New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1702267	59 (0.790)	4 (0.060)	4/238	NT	6.4%	intergenic (‑2/+38)	comEA/yqeM	possible competence protein comEA/hypothetical protein
	?	CP000730	= 1702290	64 (0.940)					intergenic (‑25/+15)	comEA/yqeM	possible competence protein comEA/hypothetical protein

CAAAATTTCTTGAAGTATAATCATCTTGTCTCCAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/1702121‑1702267 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaaaccactcGCTCAGACGTGTATA‑AAGT‑TGAG‑GAGTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGTTTTAATTATGGTATTAATTGGTTTTATATTCTG  <  CP000730/1702290‑1702153                                                                                                                                                                                                                                                                                                  CAAAATTTCTTGAAGTATAATCATCTTGTCTCCAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAA                                                                                                                                                     >  1:704737/1‑141 CAAAATTTCTTGAAGTATAATCATCTTGTCTCCAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAA                                                                                                                                                     <  2:191872/141‑1 CAAAATTTCTTGAAGTATAATCATCTTGTCTCCAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATATTTATATCGTAATAAAAATTGATACAATAAAA                                                                                                                                                     >  2:137854/1‑141  AAAATTTCTTGAAGTATAATCATCTTGTCTCCAGAATATAAAATCAATTAATACCATATTTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAAC                                                                                                                                                    <  2:316242/141‑1  AAAATTTCTTGAAGTATAATCATCTTGTCTCCAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAAC                                                                                                                                                    <  1:358520/141‑1     ATTTCTTGAAGTATAATCATCTTGTCTCCAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCAC                                                                                                                                                 <  1:112933/141‑1                                                                                                                           AAAAATTGATACAATAAAACCACTCGCTCAGACGTGTATA‑AAGT‑TGAG‑GTGTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGTTTTAATTATGG                        <  1:53944/141‑1                                                                                                                           AAAAATTGATACAATAAAACCACTC‑CTCA‑AC‑TTTATACACGTCTGAGCGAGTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGTTTTAATTATGG                        <  2:53944/141‑1                                                                                                                            AAAATTGATACAATAAAACCACTCGCTCAGAAGGTTATA‑AAGA‑GGAG‑GTGTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGTTTTAATTATGGT                       <  1:667709/141‑1                                                                                                                            AAAATTGATACAATAAAACCACTC‑CTCA‑AC‑TTTATACACGTCTGAGCGAGTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGTTTTAATTATGGT                       <  2:667709/141‑1                                                                                                                                        gtatAACCCCTCGCTCAGACGTGTATA‑AAGT‑TGAG‑GAGTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTCGTTTTAATTATGGTATTAATTGGTTT           <  1:281522/137‑1                                                                                                                                              CCACTCGCTCAGACGTGTATA‑AAGT‑TGAG‑GAGTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGTTTTAATTTTGGTATTAATTGGTTTTATATT     >  1:368000/1‑141                                                                                                                                                 CTCGCTCAGACGTGTATA‑AAGT‑TGAG‑GAGTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGTTTTAATTATGGTATTAATTGGTTTTATATTCTG  >  2:205082/1‑141                                                                                                                                                 CTCGCTCAGACGTGTATA‑AAGG‑TGAG‑GAGTTGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGTTTTAATTATGGTATTAATTGGTTTTATATTCTG  <  1:242189/141‑1                                                                                                                                                                                                                                                                                                  CAAAATTTCTTGAAGTATAATCATCTTGTCTCCAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/1702121‑1702267 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaaaccactcGCTCAGACGTGTATA‑AAGT‑TGAG‑GAGTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGTTTTAATTATGGTATTAATTGGTTTTATATTCTG  <  CP000730/1702290‑1702153

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.