Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007301,929,8720GA64.2% 108.6 / 128.2 136intergenic (‑955/‑213)USA300HOU_1794/USA300HOU_1796hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (28/20);  new base A (46/40);  total (75/61)
Fisher's exact test for biased strand distribution p-value = 7.17e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.97e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 138 total aligned reads displayed.

GTGTAGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATT  >  CP000730/1929726‑1930019
                                                                                                                                                        |                                                                                                                                                    
  gtAGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCtt                                                                                                                                                   >  2:188124/1‑148 (MQ=255)
  gtAGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGAG‑TA‑TAA‑G‑G‑T‑GGTGcgt                                                                                                                                                   >  1:504943/1‑146 (MQ=255)
    aGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCGTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAt                                                                                                                                                 >  2:104148/1‑148 (MQ=255)
      aCGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCCGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAt‑tt                                                                                                                                              >  1:486394/1‑148 (MQ=255)
      aCGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAt‑tt                                                                                                                                              >  1:630912/1‑148 (MQ=255)
             aaTCTATCAGCTAGAATCATATAACTTAGCAGAAGCAAGTGACGGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTca                                                                                                                                       <  1:158054/148‑1 (MQ=255)
               tCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAAGTG‑TC‑TAA‑G‑G‑T‑GATGATTAT‑TTTCGTTcaca                                                                                                                                     >  1:406874/1‑148 (MQ=255)
                 tATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCAcatc                                                                                                                                   <  1:336834/148‑1 (MQ=255)
                               atatAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGtcat                                                                                                                     <  1:291432/148‑1 (MQ=255)
                                tataACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCCCATCATAGCACCAGtcatc                                                                                                                    >  1:388086/1‑148 (MQ=255)
                                  taACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAg                                                                                                                  >  2:617823/1‑148 (MQ=255)
                                     cTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTgg                                                                                                               >  1:283808/1‑148 (MQ=255)
                                           aGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCCGTGc                                                                                                         >  2:410016/1‑148 (MQ=255)
                                             aaGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCa                                                                                                       <  1:620853/148‑1 (MQ=255)
                                                gaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGc                                                                                                   <  1:337606/138‑1 (MQ=255)
                                                 aagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCg                                                                                                  >  2:167658/10‑148 (MQ=255)
                                                  agtagatatgCTTGTATATTCACAGATGGTATAATAATAGGTGCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGt                                                                                                 <  1:269774/140‑1 (MQ=255)
                                                  agtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑C‑TTT‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGt                                                                                                 <  2:268944/140‑1 (MQ=255)
                                                    tagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATGGCACCAGTCGTCAGTGGCTGTGCTGTTGCGtat                                                                                               <  1:316497/142‑3 (MQ=255)
                                                     aggtatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGTAGGTG‑CA‑TTACT‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatt                                                                                              <  2:159144/143‑1 (MQ=255)
                                                      gatatgCTTGTATATTCACAGATGATATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatta                                                                                             >  1:374410/5‑144 (MQ=255)
                                                        tatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑C‑TTT‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattata                                                                                           <  2:40361/146‑7 (MQ=255)
                                                              tgtatattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATGGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTAtt                                                                                     >  1:359245/13‑148 (MQ=255)
                                                               gtatatccacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑C‑TTT‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTg                                                                                    <  1:109653/137‑1 (MQ=255)
                                                               gTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTg                                                                                    <  1:507956/148‑1 (MQ=255)
                                                                tatattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTgg                                                                                   >  1:241749/11‑148 (MQ=255)
                                                                tataTTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGCTTTTTTCTTATTg                                                                                    >  1:153631/1‑148 (MQ=255)
                                                                tataTTTGCCGATGATATAATAGTAGAGGCGCCTATCTCTCAGGCGTCAATTGAGACGCAGAGAGGTGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCAGCAGTGGCCGTGCCATTGCGTTTTTTTCTTATTg                                                                                    >  1:382153/1‑148 (MQ=255)
                                                                 atattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGc                                                                                  <  2:172601/139‑1 (MQ=255)
                                                                  tattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt                                                                                 >  1:415389/9‑148 (MQ=255)
                                                                  tattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt                                                                                 >  1:199135/9‑148 (MQ=255)
                                                                  tattcacagatgggataataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt                                                                                 <  1:302472/134‑1 (MQ=255)
                                                                  tatTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGc                                                                                  >  1:49711/1‑148 (MQ=255)
                                                                   atcaacagatggtATAATAATCGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGTGGTG‑CATTAC‑T‑T‑T‑GCTAATCTT‑TTTCGTTTACGTCATAGCACTTGTCATCAGTGGCTGTGCTGTTCCTTATTATACTTATTGGCtt                                                                                <  2:36379/141‑2 (MQ=255)
                                                                      tgacGATGATATAATAGTATAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAg                                                                              >  2:527792/4‑148 (MQ=255)
                                                                      tGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGTCATTGCGTTTTTTTCTTATTGGCTAAg                                                                              <  1:439269/148‑1 (MQ=255)
                                                                      tGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAg                                                                              <  1:131792/148‑1 (MQ=255)
                                                                      cacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGt                                                                             >  2:381674/5‑148 (MQ=255)
                                                                      cacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGt                                                                             >  1:469780/5‑148 (MQ=255)
                                                                      cacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGGG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGt                                                                             >  1:95466/5‑148 (MQ=255)
                                                                      cacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAA‑TTA‑ACGAAGATAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTTTTGGCTTAGt                                                                             >  2:244830/5‑148 (MQ=255)
                                                                       acagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTa                                                                            >  2:581847/4‑148 (MQ=255)
                                                                       acagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGAGAAA‑TAC‑T‑T‑T‑GCT‑CTTGTGAAACGTTCACATCATAGCACCAGTCATCAGTTGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTa                                                                            >  1:622083/4‑148 (MQ=255)
                                                                        cagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaa                                                                           <  1:513922/146‑2 (MQ=255)
                                                                        cagatggtATAATAATAGAGTCGCCTATCTCGCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaa                                                                           <  1:422560/146‑2 (MQ=255)
                                                                             ggtataATGATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa                                                                      <  2:4470/146‑1 (MQ=255)
                                                                             ggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa                                                                      >  2:300374/3‑148 (MQ=255)
                                                                              gtataATATTAGATTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑CTT‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaa                                                                     <  2:309215/147‑1 (MQ=255)
                                                                              gtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAACCGCaa                                                                     >  2:236395/2‑148 (MQ=255)
                                                                              gtataATAATAGAGTCGCCGATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTTCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaa                                                                     >  2:243198/2‑148 (MQ=255)
                                                                               tataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACAAGTCATCAGTGGCGGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaac                                                                    >  1:118394/1‑147 (MQ=255)
                                                                               tataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTGGCGTATTATACTTATTGGCTTAGTAAACGCaac                                                                    <  2:212606/148‑2 (MQ=255)
                                                                               tataATAATAGAGTCGCCTATCACTCAGGCGTCCATT‑‑GACGAAGAGAGGAGGAG‑CATTAC‑T‑T‑T‑GCTATTCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATCCTTATTGACTTAGTAAAGGCaac                                                                    >  1:345426/1‑147 (MQ=255)
                                                                                ataataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGCTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaaca                                                                   >  2:511353/1‑146 (MQ=255)
                                                                                ataataataGAGGCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑C‑TTT‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaaca                                                                   <  2:262499/148‑3 (MQ=255)
                                                                                 taataGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATa                                                                   >  1:291438/1‑148 (MQ=255)
                                                                                 caataatAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑C‑TTT‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaa                                                                  <  1:179600/147‑4 (MQ=255)
                                                                                  aataatAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaa                                                                 >  2:354561/1‑144 (MQ=255)
                                                                                   ataatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑CTT‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaat                                                                >  1:275055/5‑143 (MQ=255)
                                                                                    tagtagAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTCAGTAGACGCAATACaa                                                                >  2:200883/1‑148 (MQ=255)
                                                                                    taatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaata                                                               <  1:511119/145‑7 (MQ=255)
                                                                                    ccatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CAGTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAGCGCaacaaata                                                               <  1:452869/145‑7 (MQ=255)
                                                                                     aatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GATAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataa                                                              >  2:464813/3‑141 (MQ=255)
                                                                                      atagATTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑C‑TTT‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataat                                                             <  2:341843/147‑9 (MQ=255)
                                                                                      atagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGTTTAGTAAACGCaaaaaataat                                                             >  1:2505/2‑140 (MQ=255)
                                                                                      atagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataat                                                             >  1:383988/2‑140 (MQ=255)
                                                                                      atagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataat                                                             >  1:223447/2‑140 (MQ=255)
                                                                                      atagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataat                                                             <  1:271899/147‑9 (MQ=255)
                                                                                      atagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑CTT‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataat                                                             <  1:60655/147‑9 (MQ=255)
                                                                                       tagAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAAt                                                             >  1:370838/1‑148 (MQ=255)
                                                                                       tagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATAAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGGGATGCGGTGACGTATTATACTTATTGGCTTAGTAACCGCaacgaatagtt                                                            >  1:554583/1‑139 (MQ=255)
                                                                                       tagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GAAGCAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TATCGTGCACATCATAGCACCAGTCATCCGCGGCTCTGCTGTTGCGTGTTATACTTATTGGCTTCGTAAACGCaacaaataatt                                                            >  2:470655/1‑139 (MQ=255)
                                                                                       tagAGTCGCCTATCTCTCAGGCGTCAACT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑C‑T‑TCGCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGCGGCCGTGCTGGTGCGGATTATACCTATTGGCCCAGAAAACGCaacgaagaatt                                                            >  2:389544/1‑139 (MQ=255)
                                                                                       tagAGTCGCCTATCTCTCAGGCGTCAA‑‑TGGACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGAAAACGCaacaaataatt                                                            >  1:173719/1‑139 (MQ=255)
                                                                                       gagagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGcgacaaataatt                                                            >  2:110164/2‑137 (MQ=255)
                                                                                       aagagGCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑C‑TTT‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatt                                                            <  2:274172/147‑10 (MQ=255)
                                                                                        agagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatta                                                           >  1:131950/1‑138 (MQ=255)
                                                                                        agagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑T‑GCTAATCAT‑TTTCGTGCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatta                                                           >  2:149646/1‑138 (MQ=255)
                                                                                          agTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAgg                                                          <  1:391640/148‑1 (MQ=255)
                                                                                          agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGCGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTGAACGCaccaactaattaat                                                         >  1:565995/1‑135 (MQ=255)
                                                                                          agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat                                                         >  2:563330/1‑136 (MQ=255)
                                                                                          agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat                                                         >  2:225320/1‑136 (MQ=255)
                                                                                          agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGGAAACGCaaaaaataattaat                                                         >  2:434525/1‑136 (MQ=255)
                                                                                          agTCGCCTATCTCGAAGGTGTCAATTTAGACGGAGAGAGGATGTG‑GA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACTTCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTCTTTCTTATTGGCTAAGTAGACGCAATACAAAATAgg                                                          <  1:544530/148‑1 (MQ=255)
                                                                                           gTCGCCTATCTCTCAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAC‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                                        <  1:10915/148‑14 (MQ=255)
                                                                                             cGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGa                                                       >  2:369625/1‑148 (MQ=255)
                                                                                             cGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGa                                                       >  1:17802/1‑148 (MQ=255)
                                                                                             cGCCTACCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGa                                                       <  1:583882/148‑1 (MQ=255)
                                                                                                      ctcAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGcc                                              >  1:359539/1‑148 (MQ=255)
                                                                                                         aGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCa                                           <  1:198676/148‑1 (MQ=255)
                                                                                                                   tgaGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GAGTCTTAT‑GTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCACACCAATaaaaa                                 <  2:564437/146‑1 (MQ=255)
                                                                                                                     aGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATc                               <  1:104148/148‑1 (MQ=255)
                                                                                                                      gACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATcc                              >  2:42579/1‑148 (MQ=255)
                                                                                                                                  aggTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAGAATCCCCTCACTACCGc                  <  2:112935/148‑1 (MQ=255)
                                                                                                                                    gtg‑tA‑TAA‑G‑G‑T‑TATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCaa                <  2:613904/148‑1 (MQ=255)
                                                                                                                                      g‑tA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAAt              >  2:38275/1‑148 (MQ=255)
                                                                                                                                        ta‑taA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGAAATATAGCCGCGCCAATAAAAATGCCCTCACTACCGCAAATa             >  1:401236/1‑148 (MQ=255)
                                                                                                                                                 g‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATCGCCGCACCAGTAAAAATCCCCTCACTACCGCAAATAGTGAgg       >  1:84708/1‑148 (MQ=255)
                                                                                                                                                      aTGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGa    <  2:370838/148‑1 (MQ=255)
                                                                                                                                                        gCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCCTCTTGGCTCAGTAGACGCAATACAAAATAGGTGACATATATCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTACGGGGAtt  >  2:403333/1‑148 (MQ=255)
                                                                                                                                                        |                                                                                                                                                    
GTGTAGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATT  >  CP000730/1929726‑1930019

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑