Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	933,033	0	T	C	61.2%	54.7 / 57.7	67	intergenic (‑74/‑27)	nifU/USA300HOU_0898	possible NifU family protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (14/12);  new base C (16/25);  total (30/37)
Fisher's exact test for biased strand distribution p-value = 3.14e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.96e-01
Rejected as consensus: Frequency below/above cutoff threshold.

CGTAATAAAAATGGACGAAGACGTTCAATAACTTCTGCTACTTGATCAAACATCGTTGTATCTTCAGTAGGCATCAGGCAAGTCTCCTTTCGAGAGATGAATTTGATAATCTTTATTAGTATATTATAATAGATAGTGTAATAAAAATCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAGATGTTATATGTGCAAGTTGCGTTAATGCGCCAACATCGAAAGATATTTATGACTGGCTACAGCCGCTATTAAAAAGAAAATACCC  >  CP000730/932886‑933178                                                                                                                                                    |                                                                                                                                                  cGTAATAAAAATGGACGAAGACGTTCAATAACTTCTGCTACTTGATCAAACATCGTTGTATCTTCAGTAGGCATCAGGCAAGTCTCCTTTCGAGAGATGAATTTGATAATCTTTATTAGTATATTATAATAGATAGTGTAATTAAAATc                                                                                                                                                  >  2:488424/1‑149 (MQ=255) cGTAATAAAAATGGACGAAGACGTTCAATAACTTCTGCTACTTGATCAAACATCGTTGTATCTTCAGTAGGCATCAGGCAAGTCTCCTTTCGAGAGATGAATTTGATAATCTTTATTAGTATATTATAATAGATAGTGTAATAAAAATc                                                                                                                                                  >  2:108078/1‑149 (MQ=255)              gACGAAGACGTTCAATAACTTCTGCTACTTGATCAAACATCGTTGTATCTTCAGTAGGCATCAGGCAAGTCTCCTTTCGAGAGATGAATTTGATAATCTTTATTAGTATATTATAATAGATAGTGTAATAAAAATCTATCAAACCAATg                                                                                                                                     >  2:43391/1‑149 (MQ=255)                    gACGTTCAATAACTTCTGCTACTTGATCAAACATCGTTGTATCTTCAGTAGGCATCAGGCAAGTCTCCTTTCGAGAGATGAATTTGATAATCTTTATTAGTATATTATAATAGATAGTGTAATAAAAATCTATCAAACCAATGGGGGAt                                                                                                                               <  2:181531/149‑1 (MQ=255)                                cTTCTGCTACTTGATCAAACATCGTAGTATCTTCAGTAGGCATCAGGCAAGTCTCCTTTCGAGAGATGAATTTGATAATCTTTATTAGTATATTATAATAGATAGTGTAATAAAAACCTATCAAACCAATGGGGGATaaa                                                                                                                            <  1:610193/140‑1 (MQ=255)                                   cTGATACTTGATCAAAAATCGTTGTATCTGCAGTAGGAATCAGGCAAGTCTCCGTACGAGAGATGAATTTGATAATCTTTATTAGTATATTATAATAGATAGTGTAATAAAAACCTATCAAACCAATGGGGGATAAatat                                                                                                                         <  1:20685/140‑1 (MQ=255)                                   atGCTACTTGATCAAACATCGTTGTATCTTCAGTAGGCATCAGGCAAGTCTCCTTTCGAGAGATGAATTTGATAATCTTTATTAGTATATTATAATAGATAGTGTAATAAAAACCTATCAAACCAATGGGGGATAAatat                                                                                                                         <  1:72134/139‑1 (MQ=255)                                           tGATCAAACATCGTTGTATCTTCAGTAGGCATCAGGCAAGTCTCCTTTCGAGAGATGAATTTGATAATCTTTATTAGTATATTATAATAGATAGTGTAATAAAAATCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAgtgt                                                                                                        >  2:528561/1‑149 (MQ=255)                                           tGATCAAACATCGTTGTATCTTCAGTAGGCATCAGGCAAGTCTCCTTTCGAGAGATGAATTTGATAATCTTTATTAGTATATTATAATAGATAGTGTAATAAAAACCTATCAAACCAATGGGGGATAAATATATGGAGCa                                                                                                                 >  1:30537/1‑140 (MQ=255)                                                 aaCATCGTTGTATCTTCAGTAGGCATCAGGCAAGTCTCCTTTCGAGAGATGAATTTGATAATCTTTATTAGTATATTATAATAGATAGTGTAATAAAAATCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGt                                                                                                  >  2:427176/1‑149 (MQ=255)                                                  aCATCGTTGTATCTTCAGTAGGCATCAGGCAAGTCTCCTTTCGAGAGATGAATTTGATAATCTTTATTAGTATATTATAATAGATAGTGTAATAAAAACCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAgt                                                                                                          <  1:4313/140‑1 (MQ=255)                                                             tCTTCAGTAGGCATCAGGCAAGTCTCCTTTCGAGAGATGAATTTGATAATCTTTATTAGTATATTATAATAGATAGTGTAATAAAAATCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAGa                                                                                      <  2:240981/149‑1 (MQ=255)                                                              cTTCAGGAGGCATCAGGCAATGCTCCTTTCGAGAGATGAATTTGATAATCTTTATTAGTATATTATAATAGATAGTGTAATAAAAATCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAGAt                                                                                     <  2:531009/149‑1 (MQ=255)                                                                 cAGTAGGCATCAGGCAAGTCTCCTTTCGAGAGATGAATTTGATAATCTTTATTAGTATATTATAATAGATAGTGTAATAAAAATCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAGATGtt                                                                                  <  2:280077/149‑1 (MQ=255)                                                                  aGTAGGCATCAGGCAAGTCTCCTTTCGAGAGATGAATTTGATCATCTTTATTAGTATATTATAATAGATAGTGTAATAAAAACCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGTTTATgggg                                                                                          <  1:78143/140‑1 (MQ=255)                                                                  aGTAGGCATCAGGCAAGTCTCCTTTCGAGAGATGAATTTGATAATCTTTATTAGTATATTATAATAGATAGTGTAATAAAAATCTATCAAACCAATGGGGGCTAAATATATGGAGCACGTGAGTGTGGTAGTTTTTGGGGCAGATGTta                                                                                 <  2:376432/149‑1 (MQ=255)                                                                     aGGCATCAGGCAAGTCTCCTTTCGAGAGATGAATTTGATAATCTTTATTAGTATATTATAATAGATAGTGTAATAAAAACCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAg                                                                                       <  1:589496/140‑1 (MQ=255)                                                                       gCATCAGGCAAGTCTCCTTTCGAGAGATGAATTTGATAATCTTTATTAGTATATTATAATAGATAGTGTAATAAAAATCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAGATGTTATAtgt                                                                            >  2:310009/1‑149 (MQ=255)                                                                        cATCAGGCAAGTCTCCTTTCGAGAGATGAATTTGATAATCTTTATTAGTATATTATAATAGATAGTGTAATAAAAATCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGTTCATGGGGCAGATGTTATAtgtg                                                                           >  2:36272/1‑149 (MQ=255)                                                                            aGGCAAGTCTCCTTTCGAGAGATGAATTTGATAATCTTTATTAGTATATTATAATAGATAGTGTAATAAAAACCTATCAAACCAATGGGGGATAAAGATATGGAGCACGTAAGAGTGGAAGTTTATGGGGCAGaactaat                                                                                >  1:226591/1‑134 (MQ=255)                                                                             ggCAAGTCTCCTTTCGAGAGATGAATTTGATAATCTTTATTAGTATATTATAATAGATAGTGTAATAAAAACCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGCGGGGGGTAGTTTATGGGGCAGATGTtgta                                                                               >  1:430406/1‑140 (MQ=255)                                                                             ggCAAGTCTCCTTTCGAGAGATGAATTTGATAATCTTTATTAGTATATTATAATAGATAGTGTAATAAAAACCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTGGTTTATGGGGCAAAAGTtata                                                                               >  1:430513/1‑140 (MQ=255)                                                                               cAAGTCTCCTTTCGAGAGATGAATTTGATAATCTTTATTAGTATATTATAATAGATAGTGTAATAAAAACCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAGATGTTATAtg                                                                             <  1:455216/140‑1 (MQ=255)                                                                                aaGTCTCCTTTCGAGAGATGAATTTGATAATCTTTATTAGTATATTATAATAGATAGTGTAATAAAAATCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAGATGTTATATGTGCAAGTTGc                                                                   <  2:281133/149‑1 (MQ=255)                                                                                 aGTCTCCTTTCGAGAGATGAATTTGATAATCTTTATTAGTATATTATAATAGATAGTGTAATAAAAACCTATCAAACCAATGGGGGCTACATATATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAGATGTTATAtgtg                                                                           >  1:7912/1‑140 (MQ=255)                                                                                   tctcCTTTCGAGAGATGAATTTGATAATCTTTATTAGTATATTATAATAGATAGTGTAATAAAAACCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAGATGTTATATGTGCa                                                                         <  1:1011166/140‑1 (MQ=255)                                                                                      ccTTTCGAGAGATGAATTTGATAATCTTTATTAGTATATTATAATAGATAGTGTAATAAAAACCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAGATGTTATATGTGCAAGt                                                                      <  1:762429/140‑1 (MQ=255)                                                                                      ccTTTCGAGAAATGAATTTGAAAATCTTTATTAGTATATTATAATAGATAGTGTAATAAAAACCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAGATGTTATATGTGCAAGt                                                                      <  1:50870/140‑1 (MQ=255)                                                                                          tCGAGAGATGAATTTGATAATCTTTATTAGTATATTATAATAGATAGTGTAATAAAAATCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGTAATTGTTGCAGATGTTATATGTGCAAGTTGCGTTAATgcgc                                                         <  2:550981/149‑1 (MQ=255)                                                                                           cGAGAGATGAATTTGATAATCTTTATTAGTATATTATAATAGATAGTGTAATAAAAACCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAGATGTTATATGTGCAAGTTGCGt                                                                 <  1:784345/140‑1 (MQ=255)                                                                                           cGAGAGATGAATTTGATAATCTTTATTAGCACGTTAAAAGAGGTAGTGTAATAAAAACCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAGATGTTATATGTGCAAGTTGCGt                                                                 <  1:778748/140‑1 (MQ=255)                                                                                             agagaTGAATTTGATAATCTTTATTAGTATATTATAATAGATAGTGTAATAAAAATCTATCAAGCCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGTGTATGGGGCAGATGTTATAGTTGCAAGTTGGGGTAATGCGCGaa                                                      >  2:453136/1‑149 (MQ=255)                                                                                                        ttaTAATCTTTATTAGGATTTTATAATAGATAGTGTAATAAAAACCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAGATGTTATATGTGCAAGTTGCGTTAATGCGCCAACa                                                    <  1:92813/138‑1 (MQ=255)                                                                                                          aTAATCTTTATTAGTATATTATAATAGATAGTGTAATAAAAATCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAGATGTTATATGTGCAAGTTGCGTTAATGCGCCAACATCGAAAGatat                                         <  2:132301/149‑1 (MQ=255)                                                                                                            aaTCTTTATTAGTATATTATAATAGATTGTGTAATAAAAACCTACCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAGATGTTATATGTGCAAGTTGCGTTAATGCGCCAACATCGa                                                <  1:643431/140‑1 (MQ=255)                                                                                                            aaTCTTTATTAGTATATTATAATAGATAGTGTAATAAAAACCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAGATGTTATATGTGCAAGTTGCGTTAATGCGCCAACATCGa                                                <  1:717039/140‑1 (MQ=255)                                                                                                            aaTCTTTATTAGTATATTATAATAGATAGTGTAATAAAAACCTATCAAACAAATGAGGGATAAATATATGGAGCACGTGAGTGTGGTAGTTTATGGGACAGATGTTATATGTGCAAGTGGCGTTAATGCGCCACCATCGa                                                >  1:839675/1‑140 (MQ=255)                                                                                                            aaTCTTGATTAGTATATTATAATAGATAGTGTAATAAAATCCTATCAAACCAATGGGGGATAAAGAGATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAGATGTTATATGTGCAAGTTGCGTTAATGCGCCAACATCGa                                                <  1:578354/140‑1 (MQ=255)                                                                                                               cTTTATTAGTATATTATAATAGATAGTGTAATAAAAACCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGAGTGGTAGTTTATGGGGCAGATGTTATATGTGCAAGTTGCGTTAATGCGCCAACGTCGCAAg                                             >  1:822856/1‑140 (MQ=255)                                                                                                                tttATTAGTATATTATAATAGTTAGTGTAATAAAAACCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGATTATGGGGCAGATGTTATATGTGCAAGTTGCGTTAATGCGCCAACATCGAAAGa                                            >  1:525089/1‑140 (MQ=255)                                                                                                                tttATTAGTATATTATAATAGATAGTGTAATAAAAACCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAGATGTTATATGTGCAAGTTGCGTTAATGCGCCAACATCGAAAGa                                            >  1:397626/1‑140 (MQ=255)                                                                                                                tttATTAGTATATTATAATAGATAGTGTAATAAAAACCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAGATGTTATATGTGCAAGTTGCGTTAATGAGCAAACATCGAAAGa                                            >  1:397543/1‑140 (MQ=255)                                                                                                                tctattaGCATATTATAATAGATAGTTTAATAAAAACCTATCAAACCAATGGGGGATAACTATATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAGATGTTATATGTGCAAGTTGCGTTAATGCGCCAACATCGAAAGa                                            <  1:522137/138‑1 (MQ=255)                                                                                                                      aGTATATTATAATAGATAGTGTAATAAAAACCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAGATGTTATATGTGCAAGTTGCGTTAATGCGCCAACATCGAAAGATATTTa                                      <  1:179443/140‑1 (MQ=255)                                                                                                                       gTATATTATAATAGATAGTGTAATAAAAATCTATCAAACCAATGGGGGATAAATATATGGAGCAAGTGAGTGTGGTAGTTTGTGGGGAAGGTGTTCTATGTGCCAGTTGCGTGAATGCGCCAACATCGAAAGATAGTTATGACTGGCTa                            >  2:499465/1‑149 (MQ=255)                                                                                                                       gTATATTATAATAGATAGTGTAATAAAAACCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAGATGTTATATGTGCAAGTTGCGTTAATGCGCCAACATCGAAAGATATTTAt                                     >  1:877476/1‑140 (MQ=255)                                                                                                                            ttatAATAGATAGTGTAATAAAAATCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAGATGTTATATGTGCAAGTTGCGTTAATGCGCCAACATCGAAAGATATTTATGACTGGCTACAGcc                       >  2:523627/1‑149 (MQ=255)                                                                                                                              ataataGATAGTGTAATAAAAACCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAGATGTTATATGTGCAAGTTGCGTTAATGCGCCAACATCGAAAGATATTTATGACTGGc                              <  1:188564/140‑1 (MQ=255)                                                                                                                              ataataGATAGTGCAATAAAAACCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAGATGTTATATGTGCAAGTTGCGTTAATGCGCCAACATCGAAAGATATTTATGACTGGc                              <  1:245986/140‑1 (MQ=255)                                                                                                                                aataGCTAGTTTAATGAAAATCTATCAAACCAATGGGGGATAAATATTTGGAGCACGTTAGTGTGGTAGTTTATGGCGCAGATGTTATATGTGCAAGTCGCGTTAATGCGCCAACATCGAAAGATATTTATGACTGGCTACAGCCGCTa                   <  2:387042/149‑1 (MQ=255)                                                                                                                                 atagatagTGTAATAAAAACCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAGATGTTATATGTGCAAGTTGCGTTAATGCGCCAACATCGAAAGATATTTATGACTGGCTAc                           >  1:662218/1‑140 (MQ=255)                                                                                                                                  tagatagTGTAATAAAAATCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAGATGTTATATGTGCAAGTTGCGTTAATGCGCCAACATCGAAAGATATTTATGACTGGCTACAGCCGCTAtt                 >  2:427149/1‑149 (MQ=255)                                                                                                                                  tagatagTGTAATAAAAATCTATCAAACCAAGGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAGATGTTATATGTGCAAGTTGCGTTAATGCGCCAACATCGAAAGATATTTATGACTGGCTACAGCCGCTAtt                 <  2:10925/149‑1 (MQ=255)                                                                                                                                  tagatagTGTAATAAAAACCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAGATGTTATATGTGCAAGTTGCGTTAATGCGCCAACATCGAAAGATATTTATGACTGGCTACa                          <  1:349767/140‑1 (MQ=255)                                                                                                                                  aagatagTGTAATAAAAACCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAGATGTTATATGTGCAAGTTGCGTTAATGCGCCAACATCGAAAGATATTTATGACTGGCTACa                          <  1:608253/139‑1 (MQ=255)                                                                                                                                     atagTGTAATAAAAATCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGTTTGTGGGGCAGATGTTAAATGTGCAAGTTGCGTTAATGCGCCAACAACGAAAGATATTTATGACTGGCTACCGCCGCTATTaaa              >  2:14616/1‑149 (MQ=255)                                                                                                                                     atagTGTAATAAAAATCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAGATGTTATATGTGCAAGTTGCGTTAATGCGCCAACATCGAAAGATATTTATGACTGGCTACAGCCGCTATTaaa              <  2:72510/149‑1 (MQ=255)                                                                                                                                      tagTGTAATAAAAACCTATCAAACCAAAGGGAGATAAATATATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAGATGTTATATGTGCAAGTTGCGTTAATGCGCCAACATCGAAAGATATTTATGACTGGCTACAGCCg                      <  1:381527/140‑1 (MQ=255)                                                                                                                                      tagTGTAACTAAAACCGTTCAAACCAATGGTGGATAAATAGATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAGATGTTATATGTGCAAGTTGCGTTAATGCGCCAACATCGAAAGATATTTATGACTGGCTACAGCCg                      <  1:76885/140‑1 (MQ=255)                                                                                                                                        gtgtAATAAAAATCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAGATGTTATATGTGCAAGTTGCGTTAATGCGCCAACATCGAAAGATATTTATGACTGGCTACAGCCGCTATTaaaaaa           >  2:601857/1‑148 (MQ=255)                                                                                                                                        gtgtAATAAAAACCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAGATGTTATATGTGCAAGTTGCGTTAATGCGCCAACATCGAAAGATATTTATGACTGGCTACAGCCGCt                    >  1:667183/1‑140 (MQ=255)                                                                                                                                        gtgtAATAAAAACCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAGATGTTATATGTGCAAGTTGCGTTAATGCGCCAACAGCGAAAGATATTTATGACTAGCTACAGCCGCt                    >  1:104767/1‑140 (MQ=255)                                                                                                                                        atgtAACAACAATCTATTAAAGCAATGGGGGATAAATATCTGGAGCACGTGAGTGTGGGAGTTTATGGGGCAGATGTTATATGTGCAAGTTGCGTTAATGCGCCAACATCGAAAGATATTTATGACTGGCTACAGctgaaatttaatga           <  2:248992/148‑14 (MQ=255)                                                                                                                                         tgtAATAAAAACCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAGATGTTATATGTGCAAGTTGCGTTAATGCGCCAACATCGAAAGATATTTATGACTGGCTACAGCCGCTa                   >  1:144995/1‑140 (MQ=255)                                                                                                                                         tgtAATAAAAACCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTCTGGTAGTTTATGGGGCAGATGTTATATGTGCAAGTTGCGTTAATGCGCCAACATCGAAAGATATTTATGACTGGCTACAGCCGCtc                   >  1:678880/1‑139 (MQ=255)                                                                                                                                                 aaaTCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAGATGTTATATGTGCAAGTTGCGTTAATGCGCCAACATCGAAAGATATTTATGACTGGCTACAGCCGCTATTAAAAAGAAAATAcca  >  2:592207/1‑148 (MQ=255)                                                                                                                                                 aaaCCTATCAAACCAATGGGGGATAAAGATATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAGATGTTATATGTGCAAGTCGCGTTAATGCGCCAACATCGAAAGATATTTATGACTGGCTACAGCCGCTATTAAAAAg           <  1:606089/140‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                  CGTAATAAAAATGGACGAAGACGTTCAATAACTTCTGCTACTTGATCAAACATCGTTGTATCTTCAGTAGGCATCAGGCAAGTCTCCTTTCGAGAGATGAATTTGATAATCTTTATTAGTATATTATAATAGATAGTGTAATAAAAATCTATCAAACCAATGGGGGATAAATATATGGAGCACGTGAGTGTGGTAGTTTATGGGGCAGATGTTATATGTGCAAGTTGCGTTAATGCGCCAACATCGAAAGATATTTATGACTGGCTACAGCCGCTATTAAAAAGAAAATACCC  >  CP000730/932886‑933178

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑