Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP000730396,5400GA59.1% 54.5 / 91.7 89A208T (GCA→ACA) USA300HOU_0364possible lipoprotein
Reads supporting (aligned to +/- strand):  ref base G (19/17);  new base A (29/23);  total (49/40)
Fisher's exact test for biased strand distribution p-value = 8.30e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.32e-01
Rejected as consensus: Frequency below/above cutoff threshold.

AAGCTGATACATTAGATATCATACCAAAATTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCGCACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAATTATTGGATAAATATAAAGATAACAACGGCGGTTATGAGTCATTT  >  CP000730/396394‑396680
                                                                                                                                                  |                                                                                                                                            
aaGCTGATACATTAGATATCATACCAAAATTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCGca                                                                                                                                            <  2:180893/149‑1 (MQ=255)
         taTTAGATCACATACGCAACTTTAGGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTGGGCGGCGCACAAAAAAtt                                                                                                                                   <  2:405591/148‑1 (MQ=255)
         cATTAGACATCATACCAAAATTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCGCACAAAAAAtt                                                                                                                                   <  2:456123/149‑1 (MQ=255)
          aTTAGATATCATACCAAAATTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCGCACAAAAAAttt                                                                                                                                  <  2:159420/149‑1 (MQ=255)
                tatCATACCAAAATTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCGCACAAAAAATTTATGACt                                                                                                                            <  2:224256/149‑1 (MQ=255)
                    aTACCAAAATTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATAGAGATTTATATGATTTTAAAGCGAACGTTGAAGGAACACAACAAAtatg                                                                                                                                 >  1:208138/1‑137 (MQ=255)
                    aTACCAAAATTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCGCACAAAAAATTTATGACTTAtt                                                                                                                        >  2:171006/1‑149 (MQ=255)
                       ccAAAATTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAACAATTTATGa                                                                                                                              >  1:548544/1‑140 (MQ=255)
                       ccAAAATTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATGTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGa                                                                                                                              >  1:657399/1‑140 (MQ=255)
                        cAAAATTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTCGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCGCACAAAAAATTTATGACTTATTTaaa                                                                                                                    <  2:552749/149‑1 (MQ=255)
                         aaaaTTAATGTTACAAGGTTCTGTTGATCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAAGTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACt                                                                                                                            <  1:702115/140‑1 (MQ=255)
                         aaaaTTAATGCTACAAGGTTCTGTTGACCTATTAAATGGAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACt                                                                                                                            <  1:50299/140‑1 (MQ=255)
                           aaTTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTa                                                                                                                          >  1:934992/1‑140 (MQ=255)
                                 tgtgaaaaGGTTCTGTTGACCTATTAAATGGAGTTGCAACTTTTAAAATCACAGGTGAAGAAGAAATTTATTCACATAACGGTTAATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTaaa                                                                                                                    <  1:438914/134‑1 (MQ=255)
                                 tGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTaaa                                                                                                                    <  1:319573/140‑1 (MQ=255)
                                 tGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTaaa                                                                                                                    <  1:781178/140‑1 (MQ=255)
                                  gTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAAc                                                                                                                   <  1:548727/140‑1 (MQ=255)
                                  gTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAAc                                                                                                                   >  1:323374/1‑140 (MQ=255)
                                      cAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACCAAAAATTTATGACTTATTTAAACCTAt                                                                                                               >  1:701918/1‑140 (MQ=255)
                                       aaGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCGCACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGaaa                                                                                                     >  2:22583/1‑149 (MQ=255)
                                           ttCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAAAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCGCACAAAAAATTTATGACTTATTTAAACCTATTTTAGaaaaaaaaa                                                                                                 >  2:77299/1‑148 (MQ=255)
                                              tGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATACACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTAAGACTTATTTAAACCTATTTTAgaga                                                                                                       >  1:619387/1‑140 (MQ=255)
                                               gTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGaa                                                                                                      >  1:971862/1‑140 (MQ=255)
                                               gTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACAGACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGaa                                                                                                      >  1:1604/1‑140 (MQ=255)
                                                ttGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCGCACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATaaa                                                                                            >  2:458065/1‑149 (MQ=255)
                                                ttGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCGCACAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAgcaacca                                                                                           >  2:147297/1‑143 (MQ=255)
                                                  gACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCGCACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATaaaaa                                                                                          <  2:385783/149‑1 (MQ=255)
                                                  gACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGaaaaa                                                                                                   >  1:950533/1‑140 (MQ=255)
                                                   aCCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCGCACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATaaaaaa                                                                                         >  2:561557/1‑149 (MQ=255)
                                                   aCCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGaaaaaa                                                                                                  >  1:914422/1‑140 (MQ=255)
                                                   aCCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATCTACATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATCTATGAATTATTTAAACCTCTTTTACAGaaacaa                                                                                                  >  1:180001/1‑140 (MQ=255)
                                                          ataTGAAGTTGCAACTTCTAAAATCACAGTTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCGCACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGtg                                                                                  <  2:517851/147‑1 (MQ=255)
                                                            aTGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCGCACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAAATAAGtgat                                                                                >  2:524719/1‑149 (MQ=255)
                                                                 gTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAg                                                                                    >  1:587501/1‑140 (MQ=255)
                                                                 gTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAg                                                                                    <  1:407580/140‑1 (MQ=255)
                                                                    tcAACTTCTAAAAACACAGGTGAAGAATAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCGCACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCa                                                                        <  2:105850/148‑1 (MQ=255)
                                                                    gCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGtga                                                                                 >  1:47983/1‑140 (MQ=255)
                                                                      aaCTTCTAAAATCACAGGTGAAGAATAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGtgatg                                                                               <  1:90413/140‑1 (MQ=255)
                                                                      aaCTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGtgatg                                                                               <  1:368481/140‑1 (MQ=255)
                                                                      aaCTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATAAAGATTTATATGATTTTAAAGCGAACGTAGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGtgatg                                                                               <  1:834214/140‑1 (MQ=255)
                                                                       aCTTCTAAAATCACAGGTGCCGAAGAAATTTATTCACATACAGATTTATATGATATTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAAGCTATTTTAGAGAAAAAAGATAAAAAATTAAGtgatga                                                                              >  1:655964/1‑140 (MQ=255)
                                                                       aCTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCGCACAAAAAATTTATGACTTATTTAAACATATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAAt                                                                     >  2:207981/1‑149 (MQ=255)
                                                                          tcaaaaaACACACGTGAAGAAGAAACATATTCACATACAGATTTATATGATGGTAAAGCGATCGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGatat                                                                           <  1:708202/137‑1 (MQ=255)
                                                                             aaaaTCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCGCACACAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAAAtt                                                               >  2:508993/1‑149 (MQ=255)
                                                                                 tCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCGCACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGAt                                                           <  2:591441/149‑1 (MQ=255)
                                                                                 tCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCGCACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTAATGATATCCACATGAACTTCGaa                                                           >  2:138367/1‑148 (MQ=255)
                                                                                   acaGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCGCACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATACAACCGTAAGTGATGATATCCAAATGAACTTCGATaa                                                         <  2:128811/149‑1 (MQ=255)
                                                                                     aGGTGAAGAAGAAATTTATTCACATACAGATTTATCTGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACt                                                                <  1:560270/140‑1 (MQ=255)
                                                                                     aGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACt                                                                <  1:151127/140‑1 (MQ=255)
                                                                                      ggTGAAGAAGAAGTTTATTCATATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGGAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACtt                                                               >  1:524001/1‑140 (MQ=255)
                                                                                      ggTGAAGAAGAAATTTATTCACATACAGATTTATATGGTTTTAAATCGAACGTTGAAGGCGCACAAAAAATTTATGACTTATTTAAACCTCTTTTAGAGAAAAAAGATAAGAAATTAAGTGATGTTATCCAAATGAACTTCGATAAAGt                                                      >  2:447398/1‑149 (MQ=255)
                                                                                       gTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTc                                                              <  1:153574/140‑1 (MQ=255)
                                                                                          aagaagaaATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGAt                                                           <  1:867768/140‑1 (MQ=255)
                                                                                          aagaagaaATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAACATAAAAAATTAAGGGATGATATCCAAATGAACTTCGAt                                                           <  1:647690/140‑1 (MQ=255)
                                                                                             aagaaATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCGCACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCaa                                               <  2:84075/149‑1 (MQ=255)
                                                                                             aagaaATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCGCACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCaa                                               <  2:436408/149‑1 (MQ=255)
                                                                                                aaaTTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCGCACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCCatta                                            >  2:600551/1‑149 (MQ=255)
                                                                                                aaaTTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCGCACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAattt                                            >  2:556095/1‑148 (MQ=255)
                                                                                                   tttATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCGCACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAATTATTg                                         >  2:25017/1‑149 (MQ=255)
                                                                                                     tATTCACATACAGAGTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCa                                                >  1:527284/1‑140 (MQ=255)
                                                                                                        tCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATCAAGTGAATCAatt                                             >  1:543463/1‑140 (MQ=255)
                                                                                                        tCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGCATCAatt                                             >  1:543326/1‑140 (MQ=255)
                                                                                                        tCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAAtagatt                                             >  1:179711/1‑135 (MQ=255)
                                                                                                         cacaTACAGGTTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAatta                                            <  1:855217/140‑1 (MQ=255)
                                                                                                          acaTACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAattat                                           <  1:449954/140‑1 (MQ=255)
                                                                                                           caTACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCGAACAAAAAATTTATGAATTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATTAAAATGAACTTCGATAAAGTGAATAAATTATTGGATAAata                                 >  2:62236/1‑149 (MQ=255)
                                                                                                            aTACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCGCACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAATTATTGGATAAatat                                <  2:140764/149‑1 (MQ=255)
                                                                                                             tACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAATTATTgg                                        <  1:636902/140‑1 (MQ=255)
                                                                                                             tACAGATGTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAATTATTgg                                        <  1:825849/140‑1 (MQ=255)
                                                                                                              aCAGATTTATATGATTTTAAAGCGAACGTTGAAGGAGCACAAAAAATTTATGACTTATTTAAACCTATGTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCAAAATGAACTTCGATAAAGTAAATCAAGTATTGGATAAATATaa                              >  2:45135/1‑149 (MQ=255)
                                                                                                                       tatGATTTTAAAGCGAACGTTGAAGGCGCAAAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAAGGAACCAATTATTGAAAAAATATAAAGCTaacaa                     >  2:305820/1‑149 (MQ=255)
                                                                                                                          gATTTTAAAGCGAACGTTGAAGGCGCACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATCAACTTCGATAAAGTGAATCAATTATTGGATAAATATAAAGATaacacagg                  >  2:408996/1‑145 (MQ=255)
                                                                                                                               tAAAGCGAACGTTGAAGGCGCACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAATTATTGGATAAATATAAAGATAACAACGGCGGtt             <  2:174847/149‑1 (MQ=255)
                                                                                                                               aaaaGCCAACGTTGAAGGCGCACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAATTATTGGATAAATATAAAGATAACAACGGCGGtt             <  2:181925/148‑1 (MQ=255)
                                                                                                                                 aaGCGAACGTTGAAGGCCAACAACAAAATTATGACTTATTTAAACCTAATTTAAAGAAAGAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGAAAAAGTGAATCAATTATTGGAGAAATGTAAAGAGaacaac                    >  1:212365/1‑140 (MQ=255)
                                                                                                                                 aaGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAATTATTGGATAAATATAAAGATaacaac                    <  1:860489/140‑1 (MQ=255)
                                                                                                                                   gCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGGAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAATTATTGAATAAATATAAAGATAACAAcgg                  >  1:672664/1‑140 (MQ=255)
                                                                                                                                    cGAACGTTGAAGGCGCACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAATTATTGGATAAATATAAAGATAACAACGGCGGTTATGAg        >  2:426968/1‑149 (MQ=255)
                                                                                                                                     gAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAATTATTGGATAAATATAAAGATAACAAcggcg                >  1:132585/1‑140 (MQ=255)
                                                                                                                                     gAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAATTATTGGATAAATATAAAGATAACAAcggcg                >  1:244335/1‑140 (MQ=255)
                                                                                                                                     gAACGTTAAACGCAAACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAATTATTGGATAAATATAAAGATAACAAcggcg                <  1:857485/140‑1 (MQ=255)
                                                                                                                                      aaCGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAATTATTGGATAAATATAAAGATAACAAcggcgg               >  1:490928/1‑140 (MQ=255)
                                                                                                                                         gTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAATTATTGGATAAATATAAAGATAACAACGGCGGTTa            >  1:422226/1‑140 (MQ=255)
                                                                                                                                          ttGAAGGCGCACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAATTATTGGATAAATATAAAGATAACAACGGCGGTTATGAGTCAttt  <  2:2328/149‑1 (MQ=255)
                                                                                                                                          ttGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAATTATTGGATAAATATAAAGATAATAACGGCGGTTAt           >  1:353159/1‑140 (MQ=255)
                                                                                                                                          ttGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAATTATTGGATAAATATAAAGATAACAACGGCGGTTAt           >  1:928409/1‑140 (MQ=255)
                                                                                                                                          ttGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTGAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAATTGAATCAATTATTGGATAAATATAAAGATAACAACGGCGGTTAt           >  1:87048/1‑140 (MQ=255)
                                                                                                                                           tGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAGAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAATTATTGGATAAATATAAAGATAACAACGGCGGTTATg          >  1:667656/1‑140 (MQ=255)
                                                                                                                                              aGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAATTATTGGATAAATATAAAGATAACAACGGCGGTTATGAGt       <  1:598629/140‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                            
AAGCTGATACATTAGATATCATACCAAAATTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCGCACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAATTATTGGATAAATATAAAGATAACAACGGCGGTTATGAGTCATTT  >  CP000730/396394‑396680

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: