| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | CP000730 | 1,747,374 | Δ3 bp | 100% | coding (2073‑2075/2280 nt) | secDF ← | RND superfamily resistance‑nodulation‑cell division protein:proton (H+) antiporter |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP000730 | 1747374 | 1747376 | 3 | 37 [0] | [1] 38 | secDF | RND superfamily resistance‑nodulation‑cell division protein:proton (H+) antiporter |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 1747377 = | 0 (0.000) | 37 (0.860) | 30/242 | NT | 100% | coding (2072/2280 nt) | secDF | RND superfamily resistance‑nodulation‑cell division protein:proton (H+) antiporter |
| ? | CP000730 | = 1747373 | 0 (0.000) | coding (2076/2280 nt) | secDF | RND superfamily resistance‑nodulation‑cell division protein:proton (H+) antiporter | |||||
GTTTTTTCATTATTCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAACTACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCTGTTGTCGTAATCACTTTAACC > CP000730/1747249‑1747484 | gTTTTTTCATTATTCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataact < 1:531710‑M2/140‑16 (MQ=255) ttttttTATTATTTTCCATAGCGGAACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATACTGCTAAAGTAAAGTTGAATATCGTAGGAGCCTCGAAGAATAGTATAGCAcctactaccataactg < 2:190232‑M2/140‑17 (MQ=255) tttttCATTATTCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGATCACCGAAGAATAGTATAGCAactactacaataactgt > 2:94164‑M2/1‑123 (MQ=255) ttttCATTTTTCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgtt > 2:439595‑M2/1‑122 (MQ=255) ttCATTTTTCCCCTTAGTTGAACGACAATGAAGATTGAATATATTACACAAGAAATAAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaa > 1:56190‑M2/1‑120 (MQ=255) ttattattccCCATAGCGGAACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaat > 2:296075‑M2/3‑119 (MQ=255) tCCTTATTCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaat > 2:458067‑M2/1‑119 (MQ=255) tCATTATTCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAATGCACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTAAAGCAactactacaataactgtcaat < 2:294701‑M2/140‑22 (MQ=255) cATTATTCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaata < 2:157407‑M2/140‑23 (MQ=255) attcttCCCCAGAGCTGAACGGCAATGAAGATTTAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGAAGCACCGAAGAATAGTATAGCAactactacaataactgttaatac > 2:446656‑M2/1‑117 (MQ=255) ttattCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatact < 1:236198‑M2/140‑25 (MQ=255) ttCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgta > 2:158501‑M2/1‑113 (MQ=255) tAGCGGAACGGCAATGAAGATTGAAGAGAATACACCAGAGATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattg > 2:280459‑M2/1‑106 (MQ=255) ggAACGGCAATGAAGATTGCAATGACTGCTCCAAAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacg < 1:404809‑M2/140‑39 (MQ=255) ggAACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacg < 1:518785‑M2/140‑39 (MQ=255) tgcAATGAAGATTTAAGAGAATAAACTAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtca > 1:324794‑M2/2‑97 (MQ=255) ggCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtca > 2:455652‑M2/1‑97 (MQ=255) gCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtagtaattgaacgggtcat < 2:295007‑M2/140‑45 (MQ=255) agagAATACACCAGAAATCAATCCGGTAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCAAAGAATAGTATAGAAactactacaataactattaatactgtattaattgaacgtttcattgtctgtcaaattg < 1:421792‑M2/140‑59 (MQ=255) tACACCAGAAATCAATCAGATAAATAATGCTAAAATAAAGTAAAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctaattgatctat > 1:101276‑M2/1‑76 (MQ=255) acacCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtataattgatctatt < 2:343074‑M2/140‑66 (MQ=255) acaaaagaaatCAATCCGATAAATAATGCTAAAGTAAAGTCGAATCTCGTAGGAGCACCGCAGAATAGTATAGCAactactccaataactgttaatactgtattaattaaaggtgtaatgggctgtatacttgatctatt < 2:509504‑M2/135‑66 (MQ=255) cacCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctaattgatctatta < 1:171456‑M2/140‑67 (MQ=255) aaaTCAATCCGATAAATAATGCTAAAGTAAAGTGGAATATCGTAGGGGCACGGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctaattgaaatattagcgtaa < 2:179080‑M2/140‑73 (MQ=255) atcCGATAAAAAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaatacctgttaacattgtattaattgaacgtgtcattgtctgtctaattgatctattaacgatatcatca > 2:153214‑M2/1‑62 (MQ=255) tGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctaattgatctattaacgatatcatcaatttgttctgttg < 1:431287‑M2/140‑92 (MQ=255) gCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctaattgatctattaacgatatcatcaatttgttctgttgt > 2:236198‑M2/1‑48 (MQ=255) aggaaagtTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctaattgatctattaacgatatcatcaatttgttctgttgtcgtaa > 1:374786‑M2/1‑43 (MQ=255) aagtTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctaattgatctattaacgatatcatcactttgttctgttttcgtaatcac < 2:205024‑M2/140‑102 (MQ=255) aagtTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctaattgatctattaacgatataatcaatttgttctgttgtcgtaatcac < 2:530633‑M2/140‑102 (MQ=255) aagtTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtacaattgatcgattaacgatatcatcaatttgttctgttgtcgtaatcac > 2:2773‑M2/1‑39 (MQ=255) atttgaATATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctaattgatctattaccgctatcatcaatttgttgtgtgggcgtaatcact > 2:335108‑M2/3‑38 (MQ=255) atttgaATATCGAAGGTGAACCTATGTATGTTATGGCAactactacaatatctgttaatactgtattaattgaatgtgtcattgtctgtctaattgatctattaactatatcatcaatttgttctgttgtcgtaatcact > 2:131880‑M2/3‑38 (MQ=255) aaTATCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctaattgatctattaacgatatcatcacattggcttgttattgtaatcaccttacc < 1:99146‑M2/140‑108 (MQ=255) atCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctaattgatctattaacgatatcatcaatttgttctgttgtcgtaatcactttaacctt > 2:293677‑M2/1‑30 (MQ=255) atCGTAGGAGCACCGAAGAATAGTATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctaattgatctattaacgatatcatcaatttgttctgttgtcgtaatcactttaacctt > 2:536129‑M2/1‑30 (MQ=255) tCGTAGGTGCACCGAAGAATAGGATAGCAactactacaataactgttaatactgtattaattgaacgtgtcattgtctgtctaattgatctattaaccatagcatcaatttgttctgttgtcgtaatcactttaaccttt > 2:2742‑M2/1‑29 (MQ=255) | GTTTTTTCATTATTCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAACTACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCTGTTGTCGTAATCACTTTAACC > CP000730/1747249‑1747484 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |