Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	CP000730	661200	661313	114	2 [1]	[0] 2	USA300HOU_0602	hypothetical protein

CAGCTAAAATCAATTCTTTTTGGCCAGTGGCAGGAAGTACGGTCTTATTTGGTGTTATGTTAAGAAGGTATTCCCATTTATTTATCGTTAAATATGAATATAGTATAGTAATTTTAATTTGTTGCATCATAATACTAGGTATTTTTCTGTTTTTTTTATATTTAAATCAAAAGTTAAAGTTACAAATCTATAATGAAAACAAAA  >  CP000730/661049‑661252                                                                                                                                                       |                                                      cAGCTAAAATCAATTGTTTTTGGCCAGTGGCAGGAAGTACGGTCTTATTTGGTGTTATGTTAAGAAGTTATTCCCATTTATTTATCGTTAAATATGAATATAGTATAGTAATTTTAATTTGTTGCATCATAATACTAGGTATTTTTCTGtt                                                       >  1:980873/1‑151 (MQ=255)                                                      tttatgttaACAAGGTATTCCCATTTATTTATCGTTAAATATGAATATAGTATAGTAATTTTAATTTGTTGCATCATAATACTAGGTATTTTTCTGTTTTTTTTATATTTAAATCAAAAGTTAAAGTTACAAATCTATAATGAAAACaaaa  <  2:980873/150‑1 (MQ=255)                                                                                                                                                       |                                                      CAGCTAAAATCAATTCTTTTTGGCCAGTGGCAGGAAGTACGGTCTTATTTGGTGTTATGTTAAGAAGGTATTCCCATTTATTTATCGTTAAATATGAATATAGTATAGTAATTTTAATTTGTTGCATCATAATACTAGGTATTTTTCTGTTTTTTTTATATTTAAATCAAAAGTTAAAGTTACAAATCTATAATGAAAACAAAA  >  CP000730/661049‑661252

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑