| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP000730 | 807,436:1 | +T | 10.5% | intergenic (‑634/‑167) | USA300HOU_0753 ← / → nrdI | DMT superfamily drug/metabolite transporter/ribonucleotide‑diphosphate reductase subunit gamma |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 807,436 | 1 | . | T | 10.5% | 222.6 / 22.1 | 57 | intergenic (‑634/‑167) | USA300HOU_0753/nrdI | DMT superfamily drug/metabolite transporter/ribonucleotide‑diphosphate reductase subunit gamma |
| Reads supporting (aligned to +/- strand): ref base . (17/34); new base T (2/4); total (19/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.48e-01 | |||||||||||
AAGTAATTTAACACAGAAATTTAATAGTTATTATCAATTAATAGTCATATTTTTAGAAAATGTACTGAGCAAATGGAAGATATCCAATGATGTAAACACTACATATAGTGATTTTTATACATTCAACCCATATAAGCTAC‑TATTTTCTCAAATATAAATCTA‑TGCAATTGGTTTACATTTGAGAAAATAAGTAGCTTCATTATAGTTAATACAATGCTGAGATAACCATAGTAACCATGTTGTTAAAGCATTTTTTAATTGGAATGACTACTTTATTT > CP000730/807297‑807574 | aaGTAATTTAACACAGAAATTTAATAGTTATTATCAATTAATAGTCATATTTTTAGAAAATGTACTGAGCAAATGGAAGATATCCAATGATGTAAACACTACATATAGTGATTTTTATACATTCAACCCATATAAGctac‑t > 1:818353/1‑141 (MQ=255) aGTAATTTAACACAGAAATTTAACAGTTATTATCAATTAATAGTCATATTTTTAGAAAATGTACTGAGCAAATGGAAGATATCCAATGATGTAAACACTACATATAGTGATTTTTATACATTCAACCCATATAAGctac‑ta < 1:210351/141‑1 (MQ=255) gTAATTTAACACAGAAATTTAATAGTTATTATCAATTAATAGTCATATTTTTAGAAAATGTACTGAGCAAATGGAAGATATCCAATGATGTAAACACTACATATAGTGATTTTTATACATTCAACCCATATAAGCTAC‑TAt < 1:268456/141‑1 (MQ=255) aTTTAACACAGAAATTTAATAGTTATTATCAATTAATAGTCATATTTTTAGAAAATGTACTGAGCAAATGGAAGATATCCAATGATGTAAACACTACATATAGTGATTTTTATACATTCAACCCATATAAGCTAC‑TAtttt < 2:862949/141‑1 (MQ=255) tAACAGAGAAATTTAATAGTTATTATCAATTAATAGTCATATTTTTAGAAAATGTACTGAGCAAATGGAAGATATCCAATGATGTAAACACTACATATAGTGATTTTTATACATTCAACCCATATAAGCTAC‑TATTTtctc < 1:13484/141‑1 (MQ=255) acacAGAAATTTAATAGTTATTATCAATTAATAGTCATATTTTTAGAAAATGTACTGAGCAAATGGAAGATATCCAATGATGTAAACACTACATATAGTGATTTTTATACATTCAACCCATATAAGCTACTTATTTTCTCa > 2:223607/1‑141 (MQ=255) acacAGAAATTTAATAGTTATTATCAATTAATAGTCATATTTTTAGAAAATGTACTGAGCAAATGGAAGATATCCAATGATGTAAACACTACATATAGTGATTTTTATACATTCAACCCATATAAGCTACTTATTTTCTCa > 1:348338/1‑141 (MQ=255) acaGAAATTTAATAGTTATTATCAATTAATAGTCATATTTTTAGAAAATGTACTGAGCAAATGGAAGATATCCAATGATGTAAACACTACATATAGTGATTTTTATACATTCGGAACTCATAAGCTAC‑TATTTTCTCAAat < 1:418197/141‑1 (MQ=255) acaGAAATTTAATAGTTATTATCAATTAATAGTCATATTTTTAGAAAATGTACTGAGCAAATGGAAGATATCCAATGATGTAAACACTACATATAGTGATTTTTATACATTCAACCCATATAAGCTAC‑TATTTTCTCAAat < 2:335395/141‑1 (MQ=255) caGAAATTTAATAGTTATTATCAATTAATAGTCATATTTTTAGAAAATGTACTGAGCAAATGGAAGATATCCAATGATGTAAACACTACATATAGTGATTTTTATACATTCAACCCATATAAGCTAC‑TATTTTCTCAAata < 1:84456/141‑1 (MQ=255) aaGAAATTTAATAGTTATTATCAATTAATAGTCATATTTTTAGAAAATGTACTGAGCAAATGGAAGATATCCAATGATGTAAACACTACATATAGTGATTTTTATACATTCAACCCATATAAGCTAC‑TATTTTCTCAAata < 1:464392/140‑1 (MQ=255) gAAATTTAATAGTTATTATCAATTAATAGTCATATTTTTAGAAAATGTACTGAGCAAATGGAAGATATCCAATGATGTAAACACTACATATAGTGATTTTTATACATTCAACCCATATAAGCTAC‑TATTTTCTCAAAtata < 2:148654/141‑1 (MQ=255) tAATAGTTATTATCAATTAATAGTCATATTTTTAGAAAATGTACTGAGCAAATGGAAGATATCCAATGATGTAAACACTACATATAGTGATTTTTATACATTCAACCCATATAAGCTAC‑TATTTTCTCAAATATAAATCTa < 1:247471/141‑1 (MQ=255) ttatCAATTAATAGTCATATTTTTAGAAAATGTACTGAGCAAATGGAAGATATCCAATGATGTAAACACTACATATAGTGATTTTTATACATTCAACCCATATAAGCTAC‑TATTTTCTCAAATATAAATCTA‑TGCAATTgg < 1:289710/141‑1 (MQ=255) ttatCAATTAATAGTCATATTTTTAGAAAATGTACTGAGCAAATGGAAGATATCCAATGATGTAAACACTACATATAGTGATTTTTATACATTCAACCCATATAAGCTAC‑TATTTTCTCAAATATAAATCTA‑TGCAATTgg < 1:463854/141‑1 (MQ=255) atatCAATTAATAGTCAAATTTTTAGAAAATGTACCGAGCAAATGGAAGATATCCAATGATGTAAACACTACATATAGTGATTTTTATACATTCAACCCATATAAGCTAC‑GATTTTCTAAAAAATAAATCTA‑AGCAAttcg < 2:794890/140‑3 (MQ=255) tatCAATTAATAGTCATATTTTTAGAAAATGTACTGAGCAAATGGAAGATATCCAATGATGTAAACACTACATATAGTGATTTTTATACATTCAACCCATATAAGCTAC‑TATTTTCTCAAATATAAATCTA‑TGCAATTGGt < 1:830876/141‑1 (MQ=255) aTTAATAGTCATATTTTTAGAAAATGTACTGAGCAAATGGAAGATATCCAATGATGTAAACACTACATATAGTGATTTTTATACATTCAACCCATATAAGCTAC‑TATTTTCTCAAATATAAATCTA‑TGCAATTGGTTTACa < 2:51694/141‑1 (MQ=255) aTTAATAGTCATATTTTTAGAAAATGTACTGAGCAAATGGAAGATATCCAATGATGTAAACACTACATATAGTGATTTTTATACATTCAACCCATATAAGCTAC‑TATTTTCTCAAATATAAATCTA‑TGCAATTGGTTTACa < 2:824106/141‑1 (MQ=255) ttAATAGTCATATTTTTTGTAAAAGTACGGAGCAAATGGAAGATATCCAATGATGTAAACACTACATATAGTGATTTTTATACATTCAACCCATATAAGCTAC‑TATTTTCTCAAATATAAATCTT‑TGCACTTGGTTTAcct > 2:837097/1‑139 (MQ=255) aTAGTCATATTAATAGAAAATATAATGAGCAAATGGAAGATATCCAATGATGTAAACACTACATATAGTGATTTTTTTTTTTTTTATTCATATAAGATAA‑TATTATACGAAATTGATTTCTT‑TGCAATTGGTTTACATTTg > 2:178380/1‑141 (MQ=255) gTCATATTTTTAGAAAATGTACTGAGCAAATGGAAGATATCCAATGATGTAAACACTACATATAGTGATTTTTATACATTCAACCCATATAAGATAC‑TATTTTCTCAAATATAAATCTA‑TGCAATTGGTTTACATTTgaga < 2:568305/141‑1 (MQ=255) tCATCTTTATAGAAAATGAACTGAGCAAATGGAAGATATCCAATGATGTAAACACTACATATAGTGATTTTTATACATTCAACCCATATAAGCTAC‑TATTATCTCAAATATAAATCTA‑TGCAATTGGTTTACATTTGAGaa < 1:272339/141‑1 (MQ=255) atatTTTTAGAAAATGTACTGAGCAAATGGAAGATATCCAATGATGTAAACACTACATATAGTGATTTTTATACATTCAACCCATATAAGCTAC‑TATTTTCTCAAATATAAATCTA‑TGCAATTGGTTTACATTTGAGaaaa < 1:810669/141‑1 (MQ=255) atTTTTAGAAAATGTACTGAGCAAATGGAAGATATCCAATGATGTAAACACTACATATAGTGATTTTTATACATTCAACCCATATAAGCTAC‑TATTTTCTCAAATATAAATCTA‑TGCAATTGGTTTACATTTGAGAAAATa < 2:20078/141‑1 (MQ=255) tAGAAAATGTACTGAGCAAATGGAAGATATCCAATGATGTAAACACTACATATAGTGATTTTTATACATTCAACCCATATAAGCTACTTATTTTCTCAAATGTAAACCAA‑TTGCATAGATTTATATTTGAGAAAATagtag < 2:434587/141‑5 (MQ=18) tAGAAAATGTACTGAGCAAATGGAAGATATCAAATGATGTAAACACTACATATAGTGATTTTTATACATTGAACCCATATAAGCTAC‑TATTTTCTCAAATATAAATCTA‑TGCAATTGGTTTACATTTGAGAAAATAAGTat > 2:330610/1‑140 (MQ=255) aaaaTGTACTGAGCAAATGGAAGATATCCAATGATGTAAAGACTACATATAGTGATTTTTATACATTCAACCCATATAAGCTACTTATTTTCTCAAATGTAAACCAATTGC‑ATAGATTTATATTTGAGAAAAT‑AGTAGCtt < 2:441467/141‑1 (MQ=17) tGTACTGAGCAAATGGAAGATATCCAATGATGTAAACACTACATATAGTGATTTTTATACATTCAACCCATATAAGCTACTTATTTTCTCAAATGTAAACCAATTGC‑ATAGATTTATATTTGAGAAAAT‑AGTAGCttatat < 1:223607/141‑5 (MQ=17) tGTACTGAGCAAATGGAAGATATCCAATGATGTAAACACTACATATAGTGATTTTTATACATTCAACCCATATAAGCTACTTATTTTCTCAAATGTAAACCAATTGC‑ATAGATTTATATTTGAGAAAAT‑AGTAGCttatat < 2:348338/141‑5 (MQ=17) gTACTGAGCAAATGGAAGATATCCAATGATGTAAACACTACATATAGTGATTTTTATACATTCAACCCATATAAGCTAC‑TATTTTCTCAAATATAAATCTA‑TGCAATTGGTTTACATTTGAGAAAATAAGTAGCTTCATta < 2:328927/141‑1 (MQ=255) gTACTGAGCAAATGGAAGATATCCAATGATGTAAACACTACATATAGTGATTTTTATACATTCAACCCATATAAGCTAC‑TATTTTCTCAAATATAAATCTA‑TGCAATTGGTTTACATTTGAGAAAATAAGTAGCTTCATta < 2:161864/141‑1 (MQ=255) cTGAGCAAATGGAAGATATCCAATGATGTAAACACTACATATAGTGATTTTTATACATTCAACCCATATAAGCTAC‑TATTTTCTCAAATATAAATCTA‑TGCAATTGGTTTACATTTGAGAAAATAAGTAGCTTCATTATAg < 2:755993/141‑1 (MQ=255) gAGCAAATGGAAGATATCCAATGATGTAAACACTACATATAGTGATTTTTATACATTCAACCCATATAAGCTAC‑TATTTTCTCAAATATAAATCTA‑TGCAATTGGTTTACATTTGAGAAAATAAGTAGCTTCATTATAGtt < 1:147758/141‑1 (MQ=255) gAGCAAATGGAAGATATCCAATGATGTAAACACTACATATAGTGATTTTTATACATTCAACCCATATAAGCTAC‑TATTTTCTCAAATATAAATCTA‑TGCAATTGGTTTACATTTGAGAAAAGAAGTAGCTTCATTATAGtt > 2:669842/1‑141 (MQ=255) gCAAATGGAAGATATCCAATGATGTAAACACTACATATAGTGATTTTTATACATTCAACCCATATAAGCTAC‑TATTTTCTCAAATATACATCTA‑TGCAATTGGTTTACATTTGAGAAAATAAGTAGCTTCATTATAGTTaa < 2:818353/141‑1 (MQ=255) aaaTGGAATATATCCAATGATGTAAACACTACATATAGTGATTTTTATACATTCAACCCATATAAGCTAC‑TATTTTCTCAAATATAAATCTA‑TGCAATTGGTTTACATTTGAGAAAATAAGTAGCTTCATTATAGTTAATa < 1:236094/141‑1 (MQ=255) ggAAGATATCCAATGATGTAAACACTACATATAGTGATTTTTATACATTCAACCCATCTAAGCTAC‑TATTTTCTCAAATATAAATCTA‑TGCAATTGGTTTACATTTGAGAAAATAAGTAGCTTCCTTATAGTTAATACAAt > 1:150166/1‑141 (MQ=255) ggAAGATATCCAATGATGTAAACACTACATATAGTGATTTTTATACATTCAACCCATATAAGCTAC‑TATTTTCTCAAATATAAATCTA‑TGCAATTGGTTTACATTTGAGAAAATAAGTAGCTTCATTATAGTTAATACAAt > 1:8384/1‑141 (MQ=255) gAAGATATCCAATGATGTAAACACTACATCTAGTGATTTTTATACATTCAACCCATATAAGCTAC‑TATTTTCTCAAATATAAATCTA‑TGCAATTGGTTTACATTTGAGAAAATAAGTAGCTTCTTTATATTTAATACAAtc > 2:486913/1‑140 (MQ=255) aaGATCTCCAATGATGTAAACACTACATATAGTGATTTTTATACATTCAACCCATATAAGCTAC‑TATTTTCTCAAATATAAATCTA‑TGCAATTGGTTTACATTTGAGAAAATAAGTAGCTTCATTATAGTTAATACAATGc < 2:466276/141‑1 (MQ=255) tatCCAATGATGTAAACACTACATATAGTGATTTTTATACATTCAACCCATATAAGCTAC‑TATTTTCTCAAATATAAATCTA‑TGCGATTGGTTTACATTTGAGAAAATAAGTAGCTTCATTATAGTTAATACAATGCTgag < 1:163415/141‑1 (MQ=255) cAATGATGTAAACACTACATATAGTGATTTTTATACATTCAACCCATATAAGCTAC‑TATTTTCTCAAATATAAATCTA‑TGCAATTGGTTCACATTTGAGAAAATAAGTAGCTTCATTATAGTTAATACAATGCTGAGATaa < 2:688414/141‑1 (MQ=255) tgatgTAAACACTACATATAGTGATTTTTATACATTCAACCCATATAAGCTAC‑TATTTTCTAAAATATAAATCTA‑TGCAATTGGTTTACATTTGAGAAAATAAGTAGCTTCATTATAGTTAATACAATGCTGAGATAACCa > 2:803634/1‑141 (MQ=255) gaaaCACTACATATAGTGATTTTTATACATTCAACCCATATAAGCTAC‑TATTTTCTCAAATATAAATCTA‑TGCAATTGGTTTACATTTGAGAAAATAAGTAGCTTCATTATAGTTAATACAATGCTGAGATAACCATAGTa < 1:289559/140‑1 (MQ=255) aaaaCACAACATAGAGAGATTTTGAAACATTCAACCCATATAAGCTAC‑TATTTTCTCAAATATAAATCTA‑TGCAATTGGTTTACATTTGAGAAAATAAGTAGCTTCATTATAGTTAATACAATGCTGAGATAACCATAGTa < 1:34242/140‑1 (MQ=255) cacTACATATAGTGATTTTTATACATTCAACCCATATAAGCTAC‑TATTTTCTCAAATATAAATCTA‑TGCAATTGGTTTACATTTGAGAAAATAAGTAGCTTCATTATAGTTAATACAATGCTGAGATAACCATAGTAACCa < 2:171073/141‑1 (MQ=255) aCATATAGTGATTTTTATACATTCAACCCATATAAGCTAC‑TATTTTCTCAAATATAAATCTA‑TGCAATTGGTTTACATTTGAGAAAATAAGTAGCTTCATTATAGTTAATACAATGCTGAGATAACCATAGTAACCAtgtt > 1:318046/1‑141 (MQ=255) tataGTGATTTTTATACATTCAACCCATATAAGCTAC‑TATTTTCTCAAATATAAATCTA‑TGCAATTGGTTTACATTTGAGAAAATAAGTAGCTTCATTATAGTTAATACAATGCTGAGATAACCATAGTAACCATgttgtt > 2:680651/1‑141 (MQ=255) taGTGATTTTTATACATTCATCCCATATAAGCTAC‑TATTTTCTCAAATATAAATCCA‑TGCAATTGGTTTACATTTGAGAAAATAAGTAGCTTCATTATAGTTAATACATTGCTGAGATAACCATAGTAACCATGTTGTTaa < 2:313160/141‑1 (MQ=255) tttttATACATTCAACCCATATAAGCTAC‑TATTTTCTCAAATATAAATCTA‑TGCAATTGGTTTACATTTGAGAAAATAAGTAGCTTCATTATAGTTAATACAATGCTGAGATAACCATAGTAACCATGTTGTTAAAGCAtt > 2:819912/1‑141 (MQ=255) tttttATACATTCAACCCATATAAGCTAC‑TATTTTCTCAAATATAAATCTA‑TGCAATTGGTTTACATTTGAGAAAATAAGTAGCTTCATTATAGTTAATACAATGCTGAGATAACCATAGTAACCATGTTGTTAAAGCAtt > 2:369884/1‑141 (MQ=255) tttttATACATTCAACCCATATAAGCTAC‑TATTTTCTCAAATATAAATCTA‑TGCAATTGGTTTACATTTGAGAAAATAAGTAGCTTCATTATAGTTAATACAATGCTGAGATAACCATAGTAACCATGTTGTTAAAGCAtt > 1:787049/1‑141 (MQ=255) tttttATACATTCAACCCATATAAGCTAC‑TATTTTCTCAAATATAAATCTA‑TGCAATTGGTTTACATTTGAGAAAATAAGTAGCTTCATTATAGTTAATACAATGCTGAGATAACCATAGTAACCATGTTGTTAAAACAtt > 1:19685/1‑141 (MQ=255) ttATACATTCAACCCATATAAGCTAC‑TATTTTCTCAAATATAAATCTA‑TGCAATTGGTTTACATTTGAGAAAATAAGTAGCTTCATTATAGTTAATACAATGCTGAGATAACCATAGTAAGCATGTTGTTAAAGCAttttt < 1:524353/141‑1 (MQ=255) tataCATTCAACCCATATAAGCTAC‑TATTTTCTCAAATATAAATCTA‑TGCAATTGGTTTACATTTGAGAAAATAAGTAGCTTCATTATAGTTAATACAATGCTGAGATAACCATAGTAACCATGTTGTTAAAGCAtttttt > 1:431237/1‑141 (MQ=255) taCATTCAACCCATATAAGCTAC‑TATTTTCTCAAATATAAATCTA‑TGCAATTGGTTTACATTTGAGAAAATAAGTAGCTTCATTATAGTTAATACAATGCTGAGATAACCATAGTAACCATGTTGTTAAAGCATTTTTTaa > 1:314582/1‑141 (MQ=255) taCATTCAACCCATATAAGCTAC‑TATGTTCTCAAATATAAATCTA‑TGCAATTGGTTTACATTTGAGAAAATCAGTAGCTTCATTATAGTTAATAGAATGCAGAGATAACCATAGTAACAATGTGGTTAAAGCATTTTTTaa > 2:439946/1‑141 (MQ=255) aaCCCATAGAAGCTAC‑TATTTTCTCAAATATAAATCTA‑TGCAATTGGTTTACATTTGAGAAAATAAGTAGCTTCATTATAGTCAATACAATGCTGAGATAACCATAGTAACCATGTTGTTAAAGCATTTTTTAATTGGAAt < 2:374949/141‑1 (MQ=255) tac‑taTTTTCTCAAATATAAATCTA‑TGCAATTGGGTTACATTTGAGAAAATAAGTAGCTTCATTATAGTTAATACAATGCTGAGATAACCATAGTAACCATGTTGTTAAAGCATTTTTTAATTGGAATGACTACtttattt < 2:612210/141‑1 (MQ=255) tac‑gaTTTTCTCAAATATAAATCTA‑TGCAATTGGTTTACATTTGAGAAAATAAGTAGCTTCATTATAGTTAATACAATGCTGAGATAACCATAGTAACCATGTTGTTAAAGCATTTTTTAATTGGAATGACTACtttattt < 2:608898/141‑1 (MQ=255) | AAGTAATTTAACACAGAAATTTAATAGTTATTATCAATTAATAGTCATATTTTTAGAAAATGTACTGAGCAAATGGAAGATATCCAATGATGTAAACACTACATATAGTGATTTTTATACATTCAACCCATATAAGCTAC‑TATTTTCTCAAATATAAATCTA‑TGCAATTGGTTTACATTTGAGAAAATAAGTAGCTTCATTATAGTTAATACAATGCTGAGATAACCATAGTAACCATGTTGTTAAAGCATTTTTTAATTGGAATGACTACTTTATTT > CP000730/807297‑807574 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |