New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2001795 =	NA (NA)	11 (0.320)	7/258	3.9	NA	intergenic (‑18/+79)	USA300HOU_t0052/rrs3	tRNA‑Ile/16S ribosomal RNA
	?	CP000730	2179784 =	NA (NA)					intergenic (‑228/+84)	rrl4/rrs4	23S ribosomal RNA/16S ribosomal RNA
Rejected: Coverage evenness skew score above cutoff.

CGCTCTCCCAGCTGAGCTAAGCCCCCAAATAGGTATTAAATTAATGGTGGGCCTAAGTGGACTCGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCAGCCGCACCTTCCGATACGGCTACCTTGTTACGACTTCACCCCAATCATT  >  CP000730/2001657‑2001932                                                                                                                                           |                                                                                                                                          cgcTCTCCCAGCTGAGCTAAGCCCCCAAATAGGTATTAAATTAATGGTGGGCCTAAGTGGACTCGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGaacaaac                                                                                                                                         <  1:293482/141‑1 (MQ=255) cgcTCTCCCAGCTGAGCTAAGCCCCCAAATAGGTATTAAATTAATGGTGGGCCTAAGTGGACTCGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGaacaaac                                                                                                                                         >  1:329003/1‑141 (MQ=255)  gcTCTCCCAGCTGAGCTAAGCCCCCAAATAGGTATTAAATTAATGGTGGGCCTAAGTGGACTCGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGaacaaaca                                                                                                                                        >  1:144935/1‑141 (MQ=255)    tctcCCAGCTGAGCTAAGCCCCCAAATAGGTATTAAATTAATGGTGGGCCTAAGTGGACTCGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACAtt                                                                                                                                      <  1:181873/141‑1 (MQ=255)    tctcCCAGCTGAGCTAAGCCCCCAAATAGGTATTAAATTAATGGTGGGCCTAAGTGGACTCGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACAtt                                                                                                                                      <  1:232346/141‑1 (MQ=255)          aGCTGAGCTAAGCCCCCAAATAGGTATTAAATTAATGGTGGGCCTAAGTGGACTCGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAAc                                                                                                                                <  1:257154/141‑1 (MQ=255)           gCTGAGCTAAGCCCCCAAATAGGTATTAAATTAATGGTGGGCCTAAGTGGACTCGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACt                                                                                                                               >  2:386552/1‑141 (MQ=255)                       ccccAAATAGGTATTAAATTAATGGTGGGCCTAAGTGGACTCGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATg                                                                                                                   >  2:160848/1‑141 (MQ=255)                                 gTATTAAATTAATGGTGGGCCTAAGTGGACTCGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTAtt                                                                                                         <  2:138636/141‑1 (MQ=255)                                  tATTAAATTAATGGTGGGCCTAAGTGGACTCGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTc                                                                                                        >  1:35380/1‑141 (MQ=255)                                   attaaattaaTGGTGGGCCTAAGTGGCCTCGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTcc                                                                                                       <  2:100930/141‑1 (MQ=255)                                           aaTGGTGGGCCTAAGTGGACTCGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCAtcttc                                                                                               <  1:167765/141‑1 (MQ=255)                                              ggtggGCCTAAGTGGACTCGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCAtcttcttc                                                                                            <  1:273102/141‑3 (MQ=255)                                                 gggCCTAAGTGGACTCGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTgaaga                                                                                         <  1:109027/141‑1 (MQ=255)                                                 gggCCTAAGTGGACTCGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTgaaga                                                                                         <  1:316132/141‑1 (MQ=255)                                                 gggCCTAAGTGGACTCGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTgaaga                                                                                         >  2:377511/1‑141 (MQ=255)                                                      tAAGTGGACTCGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATg                                                                                    >  2:58661/1‑141 (MQ=255)                                                              cTCGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAat                                                                            >  1:409891/1‑141 (MQ=255)                                                              cTCGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAat                                                                            >  1:409169/1‑141 (MQ=255)                                                                     caccGACCTCACGCTTATCAGGCGTGCGCACTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCt                                                                     <  1:88610/141‑1 (MQ=255)                                                                      accGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCtt                                                                    <  1:400737/141‑1 (MQ=255)                                                                          aCCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGaa                                                                >  2:89054/1‑141 (MQ=255)                                                                          aCCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGaa                                                                >  2:223070/1‑141 (MQ=255)                                                                          aCCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGaa                                                                >  1:74170/1‑141 (MQ=255)                                                                              cACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAagga                                                            >  2:190332/1‑141 (MQ=255)                                                                               aCGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAaggag                                                           >  2:295258/1‑141 (MQ=255)                                                                                 gCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGt                                                         >  1:128546/1‑141 (MQ=255)                                                                                  cctgataagCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTga                                                                                            <  1:1305/97‑1 (MQ=255)                                                                                  cctgataagCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTga                                                                                            >  2:1305/9‑105 (MQ=255)                                                                                     aTCATGCGTGCGCACGAACCAGCTCAGCTATAGGCGAATTAATTTGAATGAACAAACATTCAAAACGGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATc                                                     >  2:377383/1‑141 (MQ=14)                                                                                      tCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATcc                                                    >  1:412532/1‑141 (MQ=255)                                                                                          gCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCAGcc                                                >  2:171504/1‑141 (MQ=255)                                                                                                         aGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCAGCCGCACCTTCCGATACg                                 >  2:111539/1‑141 (MQ=255)                                                                                                         aGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCAGCCGCACCTTCCGATACg                                 >  1:110468/1‑141 (MQ=255)                                                                                                            tGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCAGCCGCACCTTCCGATACGGCt                              <  2:128546/141‑1 (MQ=255)                                                                                                              aGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCAGCCGCACCTTCCGATACGGCTAc                            >  1:420812/1‑141 (MQ=255)                                                                                                                 tataGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCAGCCGCACCTTCCGATACGGCTACCtt                         >  2:367691/1‑141 (MQ=255)                                                                                                                 tataGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCAGCCGCACCTTCCGATACGGCTACCtt                         >  2:257730/1‑141 (MQ=255)                                                                                                                 tataGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCAGCCGCACCTTCCGATACGGCTACCtt                         >  1:275879/1‑141 (MQ=255)                                                                                                                    aGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCAGCCGCACCTTCCGATACGGCTACCTTGtt                      <  1:41815/141‑1 (MQ=255)                                                                                                                     ggCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGGAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCAGCCGCACCTTCCGATACGGCTACCTTGTTa                     <  1:3762/141‑1 (MQ=255)                                                                                                                     ggCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCAGCCGCACCTTCCGATACGGCTACCTTGTTa                     >  1:23725/1‑141 (MQ=255)                                                                                                                       cccATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCAGCCGCACCTTCCGATACGGCTACCTTGTTACg                   <  2:412532/141‑1 (MQ=255)                                                                                                                           ttAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCAGCCGCACCTTCCGATACGGCTACCTTGTTACGACtt               <  2:75316/141‑1 (MQ=255)                                                                                                                           ttAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCAGCCGCACCTTCCGATACGGCTACCTTGTTACGACtt               <  2:295147/141‑1 (MQ=255)                                                                                                                             aaTTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCAGCCGCACCTTCCGATACGGCTACCTTGTTACGACTTCa             <  1:269143/141‑1 (MQ=40)                                                                                                                              aTTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCAGCCGCACCTTCCGATACGGCTACCTTGTTACGACTTCAc            <  2:410383/141‑1 (MQ=39)                                                                                                                               tttGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCAGCCGCACCTTCCGATACGGCTACCTTGTTACGACTTCAcc           >  1:351620/1‑141 (MQ=38)                                                                                                                               tttGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCAGCCGCACCTTCCGATACGGCTACCTTGTTACGACTTCAcc           >  2:364605/1‑141 (MQ=38)                                                                                                                                       aacaaacaTTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCAGCCGCACCTTCCGATACGGCTACCTTGTTACGACTTCACCCCAATCAt   >  2:387506/1‑141 (MQ=32)                                                                                                                                        acaaacaTTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCAGCCGCACCTTCCGATACGGCTACCTTATTACGACTTCACCCCAATCAtt  >  1:349781/1‑141 (MQ=14)                                                                                                                                           |                                                                                                                                          CGCTCTCCCAGCTGAGCTAAGCCCCCAAATAGGTATTAAATTAATGGTGGGCCTAAGTGGACTCGAACCACCGACCTCACGCTTATCAGGCGTGCGCTCTAACCAGCTGAGCTATAGGCCCATTAATTTGAATGAACAAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCAGCCGCACCTTCCGATACGGCTACCTTGTTACGACTTCACCCCAATCATT  >  CP000730/2001657‑2001932

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.