| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | CP000730 | 2,501,544 | Δ108 bp | 9.8% | coding (68‑175/2106 nt) | USA300HOU_2364 → | AraC transcriptional regulator |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 2501543 | 45 (0.700) | 5 (0.080) | 3/240 | NT | 9.8% | coding (67/2106 nt) | USA300HOU_2364 | AraC transcriptional regulator |
| ? | CP000730 | 2501652 = | 50 (0.840) | coding (176/2106 nt) | USA300HOU_2364 | AraC transcriptional regulator | |||||
TACTATCCATGATTTTAAAAATTTCCATGTTTTACATTTAAATGATAGATTTCAATATATATTAGGCAGGAGAGAGAAATATGACATGCCAACTTAAAATACATCATACATTATCGACAATACCAAGTCGTAATATTAATAATATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2501397‑2501543‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataatattaACCACGGCGAAAATATAATCGAATTAATGATACCCGTTTTTTATTTTTATCAACAAGATGATGATTTCTTTAATGGTTATTTAGATCGTCATTTATTACAATCAAGTAATTATATTAAGTCATTAATTGCCGATT > CP000730/2501652‑2501786 TACTATCCATGATTTTAAAAATTTCCATGTTTTACATTTAAATGATAGATTTCAATATATATTAGGCAGGAGAGAGAAATATGACATGCCAACTTAAAATACATCATACATTATCGACAATACCAAGTCGTAATATTAAT < 2:643049/140‑1 aaTATCCAAGATTTTAATAATTTCGAGGTTTTACATTTAAATGATAGATTTCAATATATATTAGGCAGGAGAGAGAAATATGACATGCCAACTTAAAATACATCATACATTATCGACAATACCAAGTCGTAATATTAATA < 1:706216/138‑1 ACTATCCATGATTTTAAAAATTTCCATGTTTTACATTTAAATGATAGATTTCAATATATATTAGGCAGGAGAGAGAAATATGACATGCCAACTTAAAATACATCATACATTATCGACAATACCAAGTCGTAATATTAATA < 1:619385/140‑1 ATCCATGATTTTAAAAATTCTCTAGTTCTACATTTAAATGATAGATTTCAATATATATTAGGCAGGAGAGAGAAATATGACATGCCAACTTAAAATACATCATACATTATCGACAATACCAAGTCGTAATATTAATAATA < 1:734485/140‑1 TCCATGATTTTAAAATTTTCCATGTTTTACATTTAAATGATAGATTTCAATATATATTAGGCAGGAGAGAGAAATATGACATGCCAACTTAAAATACATCATACATTATCGACAATACCAAGTCGTAATATTAATAATAT > 1:383107/1‑140 TCCATGATTTTAAAAATTTCCATGTTTTACATTTAAATGATGGCTTTCGAAGGATATTAGGCAGGAGAGAGAAATATGACATGCCAACTTAAAATACATCATACATTATCGACAATACCAAGTCGTAATATTAATAATAT > 1:593578/1‑140 TCCATGATTTTAAAAATTTCCATGTTTTACATTTAAATGATAGATTTCAATATATATTAGGCAGGAGAGAGAAATATGACATGCCAACTTAAAATACATCATACATTATCGACAATACCAAGTCGTAATATTAATAATAT > 1:99695/1‑140 AAAATTTCCATGTTTTACATTTAAATGATAGATTTCAATATATATTAGGCAGGGGAGAGAAATATGACATGCCAACTTAAAATACATCATACATTATCGACAATACCAAGTGGTAATATTAATAATATTAACCACAGCaa > 2:379239/1‑138 ACATGCCAACTTAAAATACATCATACATTATCGACAATACCAAGTCGTAATATTAATAATATTAACCACGGCGAAAATATAATCGAATTAATGAAAACCGTTTTTTATTTTTATCAACAAGATGATGATTTCTTTAATGG > 1:317044/1‑140 gctAACTTAAAATACATCATACATTATCGACAATACCAAGTCGTAATATTAATAATATTAACCACGGCGAAAATATAATCGAATTAATGATACCCGTTTTTTATTTTTATCAACAAGATGATGATTTCTTTAATTGTTAT < 2:383107/137‑1 actAACTTAATATACAACATACATTAGCTACAAGACCAAGTCGTAATATTAATAATATTAACCACGGCGAAAATATAATCGAATTAATGATACCCGTTTTTTATTTTTATCAACAAGATGATGATTTCTTTAATGGTTAT < 2:593578/137‑1 GCCAACTTAAAATACATCATACATTATCGACAATACCAAGTCGTAATATTAATAATATTAACCACGGCGAAAATATAATCGAATTAATGATACCCGTTTTTTATTTTTATCAACAAGATGATGATTTCTTTAATGGTTAT < 2:99695/140‑1 TAATATTAACCACGGCGAAAATATAATCGAATTAATGATACCCGTTTTTTATTTTTATTAACAAGATGATGATTTCTTTAATTGTTATTTAGATCGTCATTTATTACAATCAATTAATTATATGAATTCATTAATTGCCa > 2:75380/1‑139 TAATATTAACCACGGCGAAAATATAATCGAATTAATGATACCCGTTTTTTATTTTTATCAACAAGATGATGATTTCTTTAATTGTTATTTAGATCGTCATTTATTACAATCAAGTAATTATATTAAGTCATTAATTGCCt > 2:485232/1‑139 TATTAACCACGGCTAATATATAATCGAATTAATGTTACCCGTTTTTTATTTTTATCAACAAGATGATGATTTCTTTAATGGTTATTTAGATCGTCATTTATTACAATCAAGTAATTATATTAAGTCATTAATTGCCGATT < 2:434256/140‑1 TACTATCCATGATTTTAAAAATTTCCATGTTTTACATTTAAATGATAGATTTCAATATATATTAGGCAGGAGAGAGAAATATGACATGCCAACTTAAAATACATCATACATTATCGACAATACCAAGTCGTAATATTAATAATATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2501397‑2501543‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataatattaACCACGGCGAAAATATAATCGAATTAATGATACCCGTTTTTTATTTTTATCAACAAGATGATGATTTCTTTAATGGTTATTTAGATCGTCATTTATTACAATCAAGTAATTATATTAAGTCATTAATTGCCGATT > CP000730/2501652‑2501786 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |