Predicted mutation
evidence seq id position mutation annotation gene description
RA CP000730 2,002,518 T→C noncoding (896/1540 nt) rrs3 ← 16S ribosomal RNA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007302,002,5180TC83.2% 442.8 / 63.4 167noncoding (896/1540 nt)rrs316S ribosomal RNA
Reads supporting (aligned to +/- strand):  ref base T (15/13);  new base C (73/66);  total (88/79)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 169 total aligned reads displayed.

CACTTTGTCCCCCGAAGGGGAAAGCTCTATCTCTAGAGTTGTCAAAGGATGTCAAGATTTGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGTCCCCGTCAATTCCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGCGGAGTGCTTAATGCGTTAGCTGCAGCACTAAGGGGCGGAAACCCCCTAACACTTAGCACTCATCGTTTACGGCGTGGACTACCAGGGTATCTAATCCTGTTTGATCCCCACGCTTTCGCACATCAGCGTCA  >  CP000730/2002368‑2002663
                                                                                                                                                      |                                                                                                                                                 
cACTTTGTCCCCCGAAGGGGAAAGCTCTATCTCTAGAGTTGTCAAAGGATGTCAAGATTTGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGTCCCCGTCAATTCCTTTGAGTTTCAACCTTGCGGt                                                                                                                                                   <  2:125098/151‑1 (MQ=31)
   tttGTCCCCCGAAGGGGAAAGCTCTATCTCTAGAGTTGTCAAAGGATGTCAAGATTTGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGTCCCCGTCAATTCCTTTGAGTTTCAACCTTGCGGTCGt                                                                                                                                                <  2:1826/151‑1 (MQ=32)
     tGTCCCCCGAAGGGGAAAGCTCTATCTCTAGAGTTGTCAAAGGATGTCAAGATTTGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGTCCCCGTCAATTCCTTTGAGTTTCAACCTTGCGGTCGTAc                                                                                                                                              >  1:185547/1‑151 (MQ=32)
        cccccGAAGGGGAAAGCTCTATCTCTAGAGTTGTCAAAGGATGTCAAGATTTGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGTCCCCGTCAATTCCTTTGAGTTTCAACCTTGCGGTCGTACTcc                                                                                                                                           <  1:1001052/151‑1 (MQ=32)
         ccccGAAGGGGAAAGCTCTATCTCTAGAGTTGTCAAAGGATGTCAAGATTTGGTAAGGTTCTTCGCGTTTCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGTCCCCGTCAATTCCTTTGAGTTTCAACCTTGCGGTCGTACTccc                                                                                                                                          >  1:1059372/1‑151 (MQ=17)
         ccccGAAGGGGAAAGCTCTATCTCTAGAGTTGTCAAAGGATGTCAAGATTTGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGTCCCCGTCAATTCCTTTGAGTTTCAACCTTGCGGTCGTACTccc                                                                                                                                          >  1:987942/1‑151 (MQ=32)
         ccccGAAGGGGAAAGCTCTATCTCTAGAGTTGTCAAAGGATGTCAAGATTTGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGTCCCCGTCAATTCCTTTGAGTTTCAACCTTGCGGTCGTACTccc                                                                                                                                          >  2:592807/1‑151 (MQ=31)
          cccGAAGGGGAAAGCTCTATCTCTAGAGTTGTCAAAGGATGTCAAGATTTGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGTCCCCGTCAATTCCTTTGAGTTTCAACCTTGCGGTCGTACTcccc                                                                                                                                         <  2:517954/151‑1 (MQ=31)
          cccGAAGGGGAAAGCTCTATCTCTAGAGTTGTCAAAGGATGTCAAGATTTGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGTCCCCGTCAATTCCTTTGAGTTTCAACCTTGCGGTCGTACTcccc                                                                                                                                         >  2:801714/1‑151 (MQ=31)
               aGGGGAAAGCTCTATCTCTAGAGTTGTCAAAGGATGTCAAGATTTGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGTCCCCGTCAATTCCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGCg                                                                                                                                    <  1:323368/151‑1 (MQ=32)
                ggggAAAGCTCTATCTCTTGAGTTGTCAAAGGATGTCAAGATTTGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGTCCCCGTCAATTCCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGCgg                                                                                                                                   <  2:808497/151‑1 (MQ=14)
                 gggAAAGCTCTATCTCTAGAGTTGTCAAAGGATGTCAAGATTTGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGTCCCCGTCAATTCCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGCGGa                                                                                                                                  <  2:58758/151‑1 (MQ=32)
                 gggAAAGCTCTATCTCTAGAGTTGTCAAAGGATGTCAAGATTTGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGTCCCCGTCAATTCCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGCGGa                                                                                                                                  <  2:901860/151‑1 (MQ=31)
                  ggAAAGCTCTATCTCTAGAGTTGTCAAAGGATGTCAAGATTTGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGTCCCCGTCAATTCCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGCGGAg                                                                                                                                 <  1:859616/151‑1 (MQ=31)
                   gAAAGCTCTATCTCTAGAGTTGTCAAAGGATGTAAAGATTTGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGTCCCCGTCAATTCCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGCGGAGt                                                                                                                                >  1:220146/1‑151 (MQ=14)
                                ctgaaaacttccgtggatgtcaagaccaggTAAGGTTCTTCGCGTTGCATCGAATTAAACCACCTGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgtta                                                                                                                   <  2:868863‑M1/137‑17 (MQ=255)
                                ctgaaaacttccgtggatgtcaagaccaggTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgtta                                                                                                                   <  2:511253‑M1/137‑17 (MQ=255)
                                 tgaaaacttccgtggatgtcaagaccagGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttag                                                                                                                  >  1:1040706‑M1/14‑134 (MQ=255)
                                 gggaaagttctgtggatgtcaagaccagGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttag                                                                                                                  <  1:780649‑M1/138‑18 (MQ=255)
                                  gaaaacttccgtggatgtcaagaccaGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagc                                                                                                                 <  2:769574‑M1/139‑19 (MQ=255)
                                     aagttctgtggatgtcaagaCCAGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctcc                                                                                                              <  1:411218‑M1/142‑22 (MQ=255)
                                       gttctgtggatgtcaaGACCAGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccgg                                                                                                            >  1:657688‑M1/8‑128 (MQ=255)
                                        ttctgtggatgtcaAGACCAGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgtt                                                                                                                    >  2:527630‑M1/7‑127 (MQ=255)
                                        ttctgtggatgtcaAGACCAGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgtt                                                                                                                    <  1:527630‑M1/136‑16 (MQ=255)
                                          ccgtggatgtCAAGACCAGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaag                                                                                                         >  2:268042‑M1/5‑125 (MQ=255)
                                          aggtggatgtCAAGACCAGGTAAGGTTCTTCGCGCTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaag                                                                                                         >  2:148135‑M1/5‑125 (MQ=255)
                                            gtggatGTCAAGACCAGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCGCCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagcc                                                                                                       <  2:459995‑M1/149‑29 (MQ=255)
                                            gtggatGTCAAGACCAGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagcc                                                                                                       <  2:654624‑M1/149‑29 (MQ=255)
                                                 tgtcaagaccaggtaaggttcttcGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcc                                                                                                  <  1:409126‑M1/140‑34 (MQ=255)
                                                 tgtcaagaccaggtaaggttcttcGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcc                                                                                                  >  2:910751‑M1/12‑118 (MQ=255)
                                                  gtcaagaccaggtaaggttcttCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcct                                                                                                 >  2:561066‑M1/11‑117 (MQ=255)
                                                   tcaagaccaggtaaggttctTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctc                                                                                                >  2:843827‑M1/10‑116 (MQ=255)
                                                     aagaccaggtaaggttCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaa                                                                                              >  2:248664‑M1/8‑114 (MQ=255)
                                                     aagaccaggtaaggttCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagcgccggaagccacgcctcan                                                                                              <  2:130050‑M1/144‑38 (MQ=255)
                                                      agaccaggtaaggtTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaag                                                                                             >  1:75223‑M1/7‑113 (MQ=255)
                                                       gaccaggtaaggTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagg                                                                                            >  1:834836‑M1/6‑112 (MQ=255)
                                                         ccaggtaaGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggc                                                                                          <  1:583972‑M1/148‑42 (MQ=255)
                                                         ccaggtaaGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggc                                                                                          <  2:927636‑M1/148‑42 (MQ=255)
                                                          caggtaAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggca                                                                                         >  2:566835‑M1/3‑109 (MQ=255)
                                                          caggtaAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggca                                                                                         >  1:961046‑M1/3‑109 (MQ=255)
                                                           aggtAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcac                                                                                        <  1:1020166‑M1/150‑44 (MQ=255)
                                                            ggTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcaca                                                                                       >  2:646898‑M1/1‑107 (MQ=255)
                                                            ggTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcaca                                                                                       >  1:254492‑M1/1‑107 (MQ=255)
                                                            ggTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcaca                                                                                       <  1:191240‑M1/151‑45 (MQ=255)
                                                              tAAGGTTCTTCGCGTTGCATCGAATTAAACCACCTGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaac                                                                                     <  2:435889‑M1/151‑47 (MQ=255)
                                                                aGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacct                                                                                   >  1:783530‑M1/1‑103 (MQ=255)
                                                                 ggTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctc                                                                                  >  1:863243‑M1/1‑102 (MQ=255)
                                                                 ggTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctc                                                                                  <  1:660845‑M1/151‑50 (MQ=255)
                                                                 ggTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCAGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctc                                                                                  >  1:907909‑M1/1‑102 (MQ=255)
                                                                  gTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctcc                                                                                 >  2:731684‑M1/1‑101 (MQ=255)
                                                                  gTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctcc                                                                                 <  1:473157‑M1/151‑51 (MQ=255)
                                                                   ttcttcGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGccgacttaacgcgttagctccggaagccacgcctcaagggcacaacctcca                                                                                <  2:102080‑M1/151‑52 (MQ=255)
                                                                     cttcGCGTTTCATCGAATTAAACCACATGCTCCACCGCTTGTTCGGGCCCCCTTCAATTCATTTGAGTTGTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaag                                                                              <  1:951028‑M1/151‑54 (MQ=255)
                                                                     cttcGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaag                                                                              <  1:130310‑M1/151‑54 (MQ=255)
                                                                     cttcGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaag                                                                              >  1:340536‑M1/1‑98 (MQ=255)
                                                                       tcGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtc                                                                            <  1:1043927‑M1/151‑56 (MQ=255)
                                                                       tcGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtc                                                                            >  1:1033970‑M1/1‑96 (MQ=255)
                                                                       tcGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtc                                                                            <  1:24557‑M1/151‑56 (MQ=255)
                                                                                atcGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtcgacatcgtt                                                                   >  1:372291‑M1/2‑87 (MQ=255)
                                                                                atcGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtcgacatcgtt                                                                   <  1:216158‑M1/150‑65 (MQ=255)
                                                                                atcGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtcgacatcgtt                                                                   >  1:617368‑M1/2‑87 (MQ=255)
                                                                                 tCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtcgacatcgttt                                                                  >  2:526867‑M1/1‑86 (MQ=255)
                                                                                  cGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGgcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctcccagtcgacatcgttta                                                                 >  2:657651‑M1/1‑85 (MQ=255)
                                                                                   gAATTAGACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtcgacatcgtttac                                                                <  2:151816‑M1/151‑68 (MQ=255)
                                                                                   gAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtcgacatcgtttac                                                                >  2:708024‑M1/1‑84 (MQ=255)
                                                                                   gAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTAAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtcgacatcgtttac                                                                <  2:69844‑M1/151‑68 (MQ=255)
                                                                                      ttAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtcgacatcgtttacggc                                                             <  2:860292‑M1/151‑71 (MQ=255)
                                                                                       tAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtcgacatcgtttacggcg                                                            <  2:971005‑M1/151‑72 (MQ=255)
                                                                                       tAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGCtcgacttaacgcgtcagctccggaagccacgcctcaagggcacaacctccaagtcgacatcgtttacggcg                                                            >  2:699558‑M1/1‑80 (MQ=255)
                                                                                       tAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTCTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtcgacatcgtttacggcg                                                            >  2:784594‑M1/1‑80 (MQ=255)
                                                                                          aCCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtcgacatcgtttacggcgtgg                                                         >  1:740125‑M1/1‑77 (MQ=255)
                                                                                            cacaTGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTAGTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtcgacatcgtttacggcgtggac                                                       >  1:539262‑M1/1‑75 (MQ=255)
                                                                                            cacaTGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtcgacatcgtttacggcgtggac                                                       >  1:954830‑M1/1‑75 (MQ=255)
                                                                                             acaTGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtcgacatcgtttacggcgtggact                                                      >  2:543314‑M1/1‑74 (MQ=255)
                                                                                               aTGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtcgacatcgtttacggcgtggactac                                                    >  2:675060‑M1/1‑72 (MQ=255)
                                                                                                 gCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtcgacatcgtttacggcgtggactacca                                                  <  1:275111‑M1/151‑82 (MQ=255)
                                                                                                 gCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtcgacatcgtttacggcgtggactacca                                                  >  1:883778‑M1/1‑70 (MQ=255)
                                                                                                     cACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtcgacatcgtttacggcgtggactaccagggt                                              <  1:931441‑M1/151‑86 (MQ=255)
                                                                                                      aCCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtcgacatcgtttacggcgtggactaccagggta                                             <  2:730375‑M1/151‑87 (MQ=255)
                                                                                                        cGCTTGTGCGGGCCCCCGTCAATTCATGTGAGTTTTAACCTTGCGGCCGTACTCCGCCCGCGGtcgacttaacgcggtagctccggaagccacgcctcaagggcacaacctccaagtcgacatcgtttacggcgtggactaccagggtatc                                           <  1:1005463‑M1/151‑89 (MQ=255)
                                                                                                         gCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtcgacatcgtttacggcgtggactaccagggtatct                                          <  1:597621‑M1/151‑90 (MQ=255)
                                                                                                            tgtgCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtcgacatcgtttacggcgtggactaccagggtatctaat                                       >  2:349655‑M1/1‑59 (MQ=255)
                                                                                                              tgCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACCCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtcgacatcgtttacggcgtggactaccagggtatctaatcc                                     <  2:896753‑M1/151‑95 (MQ=255)
                                                                                                                  ggcccccgtcAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtcgacatcgtttacggcgtggactaccagggtatctaatcctgtt                                 <  2:380111‑M1/148‑99 (MQ=255)
                                                                                                                    cccccgTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtcgacatcgtttacggcgtggactaccagggtatctaatcctgtttg                               >  2:617799‑M1/2‑51 (MQ=255)
                                                                                                                    cccccgTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtcgacatcgtttacggcgtggactaccagggtatctaatcctgtttg                               <  2:610869‑M1/150‑101 (MQ=255)
                                                                                                                      cccGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtcgacatcgtttacggcgtggactaccagggtatctaatcctgtttgct                             >  1:503921‑M1/1‑49 (MQ=255)
                                                                                                                        cGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtcgacatcgtttacggcgtggactaccagggtatctaatcctgtttgctcc                           <  1:228198‑M1/151‑105 (MQ=255)
                                                                                                                          tCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtcgacatcgtttacggcgtggactaccagggtatctaatcctgtttgctcccc                         >  1:928785‑M1/1‑45 (MQ=255)
                                                                                                                           cAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtcgacatcgtttacggcgtggactaccagggtatctaatcctgtttgctcccca                        >  1:214135‑M1/1‑44 (MQ=255)
                                                                                                                                catttgaGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtcgacatcgtttacggcgtggactaccagggtatctaatcctgtttgctccccacgctt                   >  1:678734‑M1/3‑39 (MQ=255)
                                                                                                                                   ttGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtcgacatcgtttacggcgtggactaccagggtatctaatcctgtttgctccccacgctttcg                >  2:272693‑M1/1‑36 (MQ=255)
                                                                                                                                       gTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgtcttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtcgacatcgtttacggcgtggactaccagggtatctaatcctgtttgctccccacgctttcgcacc            >  2:755985‑M1/1‑32 (MQ=255)
                                                                                                                                       gTTTTAACCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtcgacatcgtttacggcgtggactaccagggtatctaatcctgtttgctccccacgctttcgcacc            >  1:174940‑M1/1‑32 (MQ=255)
                                                                                                                                        ttttaaccttGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtcgacatcgtttacggcgtggactaccagggtatctaatcctgtttgctccccacgctttcgcacct           <  1:274066‑M1/147‑121 (MQ=255)
                                                                                                                                             aCCTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtcgacatcgtttacggcgtggactaccagggtatctaatcctgtttgctccccacgctttcgcacctgagcg      <  1:492674‑M1/151‑126 (MQ=255)
                                                                                                                                              ccTTGCGGCCGTACTCCCCACGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtcgacatcgtttacggcgtggactaccagggtatctaatcctgtttgcgccccacgctttcgcacctgagcgt     >  2:87843‑M1/1‑25 (MQ=255)
                                                                                                                                               cTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtcgacatcgtttacggcgtggactaccagggtatctaatcctgtttgctccccacgctttcgcacctgagcgtc    <  2:357286‑M1/151‑128 (MQ=255)
                                                                                                                                               cTTGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtcgacatcgtttacggcgtggactaccagggtatctaatcctgtttgctccccacgctttcgcacctgagcgtc    <  1:716927‑M1/151‑128 (MQ=255)
                                                                                                                                                 tGCGGCCGTACTCCCCAGGCGGtcgacttaacgcgttagctccggaagccacgcctcaagggcacaacctccaagtcgacatcgtttacggcgtggactaccagggtatctaatcctgtttgctccccacgctttcgcacctgagcgtcag  <  2:847194‑M1/151‑130 (MQ=255)
                                                                                                                                                      |                                                                                                                                                 
CACTTTGTCCCCCGAAGGGGAAAGCTCTATCTCTAGAGTTGTCAAAGGATGTCAAGATTTGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGTCCCCGTCAATTCCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGCGGAGTGCTTAATGCGTTAGCTGCAGCACTAAGGGGCGGAAACCCCCTAACACTTAGCACTCATCGTTTACGGCGTGGACTACCAGGGTATCTAATCCTGTTTGATCCCCACGCTTTCGCACATCAGCGTCA  >  CP000730/2002368‑2002663

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑