Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007301,929,9180AG60.3% 50.2 / 81.5 79intergenic (‑1001/‑167)USA300HOU_1794/USA300HOU_1796hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (16/15);  new base G (25/22);  total (42/37)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.12e-01
Rejected as consensus: Frequency below/above cutoff threshold.

AAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAG‑GCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATACAA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATT  >  CP000730/1929771‑1930056
                                                                                                                                                         |                                                                                                                                                 
aaacAAGTCACTGTGCTTGTATATTTGCCTCTGATATAATACTAGAGTCGCCTATCTCTCAG‑GCGTCAATTTAGACGCAGAAAGGAGGTG‑TA‑TAA‑G‑G‑GGATGCTTATTTTCGTTCACATCATAGCACCAGTAATCAGTGGCTGTGCCAt                                                                                                                                                  <  1:235881/146‑1 (MQ=255)
    aagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAG‑GCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTTTTGCGt                                                                                                                                             >  1:7118/10‑149 (MQ=255)
    aagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAG‑GCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGt                                                                                                                                             <  1:38485/140‑1 (MQ=255)
     agtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAG‑GCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGta                                                                                                                                            <  1:565592/141‑2 (MQ=255)
     agtagatatgCTTGTATATTCACAGATGGTATAATAATAGACTCGCCTATCTCTCAG‑GCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGta                                                                                                                                            <  1:23765/141‑2 (MQ=255)
       tagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAG‑GCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatt                                                                                                                                          <  1:215227/143‑1 (MQ=255)
       tagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAG‑GCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatt                                                                                                                                          <  1:474952/143‑1 (MQ=255)
          ctatgCTTGCATATTCCCAGCTGGTATAATAATAGAGTCGCCTATCCCTCCG‑GCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑C‑TTTGCTAATCATTTTCGTTCACATCATAGCACCCGTCATCAGTGGCTGTGCTGTTGCGtattata                                                                                                                                       <  1:185145/146‑7 (MQ=255)
            atgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAG‑GCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattatact                                                                                                                                     <  1:48470/148‑9 (MQ=255)
              gCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAG‑GCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTa                                                                                                                                   >  1:512408/1‑149 (MQ=255)
              gCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAG‑GCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCGGTGGCTGTGCTGTTGCGTATTATACttt                                                                                                                                   >  1:167219/1‑148 (MQ=255)
                ttGTATCTTTCCCGATGATATAATAGTAGAGTCGCCTCACTCTAAGCACATC‑GTGAACACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTAt                                                                                                                                  <  1:166137/149‑1 (MQ=255)
                ttGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCCCTCAG‑GCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTAt                                                                                                                                  <  1:369984/149‑1 (MQ=255)
                 tgtatattcacagatggtATAATAATAGAGTCGCCTATCTCTCAG‑GCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑CTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTg                                                                                                                                >  1:518630/13‑149 (MQ=255)
                 tGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAG‑GCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCAGAGAAGCAGGCATCAGTGGCTGTGCTGTTGCGtatgatactgattg                                                                                                                                >  1:462657/1‑136 (MQ=255)
                  gTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAG‑GCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTgg                                                                                                                               <  1:257741/149‑1 (MQ=255)
                   tatattcacagatggtATAATAATAGAGTCGCCTATCTCTCAG‑GCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑C‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGc                                                                                                                              <  1:230245/139‑1 (MQ=255)
                   tataTTCACAGATGGTATAATAATAGTGTCGCCTATCTATCAG‑GCGGCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGc                                                                                                                              <  1:261608/149‑1 (MQ=255)
                     tattcacagatggtATAATAATAGAGTCGCCTATCTCTCAG‑GCGTCCAAT‑‑CACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCtt                                                                                                                            <  1:194333/141‑2 (MQ=255)
                     tattcacagatggtATAATAATAGAGTCGCCTATCTCTCAG‑GCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCtt                                                                                                                            <  1:370698/141‑2 (MQ=255)
                     tattcacagatggtATAATAATAGAGTCGCCTATCTCTCAG‑GCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCtt                                                                                                                            <  1:601968/141‑2 (MQ=255)
                      attcacagatggtATAATAATAGAGTCGCCTATCTCTCAG‑GCGTCAATT‑‑GACGAAGAGGGGAGATGCGT‑TAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGGGTATTATACTTATTTGCtta                                                                                                                           >  1:499020/8‑147 (MQ=255)
                        ttGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAG‑GCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAg                                                                                                                          <  1:225705/149‑1 (MQ=255)
                        ttGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAG‑GCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAg                                                                                                                          <  1:343109/149‑1 (MQ=255)
                        tcacagatggtATAATAATAGAGTCGCCTATCTCTCAG‑GCGTCAATT‑‑GACGAATAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGt                                                                                                                         >  1:262933/6‑149 (MQ=255)
                        tcacagatggtATAATAATAGAGTCGCCTATCTCTCAG‑GCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCGCCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGt                                                                                                                         >  1:441762/6‑149 (MQ=255)
                        tcacagatggtATAATAATAGAGTCGCCTATCTCTCAG‑GCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑G‑T‑TGCTAATCATTTTCGTTCGCATCATAGCACCAGTCATCAGTGGCTGGGCTGTTGCGTATTATACTTGTTGGCTTAGt                                                                                                                         >  1:43040/6‑149 (MQ=255)
                        tcacagatggtATAATAATAGAGTCGCCTATCTCTCAG‑GCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGATGTTACGTATTATACTTATTGGCTTAGt                                                                                                                         >  1:337920/6‑149 (MQ=255)
                        tcacagatggtATAATAATAGAGTCGCCTATCTCTCAG‑GCGTCAATT‑‑GACGAAGAGAAGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTGCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTCGcgtagt                                                                                                                         >  1:15390/6‑144 (MQ=255)
                         cacagatggtATAATAATAGAGTCGCCTATCTCTCAG‑GCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTTGCTTAGTa                                                                                                                        >  1:149264/5‑149 (MQ=255)
                         cacagatggtATAATAATAGAGTCGCCTATCTCTCAG‑GCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTa                                                                                                                        >  1:35678/5‑149 (MQ=255)
                         cacagatggtATAATAATAGAGTCGCCTATCTCTCAG‑GCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTa                                                                                                                        >  1:53496/5‑149 (MQ=255)
                           cagatggtATAATAATAGAGTCGCCTATCTCTCAG‑GCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaaa                                                                                                                      >  1:345128/3‑147 (MQ=255)
                           cagatggtATAATAATAGAGTCGCCTATCTCTCAG‑GCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaaa                                                                                                                      >  1:552474/3‑147 (MQ=255)
                            agatggtATAATAATAGAGTCGCCTATCTCTCAG‑GCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaaac                                                                                                                     >  1:383103/2‑146 (MQ=255)
                            agatggtATAATAATAGAGTCGCCTATCTCTCAG‑GCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAAc                                                                                                                     >  1:134331/2‑149 (MQ=255)
                             gatgatATAATAGTAGAGTCGCCTATCTCTCAG‑GCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGGTTTTTTCTTATTGGCTAAGTAGAc                                                                                                                     >  1:139920/1‑149 (MQ=255)
                               tggtataATAATAGAGTCGCCTATCTCTCAG‑GCGTCAATT‑‑GACGATGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa                                                                                                                  <  1:547621/146‑1 (MQ=255)
                               tggtataATAATAGAGTCGCCTATCTCTCAG‑GCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa                                                                                                                  <  1:485990/146‑1 (MQ=255)
                               ggggataataataGAGTCGCCTATCTCTCAG‑GCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑C‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa                                                                                                                  <  1:458035/145‑1 (MQ=255)
                                ggtataATAATAGAGTCGCCTATCTCTCAG‑GCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑a                                                                                                               <  1:261591/147‑1 (MQ=255)
                                gatATAATAGTAGAGTCGCCTATCTCTCAG‑GCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCa                                                                                                                  <  1:375986/149‑1 (MQ=255)
                                 atatAATAGTAGAGTCGCCTATCTCTCAG‑GCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCa‑‑a                                                                                                               >  1:83399/1‑149 (MQ=255)
                                   ataataataGAGTCGCCTATCTCTCAG‑GCGTCAAGT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑A‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaa                                                                                                            <  1:138827/149‑4 (MQ=255)
                                   ataataGTAGAGTCGCCTATCTCTCAG‑GCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATa                                                                                                             >  1:487375/1‑149 (MQ=255)
                                     aataatAGAGTCGCCTATCTCTCAG‑GCGTCAATT‑‑GGCGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATCGCACCCGTCATCAGTGGCTGTGCTGTTGCGTGTTAGACTTATTGGGTTAGTacgccccgcaagt                                                                                                            >  1:153926/1‑137 (MQ=255)
                                      ataatagAGTCGCCTATCTCTCAG‑GCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCCGTACTAATTGTCTTTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaata                                                                                                         >  1:113327/5‑143 (MQ=255)
                                        aatagAGTCGCCTATCTCTCAG‑GCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTTTCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataat                                                                                                       <  1:262600/147‑9 (MQ=255)
                                        aatagAGTCGCCTATCTCTCAG‑GCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataat                                                                                                       >  1:232889/3‑141 (MQ=255)
                                        aatagAGGCGCCTATCTCTCAG‑GCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataat                                                                                                       <  1:487823/147‑9 (MQ=255)
                                         atagAGTCGCCTATCTCTCAG‑GCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataatt                                                                                                      >  1:547988/2‑140 (MQ=255)
                                          tagAGTCGCCTATCTCTCAG‑GCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATACAA‑‑AATa                                                                                                    >  1:484086/1‑149 (MQ=255)
                                          tagACTCGCCTTTCTCCCAG‑GCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataatta                                                                                                     <  1:188583/149‑11 (MQ=255)
                                           agagTCGCCTATCTCTCAG‑GCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATACAA‑‑AATAg                                                                                                   >  1:418017/1‑149 (MQ=255)
                                           agagTCGCCTATCTCTCAG‑GCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataattaa                                                                                                    >  1:129251/1‑138 (MQ=255)
                                           agagTCGCCTATCTCTCAG‑GCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataattaa                                                                                                    >  1:516923/1‑138 (MQ=255)
                                             gggcGCCTATCTCTCAG‑GCGTCAATTTAGACCGAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATACAA‑‑AATAGGt                                                                                                 <  1:74266/146‑1 (MQ=255)
                                             agTCGCCTATCTCTCAG‑GCGTCTATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTGAGTAGACGCA‑‑ATACAA‑‑AATAGGt                                                                                                 >  1:313012/1‑149 (MQ=255)
                                             agTCGCCTATCTCTCAG‑GCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATACAA‑‑AATAGGt                                                                                                 >  1:91289/1‑149 (MQ=255)
                                             agTCGCCTATCTCTCAG‑GCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATACAA‑‑AATAGGt                                                                                                 <  1:29321/149‑1 (MQ=255)
                                             agTCGCCTATCTCTCAG‑GCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataattaata                                                                                                  >  1:245457/1‑136 (MQ=255)
                                             agTCGCCTATCTCTCAG‑GCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataattaata                                                                                                  >  1:485603/1‑136 (MQ=255)
                                               tCGCCTATCTCTCAG‑GCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATACAA‑‑AATAGGTGa                                                                                               <  1:545390/149‑1 (MQ=255)
                                                cGCCTATCTCTCAG‑GCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAAAA‑‑AATAGGTGAc                                                                                              >  1:345798/1‑149 (MQ=255)
                                                         ctcAG‑GCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATACAA‑‑AATAGGTGAC‑ATAT‑AGCC‑g                                                                                  >  1:244149/1‑149 (MQ=255)
                                                            aG‑GCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCCTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATACAA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCAc                                                                               <  1:162746/149‑1 (MQ=255)
                                                            aG‑GCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑C‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATACAA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCAc                                                                               <  1:207062/149‑1 (MQ=255)
                                                                                 agagGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATACAA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTa                                                           >  1:455582/1‑149 (MQ=255)
                                                                                                       tGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATACAA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAgggg                                          >  1:286054/1‑149 (MQ=255)
                                                                                                       tGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATACAA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAAGAGTGAgggg                                          >  1:529002/1‑149 (MQ=255)
                                                                                                             ttATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATACAA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGgt                                    <  1:238110/149‑1 (MQ=255)
                                                                                                             ttATTTTCGTTCACATCATAGCACCAGTCACCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATACAA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGgt                                    <  1:192350/149‑1 (MQ=255)
                                                                                                                  ttCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACACA‑‑ATACAA‑‑AATAGGTGAC‑ATAT‑AGTC‑ATACCAATAAAAATACCGTAACTAACTCTAAAAGTGAGGGGGTTGGTGtata                               >  1:135998/1‑149 (MQ=255)
                                                                                                                       tCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATACAA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCACCCATAAAAATCCCCTCACTACCGCACATAGTGAGGGGATTGGTGTATGCGTaa                          >  1:139181/1‑149 (MQ=255)
                                                                                                                                aGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCAACAAATAATTAATAGGCGACTTTATAAGCCAGCATCGA‑AAAAATCCCCACACTACTGC‑AATAGTGTGGGGATTGgtgcattaattgttaa                      <  1:13644/149‑14 (MQ=255)
                                                                                                                                       gTCATCAGTGGCTGTGCCATGGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATACAA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCCCACGACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTg          <  1:467568/149‑1 (MQ=255)
                                                                                                                                        tcatcaGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATACAA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGt         <  1:597857/149‑1 (MQ=255)
                                                                                                                                             aGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATACAA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTaa    >  1:554044/1‑149 (MQ=255)
                                                                                                                                               tGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATACAA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAAtt  >  1:46362/1‑149 (MQ=255)
                                                                                                                                                         |                                                                                                                                                 
AAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAG‑GCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATACAA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATT  >  CP000730/1929771‑1930056

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑