New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 80103776 (0.860)4 (0.080)
+GGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGTGT		 3/160 10.2 7.5% intergenic (+171/‑180) hisC1/USA300HOU_0748 histidinol‑phosphate transaminase/hypothetical protein
?CP000730 = 2031785 95 (1.080)coding (51/291 nt) USA300HOU_1886 hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/800993‑801037
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAG  <  CP000730/2031785‑2031736
                                             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                                                  
CTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGTGTGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTA               >  1:108559/1‑141
  AGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGTGTGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACA             >  1:938837/1‑141
     ATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGTGTGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGAC          >  1:802386/1‑141
            AAAGCTTATTACAAGCGCATTTTCGTTCAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGCG‑GGGCCCTAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAG  >  1:528427/1‑141
                                                                  TCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGT                                                      >  1:222128/1‑36
                                                                  TCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGT                                                      <  2:222128/36‑1
                                             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                                                  
CTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/800993‑801037
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAG  <  CP000730/2031785‑2031736

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.