New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1040370	23 (0.610)	5 (0.150)	4/250	5.1	19.7%	intergenic (‑6787/‑919)	USA300HOU_0983/USA300HOU_0984	competence protein/glycosyltransferase
	?	CP000730	= 1040397	20 (0.590)					intergenic (‑6814/‑892)	USA300HOU_0983/USA300HOU_0984	competence protein/glycosyltransferase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GATTTTAGCAACACATGATATGGCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/1040252‑1040370 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaaagccaatcaaACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTCTATACTGTTCTAAATCTATTATTTCGTCACATTGATTTGCAATAGCCATATCATGTGTT  <  CP000730/1040397‑1040261                                                                                                                                                                                                                                                                  GATTTTAGCAACACATGATATGGCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATT                                                                                                                     >  2:75959/1‑141       AGCAACACATGATATGGCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCAT                                                                                                               <  1:232240/141‑1        GCAACACATGATATGGCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATT                                                                                                              <  1:75959/141‑1        GCAACACATGATATGGCTATTGCAAATCAATGTGAAGAAATAATAGATTTAGAAAAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATT                                                                                                              <  2:233131/141‑1            aACATGATATGGCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATT                                                                                                          <  2:51322/140‑1                                                                                                                   ATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTCTATACTGTTCTAAATCTATTATTTCGTCACATTGATTTGCAATAGCCATATCATGTGT   <  1:135185/141‑1                                                                                                                    TCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTCTATACTGTTCTAAATCTATTATTTCGTCACATTGATTTGCAATAGCCATATCATGTGTT  >  1:180784/1‑141                                                                                                                    TCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTCTATACTGTTCTAAATCTATTATTTCGTCACATTGATTTGCAATAGCCATATCATGTGTT  >  1:180846/1‑141                                                                                                                    TCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTCTATACTGTTCTAAATCTATTATTTCGTCACATTGATTTGCAATAGCCATATCATGTGTT  <  2:186677/141‑1                                                                                                                                                                                                                                                                  GATTTTAGCAACACATGATATGGCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/1040252‑1040370 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaaagccaatcaaACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTAATTTTATCTTTTGGATATCACATAGATGCTACTTTTCTATACTGTTCTAAATCTATTATTTCGTCACATTGATTTGCAATAGCCATATCATGTGTT  <  CP000730/1040397‑1040261

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.