New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2476453	47 (0.960)	3 (0.070)	3/236	NT	6.3%	intergenic (‑198/+42)	tcaA/tcaR	teicoplanin resistance protein TcaA/transcriptional regulator TcaR
	?	CP000730	= 2476476	46 (1.040)					intergenic (‑221/+19)	tcaA/tcaR	teicoplanin resistance protein TcaA/transcriptional regulator TcaR

CAAAAATTATTTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2476302‑2476453 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaggtgttcaaATATAAGACTAAATATGTATGTATTGAACACCTTCTTTTTAGTTATAATTGAGAGAGTACTTTCATAAATAATGTAATAAGGTACAATTCTAAAGTAAAGTTAATCATTTCTTGAATTGTATTCTTGGGATAATATTT  <  CP000730/2476476‑2476339                                                                                                                                                                                                                                                                                                    aAAAAATTATTACATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTCTACTTTAGAACTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAG                                                                                                                                                       <  2:455517/140‑1  AAAAATTATTTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTACGAAAGTACTCTCTCAATTATAACTAAAAAGA                                                                                                                                                      <  1:507232/141‑1     AATTATTTCATTATTTTACCATTATTATTTTATAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCGTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGG                                                                                                                                                   <  2:19000/141‑1                                            TATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTTTAACTAAAAAGAAGGTGTTCAAATATAAGACTAAATATGTATGTATTGAACACC                                                                                                            <  1:381478/141‑1                                                         CAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAAATATAAGACTAAATATATATGTATTGAACACCTTCTTTTAAGTTA                                                                                               >  2:54991/1‑141                                                                                                                                   TAACTAATAAGAAGGTGTTCAAATATAAGACTAAATATGTATGTATTGAACAGCTTTTTTTTAGTTATAATTGAGAGAGTACTTTCATAAATAATGTAATAAGGTACAATTCTAAAGTAAAGTTAATCATTTCTTGAATTG                     <  1:54991/141‑1                                                                                                                                                      CAAATATAAGACTAAATATGTATGTATTGAACACCTTCTTTTTAGTTATAATTGAGAGAGTACTTTCATAAATAATGTAATAAAGTACAATTCTCAAGTAAAGTTAATCATTTCTTGAATTGTATTCTTGGGATAATATTT  >  2:456050/1‑141                                                                                                                                                                                                                                                                                                    CAAAAATTATTTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2476302‑2476453 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaggtgttcaaATATAAGACTAAATATGTATGTATTGAACACCTTCTTTTTAGTTATAATTGAGAGAGTACTTTCATAAATAATGTAATAAGGTACAATTCTAAAGTAAAGTTAATCATTTCTTGAATTGTATTCTTGGGATAATATTT  <  CP000730/2476476‑2476339

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.