Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP00073076,1800CT58.5% 70.9 / 126.1 124intergenic (+238/‑896)USA300HOU_0072/USA300HOU_0075universal stress protein/lysophospholipase
Reads supporting (aligned to +/- strand):  ref base C (29/20);  new base T (35/34);  total (66/58)
Fisher's exact test for biased strand distribution p-value = 4.54e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.55e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 124 total aligned reads displayed.

TAATGAATTTAATATAACTAATATTGCTGCACCTGTATCACTTAGAACAGCTAACCAAAGTGTTAGTAATCCAGGGAATACTAACACAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATAT  >  CP000730/76037‑76317
                                                                                                                                               |                                                                                                                                         
   tGAATTTAATATAACTAATATTGCTGCACCTGTATCACTTAGAACAGCTAACCAAAGTGTTAGTAATCCAGGGAATACTAACACAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTGGCAAAGTTGAATCTATAgaa                                                                                                                                    >  2:250765/1‑146 (MQ=255)
           atatAACTAATATTGCTGCACCTGTATCACTTAGAACAGCTAACCAAAGTGTTAGTAATCCAGGGAATACTAACACAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTa                                                                                                                            >  1:204780/1‑148 (MQ=255)
           atacAACTAAGACTGCTGCACCTGTATCACTTAGAACAGCTAACCAAAGTGTTAGTAATCCAGGGAATACTAACACAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTa                                                                                                                            <  2:407324/148‑1 (MQ=255)
            tataACTAATATTGCTGCACCTGTATCACTTAGAACAGCTAACCAAAGTGTTAGTAATCCAGGGAATACTAACACAAAGGCAATTAATTTAATAATTATAGCAAAAGATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTaa                                                                                                                           >  1:600849/1‑148 (MQ=255)
                      atTGCTGCACCTGTATCACTTAGAACAGCTAACCAAAGTGTTAGTAATCCAGGGAATACTAACACAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAg                                                                                                                 >  2:531902/1‑148 (MQ=255)
                       ttGCTGCACCTGTATCACTTAGAACAGCTAACCAAAGTGTTAGTAATCCAGGGAATACTAACACAAAGGCAATTAATTTAATGATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAATGAGt                                                                                                                >  1:346659/1‑148 (MQ=255)
                          ctgcACCTGTATCACTTAGAACAGCTAACCAAAGTGTTAGTAATCCAGGGAATACTAACACAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGtctt                                                                                                             >  2:489098/1‑148 (MQ=255)
                          ctgcACCTGTATCACTTAGAACAGCTAACCAAAGTGTTAGTAATCCAGGGAATACTAACACAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGtcat                                                                                                             >  2:82731/1‑146 (MQ=255)
                                      cACTTAGAACAGCTAACCAAAGTGTTAGTAATCCAGGGAATACTAACACAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTGGAATCTATAGTATAATTTTAACTAAAAGGAGTCTTCTCTATGAACTa                                                                                                 >  2:500695/1‑148 (MQ=255)
                                           acaaCAGCGAACCAAAGTGTTAGTAACCCAGGGAATACTAACACAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCa                                                                                            <  1:266550/146‑1 (MQ=255)
                                           aGAACAGCTAACCAAAGTGTTAGTAATCCAGGTAATACTAACACAAAGGCAATTCATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTAGAATCTATAGTATAATTTTAACAGAAAGGAGTCTTCTGTATGAACTATTTCa                                                                                            <  2:345321/148‑1 (MQ=255)
                                             aaCAGCTAACCAAAGTGTTAGTAATCCAGGGAATACTAACACAAAGGCAATTAATTTAATAATTATATCAAAATATAGGTTCTGTTGCAAAGTTGAATGTATCGTATAATTTTAACAAAAAGGAGTGTTCTGTATGAACTATTTCAGa                                                                                          >  1:189881/1‑148 (MQ=255)
                                             aaCAGCTAACCAAAGTGTTAGTAATCCAGGGAATACTAACACAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGa                                                                                          >  1:546900/1‑148 (MQ=255)
                                                      ccAAAGTGTTAGTAATCCAGGGAATACTAACACAAAGGCAATTAATTTAATAATTATAGCAAAATAAAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACaa                                                                                 >  2:173214/1‑148 (MQ=255)
                                                             gtTAGTAATCCAGGGAATACTAACACAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACa                                                                          >  1:292196/1‑148 (MQ=255)
                                                                 gTAATCCAGGGAATACTAACACAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGa                                                                      >  1:297128/1‑148 (MQ=255)
                                                                  tAATCCAGGGAATACTAACACAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAATGGGTCTTCTGTATGAACTATTTCAGATATAAAAATTTTAAAAAGGAt                                                                     >  1:8553/1‑148 (MQ=25)
                                                                     tCCAGGGAATACTACCACAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGAGATAAACAATTTAACAAGGATGtt                                                                  >  2:449069/1‑148 (MQ=255)
                                                                     tCCAGGGAATACTAACACAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTCGCAAAGTTGAATCTATAGTCTAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGTTATAAACAATTTAACAAGGATGtt                                                                  >  2:189054/1‑148 (MQ=255)
                                                                      ccAGGGAATACTAACACAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAAGAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTa                                                                 >  2:414190/1‑148 (MQ=255)
                                                                       cAGGGAATACTAACACAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGGCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTAt                                                                >  1:558953/1‑148 (MQ=255)
                                                                        aGGGACTAATAACACAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACTATTTAACAAGGATGTTATc                                                               <  2:220509/148‑1 (MQ=255)
                                                                                  aaCACAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCg                                                     >  1:88741/1‑148 (MQ=255)
                                                                                  aaCACAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTATGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCg                                                     >  2:512892/1‑148 (MQ=255)
                                                                                   aaacaAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGCCTTCTGTATGAACTATTTCAGATATAAACAATTCAACCAGGATGTTATCACTGTAGCCGt                                                    <  2:287109/146‑1 (MQ=255)
                                                                                     acaAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTATTTTGCAAAGTTGAATATCTAGTATAATTTTAACAAAAAGGAGACTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCAATGTAGCTGttt                                                  >  1:527219/1‑147 (MQ=18)
                                                                                      caAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTgg                                                 >  1:232796/1‑148 (MQ=255)
                                                                                         gggCAATTAATTTAATAATTATAGCAAAAGAAAGCTTTTGCTGCAAAGTTGAATCCATAGTAAAAAAAAAAAAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGcta                                              <  2:298505/147‑1 (MQ=17)
                                                                                           gCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAAATAGAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGctact                                            >  1:588640/1‑148 (MQ=255)
                                                                                             aattaattTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTAt                                          >  2:353589/1‑148 (MQ=255)
                                                                                              attaattTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATc                                         <  2:495830/148‑1 (MQ=255)
                                                                                               ttaatttaatAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCt                                        <  1:373050/148‑1 (MQ=255)
                                                                                                    ttaatAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGat                                   <  1:311202/148‑1 (MQ=255)
                                                                                                    ttaatAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTAGAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGat                                   <  2:88110/148‑1 (MQ=255)
                                                                                                           gtaatacagttaggaGGTTCTGTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAAATATGCAtt                            >  1:109496/15‑148 (MQ=1)
                                                                                                           ccatatagtaaatgaGGTTCTGTTGCAAAGTTGAATTTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCTGAGCTAAACGATTTCACACTGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCAtt                            <  1:148196/134‑1 (MQ=11)
                                                                                                           ccatatagtaaatgaGGTTCTGTTGCAAAGTTGAATTTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTATTTTGAATTTTATCACTGTAGCTGTTGGCTATTATCTAAGATATGCAtt                            <  1:461181/134‑1 (MQ=11)
                                                                                                            catatagtaaatgaGGTTCTGTTGCAAAGTTGAATTTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACGATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTg                           <  2:406802/135‑1 (MQ=11)
                                                                                                            catatagtaaatgaGGTTCTGTTGCAAAGTTGAATTTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTg                           <  1:320592/135‑1 (MQ=11)
                                                                                                            catatagtaaatgaGGTTCTGTTGCAAAGTTGAATTTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTg                           >  2:72562/14‑148 (MQ=1)
                                                                                                            catatagtaaatgaGGTTCTGTTGCAAAGTTGAATTTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTg                           >  1:604275/14‑148 (MQ=1)
                                                                                                            catatagtaaatgaGGTTCTGTTGCAAAGTTGAATTGATAGTAAAAAAATAAAAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTg                           <  2:248625/135‑1 (MQ=11)
                                                                                                             atatagtaaatgaGGTTCTGTTGCAAAGTTGAATTTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTgc                          >  1:233692/13‑147 (MQ=1)
                                                                                                             ataGCAAAATATAGGTTCTGTGGAAAAGTTGAATTGATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATTAACTATTTCAGATCTAAACAATTTAACAAGGATGTTATCACGGTAGCCGTTGGCTACTATCTAAGATATGCATTGa                          <  2:281235/148‑1 (MQ=14)
                                                                                                             aatacagttaggaGGTTCTGTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGa                          <  1:373849/136‑1 (MQ=11)
                                                                                                              taGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAg                         >  2:486492/1‑148 (MQ=255)
                                                                                                              atacagttaggaGGTTCTGTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAg                         <  2:519892/137‑1 (MQ=11)
                                                                                                               taaagttaggaGGTTCTGTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAgc                        <  2:587524/138‑2 (MQ=11)
                                                                                                               atagtaaatgaGGTTCTGTTGCAAAGTTGAATTTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGt                        >  2:92990/11‑148 (MQ=1)
                                                                                                               aGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATACATTGAGt                        >  1:1111/1‑148 (MQ=255)
                                                                                                                 cagttaggaGGTTCTGTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAgcta                      >  2:536577/9‑145 (MQ=11)
                                                                                                                 agtaaatgaGGTTCTGTTGCAAAGTTGAATTTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTa                      >  1:110736/9‑148 (MQ=1)
                                                                                                                 agtaaaagaGGTTCTGTTGCAAAGTTGAATTTATAGTATAATTTTAACAAAAAGGAGTCTTCAGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCCAAGATATGAATTGCGTTa                      >  2:598182/9‑148 (MQ=11)
                                                                                                                  gtaaatgaGGTTCTGTTGCAAAGATGAATTTATCGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTAt                     >  1:315779/8‑148 (MQ=11)
                                                                                                                  agttaggaGGTTCTGTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTAt                     <  1:282218/141‑1 (MQ=11)
                                                                                                                  agttaggaGGTTCTGTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATAAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTAt                     >  1:461822/8‑148 (MQ=11)
                                                                                                                   taaatgaGGTTCTGTTGCAAAGTTGAATTTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATc                    >  1:211322/7‑148 (MQ=2)
                                                                                                                   taaatgaGGTTCTGTTGCAAAGTTGAATTTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGGAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATc                    >  1:168178/7‑148 (MQ=11)
                                                                                                                   gttaggaGGTTCTGTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATc                    >  1:194849/7‑148 (MQ=1)
                                                                                                                    ttaggaGGTTCTGTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCg                   <  1:140927/143‑1 (MQ=11)
                                                                                                                    ttaggaGGTTCTGTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCg                   >  2:536544/6‑148 (MQ=11)
                                                                                                                    ttaggaGGTTCTGTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCg                   >  2:299871/6‑148 (MQ=1)
                                                                                                                    aaaggaGGTTCTGTTGCAAAGTTGAATTTATAGTATAATCTGAAGAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCg                   <  1:270575/143‑1 (MQ=11)
                                                                                                                     taggaGGTTCTGTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGt                  <  1:90533/144‑1 (MQ=255)
                                                                                                                     taggaGGTTCTGTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGt                  <  1:257502/144‑1 (MQ=11)
                                                                                                                     taggaGGTTCTGTTGCAAAGTTGAATTTATAATATAATTATAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGt                  <  1:513969/144‑1 (MQ=11)
                                                                                                                     tagaaGGTTCTATAGCAAACTTGAATTAATAATATTACTTTAACAAAAAGGAGTCCTCTGTATGCACTATTTCAGTTTTAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGAGATGCATTGAGCTATCGt                  <  2:342486/144‑1 (MQ=11)
                                                                                                                      tataGTGTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTg                 <  2:451648/148‑1 (MQ=255)
                                                                                                                      tataGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATCGAGTTATCGTg                 >  2:127186/1‑148 (MQ=38)
                                                                                                                      gagaGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTg                 <  2:359270/145‑1 (MQ=25)
                                                                                                                      atgaGGTTCTGTTGCAAAGTTGAATTTATAGTATAATTTTAGCGGCTAGGAAACTAATGTCTTTTCTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTTAGTTATCGTg                 >  1:622677/4‑148 (MQ=1)
                                                                                                                      atgaGGTTCTGTTGCAAAGTTGAATTTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTg                 >  2:164348/4‑148 (MQ=9)
                                                                                                                      atgaGGTTCTGTTGCAAAGTTGAATTTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTg                 >  2:50343/4‑148 (MQ=0)
                                                                                                                      atgaGGTTCCGTTGCAAAGTTCAATTTATCGTATACTTTTACCAAAAAGGAATCTTCAGTATAAACTATTTCAGATATAAACAATTTAACCAGGCTGTTATCACTGTAGCTGTTGGCTACTAGCTAAGATAGGCATCGGGTTATCGTg                 >  2:164061/4‑148 (MQ=11)
                                                                                                                      aggaGGTTCTGTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTg                 <  1:288413/145‑1 (MQ=255)
                                                                                                                       tgaGGTTCTGTTGCAAAGTTGAATTTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGa                <  1:228437/146‑1 (MQ=2)
                                                                                                                       tgaGGTTCTGTTGCAAAGTTGAATTTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGa                <  1:38700/146‑1 (MQ=9)
                                                                                                                       ggaGGTTCTGTGGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGa                >  1:453442/3‑148 (MQ=1)
                                                                                                                       ggaGGCTCTGTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTTGATACTAACCAGGATAAGCGTTGAGCTAttctaa                >  1:485452/3‑143 (MQ=1)
                                                                                                                       ataGGTTCTGTTGCAACGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAATAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGa                <  2:422496/148‑1 (MQ=255)
                                                                                                                        gaGGTTCTGTTGCAAAGTTGAATTTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGGGTTATCGTgtt               >  2:239124/2‑146 (MQ=0)
                                                                                                                        gaGGTTCTGTTGCAAAGTTGAATTTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGat               <  1:474948/147‑1 (MQ=9)
                                                                                                                        gaGGTTCTGTTGCAAAGTTGAATTTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGat               >  2:595518/2‑148 (MQ=2)
                                                                                                                        gaGGTTCTGTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGat               <  2:164443/147‑1 (MQ=9)
                                                                                                                        gaGGTTCTGTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGat               <  2:565990/147‑1 (MQ=0)
                                                                                                                        gaGGTTCTGTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGat               <  1:264386/147‑1 (MQ=9)
                                                                                                                         aGGTTCTGTTGCAAAGTTGAATTTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGata              >  2:515022/1‑148 (MQ=1)
                                                                                                                         aGGTTCTGTTGCAAAGTTGAATTTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGata              >  2:257498/1‑148 (MQ=1)
                                                                                                                         aGGTTCTGTTGCAAAGTTGAATTTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGata              >  2:434481/1‑148 (MQ=0)
                                                                                                                         aGGTTCTGTTGCAAAGTTGAATTTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCAAAGATATGAATGGAGTTATCGTGata              >  2:202759/1‑148 (MQ=11)
                                                                                                                         aGGTTCTGTTGCAAAGTTGAATTTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGata              >  1:531064/1‑148 (MQ=0)
                                                                                                                         aGGTTCTGTTGCAAAGTTGAATTTATAATAAAAAAATAAAAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGata              <  2:166921/148‑1 (MQ=11)
                                                                                                                         aGGTTCTGTTGCAAAGTTGAATCTATAGAATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTCAGATATGCATTGAGTTATCGTGata              >  1:382596/1‑148 (MQ=25)
                                                                                                                          ggTTCTGTTGCAAAGTTAGCAAAATTATTTAAGTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGatat             <  2:439680/148‑1 (MQ=11)
                                                                                                                             tCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATc          >  2:250365/1‑148 (MQ=35)
                                                                                                                               tGTTGCAAAGTTGAAGCTATATTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTg        <  1:320248/148‑1 (MQ=25)
                                                                                                                                 ttGCAAAGTTGAATGTATAATATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGaa      <  1:486855/148‑1 (MQ=12)
                                                                                                                                 ttGCAAACTTGAATGTAAAGAAAAAAAAAAAAAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGaa      <  2:555112/148‑1 (MQ=11)
                                                                                                                                  tGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGaaa     <  1:410826/148‑1 (MQ=35)
                                                                                                                                     aaatgtGAATGTATAATAAAATAATAAAAAATAGGAGTATCTTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGCAatat  <  2:441989/143‑1 (MQ=11)
                                                                                                                                               |                                                                                                                                         
TAATGAATTTAATATAACTAATATTGCTGCACCTGTATCACTTAGAACAGCTAACCAAAGTGTTAGTAATCCAGGGAATACTAACACAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATAT  >  CP000730/76037‑76317

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: