Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 396,540 G→A 100% A208T (GCA→ACA)  USA300HOU_0364 → possible lipoprotein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP000730396,5400GA100.0% 243.9 / NA 83A208T (GCA→ACA) USA300HOU_0364possible lipoprotein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (46/37);  total (46/37)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

AGATATCATACCAAAATTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCGCACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAATTATTGGATAAATATAAAGATAACAACGGCGGTTATGAGTC  >  CP000730/396407‑396676
                                                                                                                                     |                                                                                                                                        
aGATATCATACCAAAATTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACaaa                                                                                                                                    <  1:106941/140‑1 (MQ=255)
  atatCATACCAAAATTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACaaaaa                                                                                                                                  <  1:474571/140‑1 (MQ=255)
    atCATACCAAAATTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAAt                                                                                                                                >  1:544889/1‑140 (MQ=255)
     tCATACCAAAATTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAAtt                                                                                                                               >  2:697763/1‑140 (MQ=255)
      cATACCAAAATTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTAAAGGCACACAAAAAAttt                                                                                                                              >  1:163637/1‑140 (MQ=255)
        tACCAAAATTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTAt                                                                                                                            >  1:202110/1‑140 (MQ=255)
        tACCAAAATTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCAAAAGACAAATTTAt                                                                                                                            >  1:239950/1‑140 (MQ=255)
         aCCAAAATTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATAAAGATTTATATGATTTTAAAGCGAACGTTGAAGGCAAACAAAAAATTTATg                                                                                                                           >  2:728693/1‑140 (MQ=255)
          ccAAAATTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGa                                                                                                                          >  1:51463/1‑140 (MQ=255)
          ccAAAATTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGa                                                                                                                          >  2:707798/1‑140 (MQ=255)
           ccaaaTGAATGTTAAACGGTTCTGTTGACCTATTAAATGAAGTTGCATCTTCTAAAATCACAAGTGAAGAAGAAATTTATTCACATTCAGATTTATATGATGTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGAc                                                                                                                         <  1:191064/138‑1 (MQ=255)
            aaaaTTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACt                                                                                                                        <  1:700727/140‑1 (MQ=255)
              aaTTAATGTTACAAAGTTCTGTTGACCTATTAAATGAAGTTGGAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTCGAAGGCACACAAAAAATTTATGACTTa                                                                                                                      >  2:517245/1‑140 (MQ=255)
               aTTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTAt                                                                                                                     >  1:278194/1‑140 (MQ=255)
                 tgaTGTGACAAAGTTAAGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATGACAGCTGAAGAAGAAATCTATTCACATACAGATTTATATGATTTTAAATCGAACGTTAAAAAAAAACAAAAAATTTATGACTTAttt                                                                                                                   <  2:643673/138‑1 (MQ=255)
                  aaTGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTAATCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTa                                                                                                                  >  1:405418/1‑140 (MQ=255)
                   aTGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTaaa                                                                                                                 >  2:453032/1‑140 (MQ=255)
                    tGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTaaa                                                                                                                >  1:575509/1‑140 (MQ=255)
                     gTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAAc                                                                                                               >  2:156024/1‑140 (MQ=255)
                     gTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAAc                                                                                                               >  1:601051/1‑140 (MQ=255)
                      ttACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAAcc                                                                                                              <  1:182205/140‑1 (MQ=255)
                              ttCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTag                                                                                                      >  1:344751/1‑140 (MQ=255)
                              ttCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTag                                                                                                      >  2:587370/1‑140 (MQ=255)
                                 tGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGGGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACCCAAAAAATTTATGACTTATTTAAACCTATTTTGgaga                                                                                                   >  2:413734/1‑140 (MQ=255)
                                    tGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGaaaa                                                                                                >  1:594281/1‑140 (MQ=255)
                                      aCCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGaaaaaa                                                                                              <  1:127253/140‑1 (MQ=255)
                                         tATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAAAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGAt                                                                                           <  2:200006/140‑1 (MQ=255)
                                           ttAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATaa                                                                                         >  2:664000/1‑140 (MQ=255)
                                            tAAATGAAGTTGCAACTTCTAAAATCACTGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGAt                                                                                           >  1:481199/1‑137 (MQ=255)
                                            tAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGAt                                                                                           <  2:481199/137‑1 (MQ=255)
                                              aaTGAAGTTGCAACTTCTAAAGTCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGAAACCACAAAATGTGTGGCTTTTTTAAACCTATTTTAGAGAAAAAAGATaaaaa                                                                                      >  2:533685/1‑140 (MQ=255)
                                              aaTGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATaaaaa                                                                                      <  1:584362/140‑1 (MQ=255)
                                              aaTGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAAATaaaaa                                                                                      >  1:188684/1‑140 (MQ=255)
                                              aaTGAAGTTGCAACTACTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAACGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAAATaaaaa                                                                                      >  2:397957/1‑140 (MQ=255)
                                               aTGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATaaaaaa                                                                                     <  1:369944/140‑1 (MQ=255)
                                                ttaaGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTATAGCTAACTTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAAt                                                                                    <  1:555944/138‑1 (MQ=255)
                                                tGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTCTTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGTCACACAAAAATTTTTTGACTTATTAAAACCTATTTTAGAGAAaaaaaataaaaaat                                                                                    >  1:277040/1‑140 (MQ=255)
                                                tGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAACGATAAAAAAt                                                                                    >  1:408443/1‑140 (MQ=255)
                                                  aaGTTGCAACTTGTAAAATCACAGGTGAAGAACAAATTTATAACAACACAAATACATAGGATTTTAAAGAGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGAAAGAACATTa                                                                                  >  2:346620/1‑140 (MQ=255)
                                                        cAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGAGTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTCAACCTATTTTAGATAAAAAAGATAAAAAACTAAGtgat                                                                            <  1:488723/140‑1 (MQ=255)
                                                        cAACTTATAAAATCATAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACTTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGtgat                                                                            <  1:65378/140‑1 (MQ=255)
                                                         aaCTTCTAAAATCACAGGTGAAGAAGAAATTTATTCAAATACGGATTTATATGATTTTAAAGCAAACGTTGAAGGCACACAAAAAATTCCTGACTTAATTAAACCTATTTTGAAGAAAAAAAATAAAAAAAAAAGtgata                                                                           >  2:60206/1‑139 (MQ=255)
                                                          aCTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGtgatga                                                                          >  2:183361/1‑140 (MQ=255)
                                                            ttCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAATGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGata                                                                        <  1:325570/140‑1 (MQ=255)
                                                            ttCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGata                                                                        <  1:642799/140‑1 (MQ=255)
                                                            tgcataaaTTACAGGTGAAAAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAATGTTAAATGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGata                                                                        <  2:645250/135‑1 (MQ=255)
                                                             tCTAAAATCACAAGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGatat                                                                       <  2:82355/140‑1 (MQ=255)
                                                                 aaaTCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATAAAGTGATGATATCCaa                                                                   >  2:637597/1‑140 (MQ=255)
                                                                   aTCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAAt                                                                 <  2:753270/140‑1 (MQ=255)
                                                                    tCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATg                                                                <  2:132645/140‑1 (MQ=255)
                                                                    acataGGTGAAGAAGAAATTTATTCACAAACAGATTTATATGACTTTAAAGCGCACGTAGAAAACACACAAAAAATTTATGACTTATTTAAAACAAAATAAAAAAAAAAAGATAAAAAATTAAGTGATGATATCCAAATg                                                                <  2:701062/136‑1 (MQ=255)
                                                                          gTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTc                                                          >  2:233803/1‑140 (MQ=255)
                                                                              agcagagATTTATTCACATACATATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAATAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATa                                                      <  2:410964/137‑1 (MQ=255)
                                                                              agaagaaATTTATTCACATACATATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATa                                                      <  2:592584/140‑1 (MQ=255)
                                                                              agaagaaATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAACAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGCTATCCAAATGAACTTCGATa                                                      >  1:575420/1‑140 (MQ=255)
                                                                                aagaaATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATaaa                                                    >  2:490796/1‑140 (MQ=255)
                                                                                  gaaATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGt                                                  <  2:363339/140‑1 (MQ=255)
                                                                                   aaaTTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTCTGACTTATTTAAACCTATTTAAGAGAAAAAAGATCCAAAATTAAGTGATGATATACAAATGAACTTCGATAAAGTg                                                 >  2:205230/1‑140 (MQ=255)
                                                                                    aaTTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACTAAAATAAAATATGTCCTATTTAAACCGATGTTTGAGATAAAATATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGa                                                <  1:149993/140‑1 (MQ=255)
                                                                                         aTTTACATACAGATTTATATGATTTTAAAGCGAACGTTTAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCaa                                           >  2:368086/1‑140 (MQ=255)
                                                                                         aTTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAACTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCaa                                           >  1:671158/1‑140 (MQ=255)
                                                                                          gtCACATACAGATTTATATGATTTTAAATCGAACGTTGAAGGTACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAat                                          <  2:470568/139‑1 (MQ=255)
                                                                                                tACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACAC‑AAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAATTATTGGa                                   <  1:97823/140‑1 (MQ=255)
                                                                                                 aCAGATTTATATTATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATTACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAATTATTGGa                                   <  1:639402/140‑1 (MQ=255)
                                                                                                 aCAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAATTATTGGa                                   <  2:581125/140‑1 (MQ=255)
                                                                                                  cAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAATTATTGGAt                                  <  1:274219/140‑1 (MQ=255)
                                                                                                  cAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGAGAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTTAATCAATTATTGGAt                                  <  2:278194/140‑1 (MQ=255)
                                                                                                   aGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAATTATTGGATa                                 <  1:125484/140‑1 (MQ=255)
                                                                                                   aGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAATTATTGGATa                                 <  1:250962/140‑1 (MQ=255)
                                                                                                    gATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAATTATTGGATaa                                >  2:752354/1‑140 (MQ=255)
                                                                                                        tataTGATTTTAAAGCGAACGTTGAAGGCACAAAAAAAATTTATGACTTATTTAAAACTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAATTATTGGATAAatat                            <  2:404119/140‑1 (MQ=255)
                                                                                                          tatGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAATGAGGCAATTATTAGATAAATATaa                          >  1:511351/1‑140 (MQ=255)
                                                                                                             gATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAATTATTGGATAAATATAAAGa                       <  2:615890/140‑1 (MQ=255)
                                                                                                             gATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAATTATTGGATAAATATAAAGa                       <  1:574819/140‑1 (MQ=255)
                                                                                                              aTTTTAAAGAGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTGTAGAGAAAAAAGATAACAAATTAAGTGATGATATACAAATGAACTTCGATAAAATGAATCACTTATTGGATaaaaaaacacac                      >  2:664350/1‑131 (MQ=255)
                                                                                                                      gCGAGCGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAATTATTGGATAAATATAAAGATAACAAcgg              >  2:526416/1‑140 (MQ=255)
                                                                                                                      gCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGCTAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAATTATTGGATAAATATAAAGATAACAAcgg              >  1:214500/1‑140 (MQ=255)
                                                                                                                      gCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAGTTATCATATAAATATAAAGATAACAAcgg              >  1:203738/1‑140 (MQ=255)
                                                                                                                      gCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATAAATTATTGGATAAATATAAAGATAAAAAcgg              >  2:136244/1‑140 (MQ=255)
                                                                                                                            gTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAATTATTGGATAAATATAAAGATAACAACGGCGGTTa        >  1:653063/1‑140 (MQ=255)
                                                                                                                            gTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAATTATTGGATAAATATAAAGATAACAACGGCGGTTa        >  1:582988/1‑140 (MQ=255)
                                                                                                                              tGAAGGCACACAAAAAATTTATGACTTATTTAAACCTTTTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCAAAATGAACTTCTATAAAGTGAAGAAATTATTGGATAAATATAAAGATAACAACGGCGGTTATg      >  1:201851/1‑140 (MQ=255)
                                                                                                                                  ggCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAATTATTGGATAAATATAAAGATAACAACGGCGGTTATGAGTc  <  1:269122/140‑1 (MQ=255)
                                                                                                                                     |                                                                                                                                        
AGATATCATACCAAAATTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCGCACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATCAATTATTGGATAAATATAAAGATAACAACGGCGGTTATGAGTC  >  CP000730/396407‑396676

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑