| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 2812209 = | 252 (3.650) | 3 (0.050) | 3/280 | 2.2 | 1.3% | coding (6120/6816 nt) | sasA | serine‑threonine rich protein |
| ? | CP000730 | 2812258 = | 213 (3.310) | coding (6071/6816 nt) | sasA | serine‑threonine rich protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTGGTTCCTTAAGTACATCGATATCAACATCAATGTCAATGAGTGCTAGTACATCGTCATCACAAAGCACATCGGTGTCGACATCATTATCAACATCAGACAGTATCAGTGATTCTACTTCAATAAGTATCAGTGGTTCACAAAGTACAGTAGAATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2812366‑2812209‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtagaatcaCTGATACTGTCTGATGTTGATAATGATGTCGACACCGATGTGCTTTGTGATGACGATGTACTAGCACTCATTGACATTGATGTTGATATCGATGTACTTAAGGAACCAGATGCACTTGTACTTGTTGACTGGCTTTGTGACATTGAATCA > CP000730/2812258‑2812407 CTGGTTCCTTAAGTACATCGATATCAACATCAATGTCAATGAGTGCTAGTACATCGTCATCACAAAGCACATCGGTGTCGACATCATTATCAACATCAGACAGTATCAGTGATTCTACTTCAATAAGTATCAGTGGTTCACAAAGTACAGT < 2:789565/151‑1CTGGTTCCTTAAGTACATCGATATCAACATCAATGTCAATGAGTGCTAGTACATCGTCATCACAAAGCACATCGGTGTCGACATCATTATCAACATCAGACAGTATCAGTGATTCTACTTCAATAAGTATCAGTGGTTCACAAAGTACAGT < 2:556991/151‑1CTGGTTCCTTAAGTACATCGATATCAACATCAATGTCAATGAGTGCTAGTACATCGTCATCACAAAGCACATCGGTGTCGACATCATTATCAACATCAGACAGTATCAGTGATTCTACTTCAATAAGTATCAGTGGTTCACAAAGTACAGT < 1:666961/151‑1 TGGTTCCTTAAGTACATCGATATCAACATCAATGTCAATGAGTGCTAGTACATCGTCATCACAAAGAACATCGGTGTCGACATCATTATCAACATCAGACAGTATCAGTGATTCTACTTCAATAAGTATCAGTGGTTCACAAAGTACAGTA > 1:555578/1‑151 GGTTCCTTAAGTACCTCGATATCAACATCAATGTCAATGAGTGCTAGTACATCGTCATCACAAAGCACATCGGTGTCGACATCATTATCAACATCAGACAGTATCAGTGATTCTACTTCAATAAGTATCAGTGGTTCACAAAGTACAGTAG > 1:565227/1‑151 GGTTCCTTAAGTACATCGATATCAACATCAATGTCAATGAGTGCTAGTACATCGTCATCACAAAGCACATCGGTGTCGACATCATTATCAACATCAGACAGTATCAGTGATTCTACTTCAATAAGTATCAGTGGTTCACAAAGTACAGTAG < 2:352556/151‑1 GGTTCCTTAAGTACATCGATATCAACATCAATGTCAATGAGTGCTAGTACATCGTCATCACAAAGCACATCGGTGTCGACATCATTATCAACATCAGACAGTATCAGTGATTCTACTTCAATAAGTATCAGTGGTTCACAAAGTACAGTAG > 2:834228/1‑151 GTTCCTTAAGTACATCGATATCAACATCAATGTCAATGAGTGCTAGTACATCGTCATCACAAAGCACATCGGTGTCGACATCATTATCAACATCAGACAGTATCAGTGATTCTACTTCAATAAGTATCAGTGGTTCACAAAGTACAGTAGA > 2:144594/1‑151 GTTCCTTAAGTACATCGATATCAACATCAATGTCAATGAGTGCTAGTACATCGTCATCACAAAGCACATCGGTGTCGACATCATTATCAACATCAGACAGTATCAGTGATTCTACTTCAATAAGTATCAGTGGTTCACAAAGTACAGTAGA > 2:144612/1‑151 TTCCTTAAGTACATCGATATCAACATCAATGTCAATGAGTGCTAGTACATCGTCATCACAAAGCACATCGGTGTCGACATCATTATCAACATCAGACAGTATCAGTGATTCTACTTCAATAAGTATCAGTGGTTCACAAAGTACAGTAGAA < 2:125024/151‑1 TTCCTTAAGTACATCGATATCAACATCAATGTCAATGAGTGCTAGTACATCGTCATCACAAAGCACATCGGTGTCGACATCATTATCAACATCAGACAGTATCAGTGATTCTACTTCAATAAGTATCAGTGGTTCACAAAGTACAGTAGAA > 2:953112/1‑151 TTCCTTAAGTACATCGATATCAACATCAATGTCAATGAGTGCTAGTACATCGTCATCACAAAGAACATCGGTGTCGACATCATTATCAACATCAGACAGTATCAGTGATTCTACTTCAATAAGTATCAGTGGTTCACAAAGTACAGTAGAA > 2:952877/1‑151 CCTTAAGTACATCGATATCAACATCAATGTCAATGAGTGCTAGTACATCGTCATCACAAAGCACATCGGTGTCGACATCATTATCAACATCAGACAGTATCAGTGATTCTACTTCAATAAGTATCAGTGGTTCACAAAGTACAGTAGAATC < 2:183856/151‑1 CTTAAGTACATCGATATCAACATCAATGTCAATGAGTGCTAGTACATCGTCATCACAAAGCACATCGGTGTCGACATCATTATCAACATCAGACAGTATCAGTGATTCTACTTCAATAAGTATCAGTGGTTCACAAAGTACAGTAGAATCA > 1:331554/1‑151 CTTAAGTACATCGATATCAACATCAATGTCAATGAGTGCTAGTACATCGTCATCACAAAGCACATCGGTGTCGACATCATTATCAACATCAGACAGTATCAGTGATTCTACTTCAATAAGTATCAGTGGTTCACAAAGTACAGTAGAATCA > 2:567977/1‑151 GACAGTATCAGTGATTCTACTTCAATAAGTATCAGTGGTTCACAAAGTACAGTAGAATCACTGATACTGTCTGATGTTGATAATGATGTCGACACCGATGTGCTTTGTGATGACGATGTACTAGCACTCATTGACATTGATGTTGATATCG > 2:567385/1‑151 TGATTCTACTTCAATAAGTATCAGTGGTTCACAAAGTACAGTAGAATCACTGATACTGTCTGATGTTGATAATGATGTCGACACCGATGTGCTTTGTGATGACGATGTACTAGCACTCATTGACATTGATGTTGATATCGATGTACTTAAG > 2:85983/1‑151 ATTCTACTTCAATAAGTATCAGTGGTTCACAAAGTACAGTAGAATCACTGATACTGTCTGATGTTGATAATGATGTCGACACCGATGTGCTTTGTGATGACGATGTACTAGCACTCATTGACATTGATGTTGATATCGATGTACTTAAGGA > 1:902373/1‑151 AGTAGAATCACTGATACTGTCTGATGTTGATAATGATGTCGACACCGATGTGCTTTGTGATGACGATGTACTAGCACTCATTGACATTGATGTTGATATCGATGTACTTAAGGAACCAGATGCACTTGTACTTGTTGACTGGCTTTGTGAC < 1:590284/151‑1 AGTAGAATCACTGATACTGTCTGATGTTGATAATGATGTCGACACCGATGTGCTTTGTGATGACGATGTACTAGCACTCATTGACATTGATGTTGATATCGATGTACTTAAGGAACCAGATGCACTTGTACTTGTTGACTGGCTTTGTGAC > 1:948697/1‑151 GTAGAATCACTGATACTGTCTGATGTTGATAATGATGTCGACACCGATGTGCTTTGTGATGACGATGTACTAGCACTCATTGACATTGATGTTGATATCGATGTACTTAAGGAACCAGATGCACTTGTACTTGTTGACTGGCTTTGTGACA > 1:712664/1‑151 GTAGAATCACTGATACTGTCTGATGTTGATAATGATGTCGACACCGATGTGCTTTGTGATGACGATGTACTAGCACTCATTGACATTGATGTTGATATCGATGTACTTAAGGAACCAGATGCACTTGTACTTGTTGACTGGCTTTGTGACA > 1:712603/1‑151 GTAGAATCACTGATACTGTCTGATGTTGATAATGATGTCGACACCGATGTGCTTTGTGATGACGATGTACTAGCACTCATTGACATTGATGTTGATATCGATGTACTTAAGGAACCAGATGCACTTGTACTTGTTGACTGGCTTTGTGACA < 1:170805/151‑1 TAGAATCACTGATACTGTCTGATGTTGATAATGATGTCGACACCGATGTGCTTTGTGATGACGATGTACTAGCACTCATTGACATTGATGTTGATATCGATGTACTTAAGGAACCAGATGCACTTGTACTTGTTGACTGGCTTTGTGACAT < 2:693701/151‑1 TAGAATCACTGATACTGTCTGATGTTGATAATGATGTCGACACCGATGTGCTTTGTGATGACGATGTACTAGCACTCATTGACATTGATGTTGATATCGATGTACTTAAGGAACCAGATGCACTTGTACTTGTTGACTGGCTTTGTGACAT < 1:534215/151‑1 nGAATCACTGATACTGTCTGATGTTGATAATGATGTCGACACCGATGTGCTTTGTGATGACGATGTACTAGCACTCATTGACATTGATGTTGATATCGATGTACTTAAGGAACCAGATGCACTTGTACTTGTTGACTGGCTTTGTGACATT > 2:706792/2‑151 AGAATCACTGATACTGTCTGATGTTGATAATGATGTCGACACCGATGTGCTTTGTGATGACGATGTACTAGCACTCATTGACATTGATGTTGATATCGATGTACTTAAGGAACCAGATGCACTTGTACTTGTTGACTGGCGTTGTGACATT > 2:856438/1‑151 GAATCACTGATACTGTCTGATGTTGATAATGATGTCGACACCGATGTGCTTTGTGATGACGATGTACTAGCACTCATTGACATTGATGTTGATATCGATGTACTTAAGGAACCAGATGCACTTGTACTTGTTGACTGGCTTTGTGACATTG > 1:317763/1‑151 GAATCACTGATACTGTCTGATGTTGATAATGATGTCGACACCGATGTGCTTTGTGATGACGATGTACTAGCACTCATTGACATTGATGTTGATATCGATGTACTTAAGGAACCAGATGCACTTGTACTTGTTGACTGGCTTTGTGACATTG < 1:316529/151‑1 GAATCACTGATACTGTCTGATGTTGATAATGATGTCGACACCGATGTGCTTTGTGATGACGATGTACTAGCACTCATTGACATTGATGTTGATATCGATGTACTTAAGGAACCAGATGCACTTGTACTTGTTGACTGGCTTTGTGACATTG < 1:521881/151‑1 GAATCACTGATACTGTCTGATGTTGATAATGATGTCGACACCGATGTGCTTTGTGATGACGATGTACTAGCACTCATTGACATTGATGTTGATATCGATGTACTTAAGGAACCAGATGCACTTGTACTTGTTGACTGGCTTTGTGACATTG > 1:6491/1‑151 GAATCACTGATACTGTCTGATGTTGATAATGATGTCGACACCGATGTGCTTTGTGATGACGATGTACTAGCACTCATTGACATTGATGTTGATATCGATGTACTTAAGGAACCAGATGCACTTGTACTTGTTGACTGACTTTGTGACATTG < 2:528806/151‑1 AATCACTGATACTGTCTGATGTTGATAATGATGTCGACACCGATGTGCTTTGTGATGACGATGTACTAGCACTCATTGACATTGATGTTGATATCGATGTACTTAAGGAACCAGATGCACTTGTACTTGTTGACTGGCTTTGTGACATTGA > 2:390247/1‑151 AATCACTGATACTGTCGGATGTTTATAATGATTGCGACACCGATGTGCTTTGTGATGACGATGTACTAGCACTCATTCACATTGATGTTGATATCGATGTACTTAAGGAACCAGATGCACTTGTACTTGTTGACTGGCTTTGTGACATTGA < 2:984086/151‑1 ATCACTGATACTGTCTGATGTTGATAATGATGTCGACACCGATGTGCTTTGTGATGACGATGTACTAGCACTCATTGACATTGATGTTGATATCGATGTACTTAAGGAACCAGATGCACTTGTACTTGTTGACTGGCTTTGTGACATTGAA > 2:731718/1‑151 ATCACTGATACTGTCTGATGTTGATAATGATGTCGACACCGATGTGCTTTGTGATGACGATGTACTAGCACTCATTGACATTGATGTTGATATCGATGTACTTAAGGAACCAGATGCACTTGTACTTGTTGACTGGCTTTGTGACATTGAA < 1:260378/151‑1 ATCACTGATACTGTCTGATGTTGATAATGATGTCGACACCGATGTGCTTTGTGATGACGATGTACTAGCACTCATTGACATTGATGTTGATATCGATGTACTTAAGGAACCAGATGCACTTGTACTTGTTGACTGGCTTTGTGACATTGAA > 2:579021/1‑151 CACTGATACTGTCTGATGTTGATAATGATGTCGACACCGATGTGCTTTGTGATGACGATGTACTAGCACTCATTGACATTGATGTTGATATCGATGTACTTAAGGAACCAGATGCACTTGTACTTGTTGACTGGCTTTGTGACATTGAATC > 1:414733/1‑151 CACTGATACTGTCTGATGTTGATAATGATGTCGACACCGATGTGCTTTGTGATGACGATGTACTAGCACTCATTGACATTGATGTTGATATCGATGTACTTAAGGAACCAGATGCACTTGTACTTGTTGACTGGCTTTGTGACATTGAATC < 2:384069/151‑1 ACTGATACTGTCTGATGTTGATAATGATGTCGACACCGATGTGCTTTGTGATGACGATGTACTAGCACTCATTGACATTGATGTTGATATCGATGTACTTACGGAACCAGATGCACTTGTACTTTTTGACTGTCTTTTTTACCTTGAATCA > 2:133140/1‑151 ACTGATACTGTCTGATGTTGATAATGATGTCGACACCGATGTGCTTTGTGATGACGATGTACTAGCACTCATTGACATTGATGTTGATATCGATGTACTTAAGGAACCAGATGCACTTGTACTTGTTGACTGGCTTTGTGACATTGAATCA < 1:225984/151‑1 ACTGATACTGTCTGATGTTGATAATGATGTCGACACCGATGTGCTTTGTGATGACGATGTACTAGCACTCATTGACATTGATGTTGATATCGATGTACTTAAGGAACCAGATGCACTTGTACTTGTTGACTGGCTTTGTGACATTGAATCA < 1:13957/151‑1 CTGGTTCCTTAAGTACATCGATATCAACATCAATGTCAATGAGTGCTAGTACATCGTCATCACAAAGCACATCGGTGTCGACATCATTATCAACATCAGACAGTATCAGTGATTCTACTTCAATAAGTATCAGTGGTTCACAAAGTACAGTAGAATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2812366‑2812209‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtagaatcaCTGATACTGTCTGATGTTGATAATGATGTCGACACCGATGTGCTTTGTGATGACGATGTACTAGCACTCATTGACATTGATGTTGATATCGATGTACTTAAGGAACCAGATGCACTTGTACTTGTTGACTGGCTTTGTGACATTGAATCA > CP000730/2812258‑2812407 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |