| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 588673 | 134 (1.940) | 5 (0.080) | 5/284 | 1.9 | 3.7% | coding (2577/3552 nt) | rpoB | DNA‑directed RNA polymerase subunit beta |
| ? | CP000730 | = 588680 | 130 (1.990) | coding (2584/3552 nt) | rpoB | DNA‑directed RNA polymerase subunit beta | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATCACAAGAGATATTCCTAATGTTTCTGAAAGTGCACTTAAGAACTTAGACGATCGTGGTATCGTTTATATTGGTGCAGAAGTAAAAGATGGAGATATTTTAGTTGGTAAAGTAACGCCTAAAGGTGTAACTGAGTTAACTGCCGAAGAAAGATTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/588518‑588673‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagattgCATGTAACAATCTTTCTTCGGCAGTTAACTCAGTTACACCTTTAGGCGTTACTTTACCAACTAAAATATCTCCATCTTTTACTTCTGCACCAATATAAACGATACCACGATCGTCTAAGTTCTTAAGTGCACTTTCAGAAACATTAGGAA < CP000730/588680‑588531 ATCACAAGAGATATTCCTAATGTTTCTGAAAGTGCACTTAAGAACTTAGACGATCGTGGTATCGTTTATATTGGTGCAGAAGTAAAAGATGGAGATATTTTAGTTGGTAAAGTAACGCCTAAAGGTGTAACTGAGTTAACTGCCGAAGAAA < 1:406305/151‑1 TCACAAGAGATATTCCTACTGTTTCTGAAAGTGCGCTTAAGAACTTAGACGATCGTGGTATCGTTTATATTGGTGCAGAAGTAAAAGATGGAGATATTTTAGTTGGTAAAGTAACGCCTAAAGGTGTAACTGAGTTAACTGCCGAAGAAAG < 1:981664/151‑1 TCACAAGAGATATTCCTAATGTTTCTGAAAGTGCACTTAAGAACTTAGACGATCGTGGTATCGTTTATATTGGTGCAGAAGTAAAAGATGGAGATATTTTAGTTGGTAAAGTAACGCCTAAAGGTGTAACTGAGTTAACTGCCGAAGAAAG < 1:963154/151‑1 TCACAAGAGATATTCCTAATGTTTCTGAAAGTGCACTTAAGAACTTAGACGATCGTGGTATCGTTTATATTGGTGCAGAAGTAAAAGATGGAGATATTTTAGTTGGTAAAGTAACGCCTAAAGGTGTAACTGAGTTAACTGCCGAAGAAAG < 2:643160/151‑1 TCACAAGAGATATTCCTAATGTTTCTGAAAGTGCACTTAAGAACTTAGACGATCGTGGTATCGTTTATATTGGTGCAGAAGTAAAAGATGGAGATATTTTAGTTGGTAAAGTAACGCCTAAAGGTGTAACTGAGTTAACTGCCGAAGAAAG > 1:674872/1‑151 CACAAGAGATATTCCTAATGTTTCTGAAAGTGCACTTAAGAACTTAGACGATCGTGGTATCGTTTATATTGGTGCAGAAGTAAAAGATGGAGATATTTTAGTTGGTAAAGTAACGCCTAAAGGTGTAACTGAGTTAACTGCCGAAGAAAGA > 1:434542/1‑151 CACAAGAGATATTCCTAATGTTTCTGAAAGTGCACTTAAGAACTTAGACGATCGTGGTATCGTTTATATTGGTGCAGAAGTAAAAGATGGAGATATTTTAGTTGGTAAAGTAACGCCTAAAGGTGTAACTGAGTTAACTGCCGAAGAAAGA > 2:52678/1‑151 CAAGAGATATTCCTAATGTTTCTGAAAGTGCACTTAAGAACTTAGACGATCGTGGTATCGTTTATATTGGTGCAGAAGTAAAAGATGGAGATATTTTAGTTGGTAAAGTAACGCCTAAAGGTGTAACTGAGTTAACTGCCGAAGAAAGATT > 2:979590/1‑151 ATTCCTAATGTTTCTGAAAGTGCACTTAAGAACTTAGACGATCGTGGTATCGTTTATATTGGTGCAGAAGTAAAAGATGGAGATATTTTAGTTGGTAAAGTAACGCCTAAAGGTGTAACTGAGTTAACTGCCGAAGAAAGATTGCATGTAA < 1:569030/151‑1 TTCCTAATGTTTCTGAAAGTGCACTTAAGAACTTAGACGATCGTGGTATCGTTTATATTGGTGCAGAAGTAAAAGATGGAGATATTTTAGTTGGTAAAGTAACGCCTAAAGGTGTAACTGAGTTAACTGCCGAAGAAAGATTGCATGTAAC < 1:831288/151‑1 TCTGAAAGTGCACTTAAGAACTTAGACGATCGTGGTATCGTTTATATTGGTGCAGAAGTAAAAGATGGAGATATTTTAGTTGGTAAAGTAACGCCTAAAGGTGTAACTGAGTTAACTGCCGAAGAAAGATTGCATGTAACAATCTTTCTTC < 1:755596/151‑1 AAGATGGAGATATTTTAGTTGGTAAAGTAACGCCTAAAGGTGTAACTGAGTTAACTGCCGAAGAAAGATTGCATGTAACAATCTTTCTTCGG < 1:851824/92‑1 AAGATGGAGATATTTTAGTTGGTAAAGTAACGCCTAAAGGTGTAACTGAGTTAACTGCCGAAGAAAGATTGCATGTAACAATCTTTCTTCGG > 2:851824/1‑92 ATTGCATGTAACAATCTTTCTTCGGCAGTTAACTCAGTTACACCTTTAGGCGTTACTTTACCAACTAAAATATCTCCATCTTTTACTTCTGCACCAATATAAACGATACCACGATCGTCTAAGTTCTTAAGTGCACTTTCAGAAACATTAG > 1:823227/1‑151 ATTGCATGTAACAATCTTTCTTCGGCAGTTAACTCAGTTACACCTTTAGGCGTTACTTTACCAACTAAAATATCTCCATCTTTTACTTCTGCACCAATATAAACGATACCACGATCGTCTAAGTTCTTAAGTGCACTTTCAGAAACATTAG < 2:373155/151‑1 ATTGCATGTAACAATCTTTCTTCGGCAGTTAACTCAGTTACACCTTTAGGCGTTACTTTACCAACTAAAATATCTCCATCTTTTACTTCTGCACCAATATAAACGATACCACGATCGTCTAAGTTCTTAAGTGCACTTTCAGAAACATTAG < 1:14349/151‑1 TTGCATGTAACAATCTTTCTTCGGCAGTTAACTCAGTTACACCTTTAGGCGTTACTTTACCAACTAAAATATCTCCATCTTTTACTTCTGCACCAATATAAACGATACCACGATCGTCTAAGTTCTTAAGTGCACTTTCAGAAACATTAGG < 2:63889/151‑1 TTGCATGTAACAATCTTTCTTCGGCAGTTAACTCAGTTACACCTTTAGGCGTTACTTTACCAACTAAAATATCTCCATCTTTTACTTCTGCACCAATATAAACGATACCACGATCGTCTAAGTTCTTAAGTGCACTTTCAGAAACATTAGG > 1:375403/1‑151 GCATGTAACAATCTTTCTTCGGCAGTTAACTCAGTTACACCTTTAGGCGTTACTTTACCAACTAAAATATCTCCATCTTTTACTTCTGCACCAATATAAACGATACCACGATCGTCTAAGTTCTTAAGTGCACTTTCAGAAACATTAGGAA > 1:462553/1‑151 GCATGTAACAATCTTTCTTCGGCAGTTAACTCAGTTACACCTTTAGGCGTTACTTTACCAACTAAAATATCTCCATCTTTTACTTCTGCACCAATATAAACGATACCACGATCGTCTAAGTTCTTAAGTGCACTTTCAGAAACATTAGGAA > 2:926070/1‑151 GCATGTAACAATCTTTCTTCGGCAGTTAACTCAGTTACACCTTTAGGCGTTACTTTACCAACTAAAATATCTCCATCTTTTACTTCTGCACCAATATAAACGATACCACGATCGTCTAAGTTCTTAAGTGCACTTTCAGAAACATTAGGAA > 1:1044459/1‑151 ATCACAAGAGATATTCCTAATGTTTCTGAAAGTGCACTTAAGAACTTAGACGATCGTGGTATCGTTTATATTGGTGCAGAAGTAAAAGATGGAGATATTTTAGTTGGTAAAGTAACGCCTAAAGGTGTAACTGAGTTAACTGCCGAAGAAAGATTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/588518‑588673‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagattgCATGTAACAATCTTTCTTCGGCAGTTAACTCAGTTACACCTTTAGGCGTTACTTTACCAACTAAAATATCTCCATCTTTTACTTCTGCACCAATATAAACGATACCACGATCGTCTAAGTTCTTAAGTGCACTTTCAGAAACATTAGGAA < CP000730/588680‑588531 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |