New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP000730 | 37094 = | 73 (1.120) | 6 (0.100) | 5/238 | NT | 8.3% | coding (21/231 nt) | USA300HOU_0028 | hypothetical protein |
? | CP000730 | 37188 = | 65 (1.080) | coding (115/231 nt) | USA300HOU_0028 | hypothetical protein |
TCCTCTTATTAGTATAATCTCAGTAAGAATGCGTATAAAAATGAAAATTACAACCGATTTTGTAAGTGCTGACGCCTGAGGGAATAGTATGTGCGAGAGACTAATGGCTCGAGCCATACCCCTAGGCAAGCATGCACGTACAAAATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/37241‑37094 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacaaaatcgGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTCAGTAAAATTACAGATAAGAGGTACGT > CP000730/37188‑37325 TCCTCTTATCACTATAATCTCAGTAAAAAGGCATAGAAAAATGAAAATTACAACCGATGTTGTAAGTGCTGACGCCTGAGGGAATAGTATGTGCGAGAGACTAATGGCTCGAGCCATACCCCTAGGCAAGCATGCACGTAC < 1:28714/141‑1 CTTATTAGTATAATCTCAGTAAGAATGCGTATAAAAATGAAAATTACAACCGATTTTGTAAGTGCTGACGCCTGAGGGAATAGTATGTGCGAGAGACTAATGGCTCGAGCCATACCCCTAGGCAAGCATGCACGTACAAAA > 1:349867/1‑141 ACAACCGATTTTGTAAGTGCTGACGCCTGAGGGAATAGTATGTGCGAGAGACTAATGGCTCGAGCCATACCCCTAGGCAAGCATGCACGTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATA > 1:708787/1‑141 TAAGTGCTGACGCCTGAGGGAATAGTATGTGCGAGAGACTAATGGCTCGAGCCATACCCCTAGGCAAGCATGCACGTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAA > 1:67338/1‑141 AAGTGCTGACGCCTGAGGGAATAGTATGTGCGAGAGACTAATGGCTCGAGCCATACCCCTAGGCAAGCATGCACGTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAAT > 1:435584/1‑141 TGACGCCTGAGGGAATAGTATGTGCGAGAGACTAATGGCTCGAGCCATACCCCTAGGCAAGCATGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAA > 1:377236/1‑141 TGACGCCTGAGGGAATAGTATGTGCGAGAGACTAATGGCTCGAGCCATACCCCTAGGCAAGCATGCACGTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAA > 1:281547/1‑141 ACTAATGGCTCGAGCCATACCCCTAGGCAAGCATGCACGTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGATAAGAG < 2:563149/141‑1 TACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTCAGTAAAATTACAGATAAGA > 2:360343/1‑141 AAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTCAGTAAAATTACAGATAAGAGGT < 2:264559/141‑1 TCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTCAGTAAAATTACAGATAAGAGGTACGT < 2:264480/141‑1 TCCTCTTATTAGTATAATCTCAGTAAGAATGCGTATAAAAATGAAAATTACAACCGATTTTGTAAGTGCTGACGCCTGAGGGAATAGTATGTGCGAGAGACTAATGGCTCGAGCCATACCCCTAGGCAAGCATGCACGTACAAAATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/37241‑37094 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacaaaatcgGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTCAGTAAAATTACAGATAAGAGGTACGT > CP000730/37188‑37325 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |