| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 407101 | 66 (1.010) | 4 (0.070) | 4/234 | NT | 5.6% | intergenic (+16/+67) | atoB/USA300HOU_0376 | acetyl‑CoA C‑acetyltransferase/hypothetical protein |
| ? | CP000730 | = 407127 | 76 (1.280) | intergenic (+42/+41) | atoB/USA300HOU_0376 | acetyl‑CoA C‑acetyltransferase/hypothetical protein | |||||
CCTATTGGTGCATCTGGTGCTAGAGTATTAGTGACATTATTGCATCAACTGAATGATGAAGTTGAAACTGGTTTAACATCATTGTGTATTGGTGGCGGTCAAGCTATCGCTGCAGTTGTATCAAAGTATAAATAATAAGAAAACAGGTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/406951‑407101‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaacaggttatGCCAACATGTAATTAATACTGTTGTGATAACCTGTTTTCTTATTATTTATACTTTGATACAACTGCAGCGATAGCTTGACCGCCACCAATACACAATGATGTTAAACCAGTTTCAACTTCATCATTCAGTTGATGCAATA < CP000730/407127‑406988 CCTATTGGTGCATCTGGTGCTAGAGTATTAGTGACATTATTGCATCAACTGAATGATGAAGTTGAAACTGGTTTAACATCATTGTGTATTGGTGGCGGTCAAGCTATCGCTGCAGTTGTATCAAAGTATAAATAATAAGAA < 2:317804/141‑1CCTATTGGTGCATCTGGTGCTAGAGTATTAGTGACATTATTGCATCAACTGAATGATGAAGTTGAAACTGGTTTAACATCATTGTGTATTGGTGGCGGTCAAGCTATCGCTGCAGTTGTATCAAAGTATAAATAATAAGAA < 1:731806/141‑1 TTGGTGCATCTGGTGCTAGAGTATTAGTGACATTATTGCATCAACTGAATGATGAAGTTGAAACTGGTTTAACATCATTGTGTATTGGTGGCGGTCAAGCTATCGCTGCAGTTGTATCAAAGTATAAATAATAAGAAAACA < 2:124699/141‑1 TGCATCTGGTGCTAGAGTATTAGTGACATTATTGCATCAACTGAATGATGAAGTTGAAACTGGTTTAACATCATTGTGTATTGGTGGCGGTCAAGCTATCGCTGCAGTTGTATCAAAGTATAAATAATAAGAAAACAGGTT > 2:427131/1‑141 TGCATCTGGTGCTAGAGTATTAGTGACATTATTGCATCAACTGAATGATGAAGTTGAAACTGGTTTAACATCATTGTGTATTGGTGGCGGTCAAGCTATCGCTGCAGTTGTATCAAAGTATAAATAATAAGAAAACAGGTT < 1:761665/141‑1 CATCTGGTGCTAGAGTATTAGTGACATTATTGCATCAACTGAATGATGAAGTTGAAACTGGTTTAACATCATTGTGTATTGGTGGCGGTCAAGCTATCGCTGCAGTTGTATCAAAGTATAAATAATAAGAAAACAGGTTAT > 2:597073/1‑141 CATCTGGGGCTAGAGTATTAGTGACATTATTGCATCAACTGAATGATGAAGTTGAAACTGGTTTAACATCATTGTGTATTGGTGGCGGTCAAGCTATCGCTGCAGTTGTATCAAAGTATAAATAATAAGAAAACAGGTTAT < 1:141633/141‑1 AGTGACATTATTGCATCAACTGAATGATGAAGTTGAAACTGGTTTAACATCATTGTGTATTGGTGGCGGTCAAGCTATCGCTGCAGTTGTATCAAAGTATAAATAATAAGAAAACAGGTTATGCCAACATGTAATTAATAC > 1:764752/1‑141 CATTATTGCATCAACTGAATGATGAAGTTGAAACTGGTTTAACATCATTGTGTATTGGTGGCGGTCAAGCTATCGCTGCAGTTGTATCAAAGTATAAATAATAAGAAAACAGGTTATGCCAACATGTAATTAATACTGTTG < 2:526188/141‑1 TTGCATCAACTGAATGATGAAGTTGAAACTGGTTTAACATCATTGTGTATTGGTGGCGGTCAAGCTATCGCTGCAGTTGTATCAAAGTATAAATAATAAGAAAACAGGTTATGCCAACATGTAATTAATACTGTTGTGATA < 1:578108/141‑1 TCAACTGAATGATGAAGTTGAAACTGGTTTAACATCATTGTGTATTGGTGGCGGTCAAGCTATCGCTGCAGTTGTATCAAAGTATAAATAATAAGAAAACAGGTTATGCCAACATGTAATTAATACTGTTGTGATAACCTG < 2:764752/141‑1 AAACAGGTTATGCCAACATGTAATTAATACTGTTGTGATAACCTGTTTTCTTATTATTTATACTTTGATACAACTGCAGCGATAGCTTGACCGCCACCAATACACAATGATGTTAAACCAGTTTCAACTTCATCATTCAGT > 1:242429/1‑141 AACAGGTTATGCCAACATGTAATTAATACTGTTGTGATAACCTGTTTTCTTATTATTTATACTTTGATACAACTGCAGCGATAGCTTTACCGCCACCAATACACAATGATGTTAAACCAGTTTCAACTTCATCATTCAGTT < 1:411032/141‑1 CAGGTTATGCCAACATGTAATTAATACTGTTGTGATAACCTGTTTTCTTATTATTTATACTTTGATACAACTGCAGCGATAGCTTGACCGCCACCAATACACAATGATGTTAAACCAGTTTCAACTTCATCATTCAGTTGA > 1:145512/1‑141 TTATGCCAACATGTAATTAATACTGTTGTGATAACCTGTTTTCTTATTATTTATACTTTGATACAACTGCAGCGATAGCTTGACCGCCACCAATACCCAATGATGTTAAACCAGTTTCAACTTCATCATTCAGTTGATGCA < 2:514624/141‑1 ATGCCAACATGTAATTAATACTGTTGTGATAACCTGTTTTCTTATTATTTATACTTTGATACAACTGCAGCGATAGCTTGACCGCCACCAATACACAATGATGTTAAACCAGTTTCAACTTCATCATTCAGTTGATGCAAT > 1:512343/1‑141 TGCCAACATGTAATTAATACTGTTGTGATAACCTGTTTTCTTATTATTTATACTTTGATACAACTGCAGCGATAGCTTGACCGCCACCAATACACAATGATGTTAAACCAGTTTCAACTTCATCATTCAGTTGATGCAATA > 2:713435/1‑141 CCTATTGGTGCATCTGGTGCTAGAGTATTAGTGACATTATTGCATCAACTGAATGATGAAGTTGAAACTGGTTTAACATCATTGTGTATTGGTGGCGGTCAAGCTATCGCTGCAGTTGTATCAAAGTATAAATAATAAGAAAACAGGTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/406951‑407101‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaacaggttatGCCAACATGTAATTAATACTGTTGTGATAACCTGTTTTCTTATTATTTATACTTTGATACAACTGCAGCGATAGCTTGACCGCCACCAATACACAATGATGTTAAACCAGTTTCAACTTCATCATTCAGTTGATGCAATA < CP000730/407127‑406988 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |