New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2687471 =	58 (1.540)	3 (0.090)	3/256	5.8	5.4%	intergenic (+25/+44)	clp/USA300HOU_2543	S14 family endopeptidase Clp/hypothetical protein
	?	CP000730	2687511 =	52 (1.500)					intergenic (+65/+4)	clp/USA300HOU_2543	S14 family endopeptidase Clp/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TAAAATTTTTCAAGCGTTCAAAACAAGGAAAATGTGGTACATGTGACATTAATCGTGATTGTTGTGGAACAGAACAGCACACAGCGAATCATTTTCCAGGGAAATAATTAAAAAAATGAGCACAGGCAAGGGCGACCTGATGCTCATTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2687621‑2687471 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctcatttttTTAATTATTTCCCTGGAAAATGATTCGCTGTGTGCTGTTCTGTTCCACAACAATCACGATTAATGTCACATGTACCACATTTTCCTTGTTTTGAACGCTTGAAAAATTTTACTAGTGTATATAAGGCATATCC  >  CP000730/2687511‑2687643                                                                                                                                                                                                                                                                                              TAAAATTTTTCAAGCGTTCAAAACAAGGAAAATGTGGTACATGTGGCATTAATCGTGATTGTTGTGGAACAGAACAGCACAAAGAGAAACATTTTCCAGGGAAAGAATTAAAAAAATGAGCACAGGCAAGGGCGACCTGAT                                                                                                                                                 <  2:275995/141‑1   AAATTTTTCAAGCGTTCAAAACAAGGAAAATGTGGTACATGTGACATTAATCGTGATTGTTGTGGAACAGAACAGCACACAGCGAATCATTTTCCAGGGAAATAATTAAAAAAATGAGCACAGGCAAGGGCGACCTGATGC                                                                                                                                               <  1:242514/141‑1     ATTTTTCAAGCGTTCAAAACAAGGAAAATGTGGTACATGTGACATTAATCGTGATTGTTGTGGAACAGAACAGCACACAGCGAATCATTTTCCAGGGAAATAATTAAAAAAATGAGCACAGGCAAGGGCGACCTGATGCTC                                                                                                                                             >  2:311112/1‑141     ATTTTTCAAGCGTTCAAAACAAGGAAAATGTGGTACATGTGACATTAATCGTGATTGTTGTGGAACAGAACAGCACACAGCGAATCATTTTCCAGGGAAATAATTAAAAAAATGAGCACAGGCAAGGGCGACCTGATGCTC                                                                                                                                             >  2:310693/1‑141        TTTCAAGCGTTCAAAACAAGGAAAATGTGGTACATGTGACATTAATCGTGATTGTTGTGGAACAGAACAGCACACAGCGAATCATTTTCCAGGGAAATAATTAAAAAAATGAGCACAGGCAAGGGCGACCTGATGCTCATT                                                                                                                                          <  2:233048/141‑1                                                                                                                     TGAGCACAGGCAAGGGCGACCTGATGCTCATTTTTTTAATTATTTCCCTGGAAAATGATTCGCTGTGTGCTGTTCTGTTCCACAACAATCACGATTAATGTCACATGTACCACATTTTCCTTGTTTTGAACGCTTGAAAAA                             >  2:355902/1‑141                                                                                                                         CACAGGCAAGGGCGACCTGATGCTCATTTTTTTAATTATTTCCCTGGAAAATGATTCGCTGTGTGCTGTTCTGTTCCACAACAATC                                                                                >  2:284765/1‑86                                                                                                                         CACAGGCAAGGGCGACCTGATGCTCATTTTTTTAATTATTTCCCTGGAAAATGATTCGCTGTGTGCTGTTCTGTTCCACAACAATC                                                                                <  1:284765/86‑1                                                                                                                                                TCATTTTTTTAATTATTTCCCTGGAAAATGATTCGCTGTGTGCTGTTCTGTTCCACAACAATCACGATTAATGTCACATGTACCACATTTTCCTTGTTTTGAACGCTTGAAAAATTTTACTAGTGTATATAAGGCATATCC  <  1:362038/141‑1                                                                                                                                                                                                                                                                                              TAAAATTTTTCAAGCGTTCAAAACAAGGAAAATGTGGTACATGTGACATTAATCGTGATTGTTGTGGAACAGAACAGCACACAGCGAATCATTTTCCAGGGAAATAATTAAAAAAATGAGCACAGGCAAGGGCGACCTGATGCTCATTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2687621‑2687471 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctcatttttTTAATTATTTCCCTGGAAAATGATTCGCTGTGTGCTGTTCTGTTCCACAACAATCACGATTAATGTCACATGTACCACATTTTCCTTGTTTTGAACGCTTGAAAAATTTTACTAGTGTATATAAGGCATATCC  >  CP000730/2687511‑2687643

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.