| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 52495 = | 29 (1.240) | 43 (1.850) +T |
3/278 | 2.9 | 62.9% | intergenic (+105/‑568) | USA300HOU_0043/USA300HOU_0044 | hypothetical membrane protein/possible transcriptional regulator |
| ? | CP000730 | = 52988 | 22 (0.940) | intergenic (+598/‑75) | USA300HOU_0043/USA300HOU_0044 | hypothetical membrane protein/possible transcriptional regulator | |||||
AAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTGG > CP000730/52851‑53128 | aaaTCATCGGAGTAAGCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATcgcg < 1:225819/141‑1 (MQ=17) atcGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGaaa < 1:313063/141‑1 (MQ=32) aTCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGt < 1:251658/141‑1 (MQ=38) cgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCTGAGGAATTGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTaa < 1:98873/141‑1 (MQ=255) gTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCTCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTaaa < 1:336592/141‑1 (MQ=255) gTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTaaa < 1:205292/141‑1 (MQ=255) ataatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATGGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAAt < 1:304509/141‑1 (MQ=255) ataatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTtaattaat < 1:310115/141‑1 (MQ=255) taatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATg < 1:251107/141‑1 (MQ=255) aatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATAGCGTGAAATTATCAGGTGACTCGGATCATATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAGAATGGTAGACGGTTTGATTAAATTAATgg > 1:237912/1‑141 (MQ=14) gagGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATAAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGAAACTTAATAGAGTAt > 1:179736/1‑141 (MQ=255) tcttagtaATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTgg < 1:343740/138‑1 (MQ=255) taATCGCGAGAACATCGCGTGAAATTATCCGAGGAATCGTTTGAAATCACCGCAGTAACCGCGCGAACAAAACAGGATATACAATATAAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAAt < 1:491025/141‑1 (MQ=255) aTCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTg < 1:177588/141‑1 (MQ=255) aaaaTCGCGTGAAATAATCTGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTTTGGTTTGGAGGAATTGCGTTGCAt < 1:317668/141‑1 (MQ=255) aTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTCATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTGGCATaga > 1:291725/1‑141 (MQ=255) tCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaa > 1:479385‑M2/1‑57 (MQ=255) tCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATagag < 1:68333/141‑1 (MQ=255) gcgTGAAATAATCAGAGGAATCGTTTTAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaat > 1:455615‑M2/1‑55 (MQ=255) gTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttg > 1:29599‑M2/1‑53 (MQ=255) gTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAg > 1:172221/1‑141 (MQ=255) gAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacg < 1:441780‑M2/109‑59 (MQ=255) gAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacg < 1:441765‑M2/54‑4 (MQ=255) aaaTAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagagtaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaatcatcgt > 1:236714‑M2/1‑50 (MQ=255) aataatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTaaa < 1:290144/141‑1 (MQ=255) ataatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatc > 1:124739‑M2/1‑48 (MQ=255) agagGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatc > 1:186574‑M2/1‑42 (MQ=255) agagGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagta < 1:272136‑M2/83‑42 (MQ=255) gagGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcg > 1:67697‑M2/1‑41 (MQ=255) agGAATCGTTTGAAAATATCGTAGTGATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatggc < 1:247866‑M2/141‑102 (MQ=255) ggAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtag < 1:410223‑M2/133‑95 (MQ=255) ggAATCGTTTGAAAACATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcg > 1:439968‑M2/1‑39 (MQ=255) gcgatcgTTTGAAAACATCCTTATAATCGTGTGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcg > 1:425618‑M2/4‑39 (MQ=255) gAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatc < 1:190469‑M2/93‑56 (MQ=255) gAATCGTATGAAATCATCGTAGTACTCGGGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtaggactggcgc < 1:315086‑M2/141‑104 (MQ=255) aaTCGTTTGAAAACATCCTAGAAATCGCGCGAAAATCacgtgaaataatcaggaatcgtgttgtatatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcg > 1:488710‑M2/1‑37 (MQ=255) aTCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcg > 1:39190‑M2/1‑36 (MQ=255) cGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtt > 1:2679‑M2/1‑34 (MQ=255) cGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatc < 1:28738‑M2/66‑33 (MQ=255) cGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtt > 1:139675‑M2/1‑34 (MQ=255) cGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAg > 1:305925/1‑141 (MQ=255) gtgttaaatcaacGTAGTAATCGCGCGAAAATCacgggaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaa > 1:226762‑M2/6‑33 (MQ=255) tttGAAATCATCGTAATAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaat > 1:16323‑M2/1‑32 (MQ=255) gAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaa < 1:246345‑M2/80‑52 (MQ=255) aaTCATCCTAGTAATCGCGTGAAAATCacgtgaaacaatcaacggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgt > 1:464111‑M2/1‑27 (MQ=255) tcatcGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtt < 1:191858‑M2/105‑81 (MQ=255) aatcgTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaa > 1:470207‑M2/2‑24 (MQ=255) atcGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgc > 1:477522‑M2/1‑23 (MQ=255) atcGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGaaa < 1:331272/141‑1 (MQ=255) gtagtaATCGCGCGAAAATCacgtgaaataatcagaggaatcg > 1:370579‑M2/1‑20 (MQ=255) aaTCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcaga > 1:313275‑M2/1‑15 (MQ=255) aaTCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatc < 1:472631‑M2/102‑88 (MQ=255) aaTCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatc < 1:156769‑M2/47‑33 (MQ=255) gcgAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgttt < 1:316453‑M2/90‑82 (MQ=255) cgAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGa > 1:482646/1‑141 (MQ=255) aaaTCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgatataatcagaggaatcgttt > 1:297472‑M2/1‑5 (MQ=255) aaaTCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgttt < 1:405343‑M2/86‑82 (MQ=255) aaaTCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatca < 1:432164‑M2/61‑57 (MQ=255) aaTCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgc < 1:242738‑M2/107‑104 (MQ=255) aaTCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaaacgcgcgaaaatcacgtaaaataatcagaggaatcgtgtg < 1:459298‑M2/141‑138 (MQ=255) aaTCacgggaaataaccagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttg > 1:72971‑M2/1‑4 (MQ=255) aTCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttga > 1:470941‑M2/1‑3 (MQ=255) tCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaattgcgcgaaaatc < 1:428823‑M2/57‑56 (MQ=255) tCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatca < 1:329954‑M2/71‑70 (MQ=255) cacgtgaaataatcagaggcatcgtgtgaaatcatcgtagtaatagcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaa < 1:271867‑M2/141‑141 (MQ=255) | AAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTGG > CP000730/52851‑53128 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |