGTCATCGCTTCAGAAGTGTTTTGAGCTAATTCTTCTTcgac                   <  1:969075/141‑1 (MQ=255)
                                                                                                                         gggTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTAGGTAATTCTGTCATGGCTTTTGAAGGTGTGGGAGCTAATTCTTCTTcgacg                  <  1:577299/140‑1 (MQ=255)
                                                                                                                          ggTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTAGGTAATTCTGTCATCGCTTCAGAAGTGTTTTGAGCTAATTCTTCTTcgacga                 <  1:658741/141‑1 (MQ=255)
                                                                                                                          ggTTATAAACAGCTAAAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTAGGTAATTCTGTCATCGCTTCAGAAGTGTTTTGAGCTAATTCTTCTTcgacga                 >  1:230529/1‑141 (MQ=255)
                                                                                                                           gTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTAGGTAATTCTGTCATCGCTTCAGAAGTGTTTTGAGCTAATTCTTCTTCGACGAt                <  1:104190/141‑1 (MQ=255)
                                                                                                                             tataAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATACTTTCTTCTGGCCAATTGAAGTCGAACAGCGCTCCTGAAGTGTTTTGAGCTAATTCTTCTTCGACGAtgt              >  2:543320/1‑139 (MQ=255)
                                                                                                                                aaaCAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTAGGTAATTCTGTCATCGCTTCAGAAGTGTTTTGAGCTAATTCTTCTTCGACGATTTCTg           <  1:768995/141‑1 (MQ=255)
                                                                                                                                aaaCAGCTAAAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTAGGTAATTCTGTCATCGCTTCTGAAGTGTCTTGAGCTAATTCTTCTTCGACGATTCCTg           >  2:484114/1‑141 (MQ=255)
                                                                                                                                aaaCAGCTAAAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTAGGTAATTCTGTCATCGCTTCAGAAGTGTTTTGAGCTAATTCTTCTTCGACGAtttgtt           >  2:484419/1‑138 (MQ=255)
                                                                                                                                  acagctacagctAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTAGGTAATTCTGTCATCGCTTCAGAAGTGTTTTGAGCTAATTCTTCTTCGACGATTTCTGAg         >  1:419632/1‑141 (MQ=255)
                                                                                                                                   cagctacagctaAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTAGGTAATTCTGTCATCGCTTCAGAAGTGTTTTGAGCTAATTCTTCTTCGACGATTTCTGAGc        <  2:1069460/141‑1 (MQ=255)
                                                                                                                                    agctacagctaAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTAGTTACTTATGTCATCGCTTCAGAAGGGTTTAGGGCTACTTCTTCTTCGGCGATTTCtaccca       >  2:1159534/1‑136 (MQ=255)
                                                                                                                                        acagctaAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTAGGTAATTCTGTCATCGCTTCAGAAGTGTTTTGAGCTAATTCTTCTTCGACGATTTCTGAGCATAAt   <  1:228012/141‑1 (MQ=255)
                                                                                                                                         cagctaAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTAGGTAATTCTGTCATCGCTTCATAAGTGTTTTGAGCTAATTCTTCTTCGACGATTTCTGAGCATAAtt  >  2:508728/1‑141 (MQ=255)
                                                                                                                                         |                                                                                                                                            
CTTGGCTAAGGTTTGAGCTAATAATGTTTTACCACTACCTGTTGGCCCAATTAATGCAATGTTACTTTTTTGTAATTCAACATCATCTTCTTTTGGTCCTAATTGTTGAATACGCTTATAGTGGTTATAAACAGCTACAGCTAAAGATTTTTTAGCTTTTTCTTGACCAATAACATATTCGTTTAAATGATCCATAATTTCTTTAGGAGTAGGTAATTCTGTCATCGCTTCAGAAGTGTTTTGAGCTAATTCTTCTTCGACGATTTCTGAGCATAATT  >  CP000730/1776128‑1776405

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: