New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 885389	59 (0.900)	4 (0.070)	4/232	NT	6.7%	intergenic (+18/+55)	gpmA1/yisU	phosphoglycerate mutase/LysE family L‑lysine exporter
	?	CP000730	= 885408	58 (0.990)					intergenic (+37/+36)	gpmA1/yisU	phosphoglycerate mutase/LysE family L‑lysine exporter

TGGGAGTATTTTTAAGATATTGCCTTAAACTAGATGAAGCATTAAAGCATAATATCGGTAATTGTAATATCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/885238‑885389 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagcgttatacaAAAGACATACTTGTGTC‑TATGTATAACGCTTTATTTATTATAAATTTGGATCAATTAACTCAACAAATTTAAATGTTCCATTGTCATATTCAAATTTCAGGATATTACAATTACCGATATTATGCTTTAATGCTTCATCT  <  CP000730/885408‑885269                                                                                                                                                                                                                                                                                                       TGGGAGTATTTTTAAGATATTGCCTTAAACTAGATGAAGCATTAAAGCATAAGATCGGTAATTGTAATATCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAA                                                                                                                                                          <  2:308351/141‑1     AGTATTTTTAAGATATTGCCTTAAACTAGATGAAGCATTAAAGCATAATATCGGTAATTGTAATATCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCG                                                                                                                                                      <  2:362403/141‑1      GTATTTTTAAGATATTGCCTTAAACTAGATGAAGCATTAAAGCATAATATCGGTAATTGTAATATCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGT                                                                                                                                                     <  1:773222/141‑1       TATTTTTAAGATATTGCCTTAAACTAGATGAAGCATTAAAGCATAATATCGGTAATTGTAATATCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTT                                                                                                                                                    <  1:377497/141‑1          TTTTAAGATATTGCCTTAAACTAGATGAAGCATTAAAGCATAATATCGGTAATTGTAATATCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATA                                                                                                                                                 >  2:163921/1‑141            TTAAGATATTGCCTTAAACTAGATGAAGCATTAAAGCATAATATCGGTAATTGTAATATCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACA                                                                                                                                               <  1:683516/141‑1            TTAAGATATTGCCTTAAACTAGATGAAGCATTAAAGCATAATATCGGTAATTGTAATATCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACA                                                                                                                                               >  1:488325/1‑141                                        CATTAAAGCATAATATCGGTAATTGTAATATCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACAAAAGACATACTTGTGTC‑TATGTATAACG                                                                                                                  <  2:129616/141‑1                                                                                                         TTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACAAAAGACATACTTGTGTC‑T                                                                                                                            <  1:426015/66‑1                                                                                                         TTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACAAAAGACATACTTGTGTC‑T                                                                                                                            >  2:426015/1‑66                                                                                                                                   ATAATAAATAAAGCGTTATAC‑ATAGACACAAGTATGTCTTTTGTATAACGCTTTATTTATTATAAATTTGGATCAATTAACTCAACAAATTTAAATGTTCCATTGTCATATTCAAATTTCAGGATATTACAATTACCGATA                       >  2:130725/1‑141                                                                                                                                             AAGCGTTATACAAAAGACATACTTGTGTC‑TATGTATAACGCTTTATTTATTATAAATTTGGATCAATTAACTCAACAAATTTAAATGTTCCATTGTCATATTCAAATTTCAGGATATTACAATTACCGATATTATGCTTTA             >  2:605912/1‑141                                                                                                                                                CGTTATACAAAAGACATACTTGTGTC‑TATGTATAACGCTTTATTTATTATAAATTTGGATCAATTAACTCAACAAATTTAAATGTTCCATTGTCATATTCAAATTTCAGGATATTACAATTACCGATATTATGCTTTAATG          <  1:264738/141‑1                                                                                                                                                 GTTATACAAAAGACATACTTGTGTC‑TATGTATAACGCTTTATTTATTATAAATTTGGATCAATTAACTCAACAAATTTAAATGTTCCATTGTCATATTCAAATTTCAGGATATTACAATTACCGATATTATGCTTTAATGC         >  2:455794/1‑141                                                                                                                                                 GTTATACAAAAGACATACTTGTGTC‑TATGTATAACGCTTTATTTATTATAAATTTGGATCAATTAACTCAACAAATTTAAATGTTCCATTGTCATATTCAAATTTCAGGATATTACAATTACCGATATTATGCTTTAATGC         >  2:481881/1‑141                                                                                                                                                  TTATACAAAAGACATACTTGTGTC‑TATGTATAACGCTTTATTTATTATAAATTTGGATCAATTAACTCAACAAATTTAAATGTTCCATTGTCATATTCAAATTTCAGGATATTACAATTACCGATATTATGCTTTAATGCT        >  2:352270/1‑141                                                                                                                                                  TTATACAAAAGACATACTTGTGTC‑TATGTATAACGCTTTATTTATTATAAATTTGGATCAATTAACTCAACAAATTTAAATGTTCCATTGTCATATT                                                    >  1:710446/1‑97                                                                                                                                                  TTATACAAAAGACATACTTGTGTC‑TATGTATAACGCTTTATTTATTATAAATTTGGATCAATTAACTCAACAAATTTAAATGTTCCATTGTCATATT                                                    <  2:710446/97‑1                                                                                                                                                       CAAAAGACATACTTGTGTC‑TATGTATAACGCTTTATTTATTATAAATTTGGATCAATTAACTCAACAAATTTAAATGTTCCATTGTCATATTCAAATTTCAGGATATTACAATTACCGATATTATGCTTTAATGCTTCAcc   <  1:333971/141‑3                                                                                                                                                        AAAAGACATACTTGTGTC‑TATGTATAACGCTTTATTTATTATAAATTTGGATCAATTAACTCAACAAATTTAAATGTTCCATTGTCATATTCAAATTTCAGGATATTACAATTACCGATATTATGCTTTAATGCTTCATCT  <  2:394909/141‑1                                                                                                                                                                                                                                                                                                       TGGGAGTATTTTTAAGATATTGCCTTAAACTAGATGAAGCATTAAAGCATAATATCGGTAATTGTAATATCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/885238‑885389 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagcgttatacaAAAGACATACTTGTGTC‑TATGTATAACGCTTTATTTATTATAAATTTGGATCAATTAACTCAACAAATTTAAATGTTCCATTGTCATATTCAAATTTCAGGATATTACAATTACCGATATTATGCTTTAATGCTTCATCT  <  CP000730/885408‑885269

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.