| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 1117307 | 39 (0.600) | 4 (0.070) | 4/228 | NT | 9.9% | intergenic (+3093/‑427) | USA300HOU_1046/typA | hypothetical protein/GTP‑binding protein TypA |
| ? | CP000730 | = 1117325 | 38 (0.660) | intergenic (+3111/‑409) | USA300HOU_1046/typA | hypothetical protein/GTP‑binding protein TypA | |||||
ACAATTAGTGGTCCAAATTCAATCTTAGTTGGAAATCGTGGTCTCCATCAAGAAATTAGCAATGATTATTTAGAGCCCCACCATGATGCGTTAATACAATTACATGAACAACGATTTAAAAGAAAATCAAAATAATTACCAAAAGCGTAATATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1117153‑1117307‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagcgtaatatgt‑TACCTAATTGTTAGGACTACATATTACGCTTTTGGTAATTATTTTGATTTTCTTTTAAATCGTTGTTCATGTAATTGTATTAACGCATCATGGTGGGGCTCTAAATAATCATTGCTAATTTCTTGATGGAGACCACGAT < CP000730/1117325‑1117187 ACAATTAGTGGTCCAAATTCAATCTTAGTTGGAAATCGTGGTCTCCATCAAGAAATTAGCAATGATTATTTAGAGCCCCACCATGATGCGTTAATACAATTACATGAACAACGATTTAAAAGAAAATCAAAATAATTACCA > 2:746574/1‑141 TTAGTGGTCCAAATTCAATCTTAGTTGGAAATCGTGGTCTCCATCAAGAAATTAGCAATGATTATTTAGAGCCCCACCATGATGCGTTAATACAATTACATGAACAACGATTTAAAAGAAAATCAAAATAATTACCAAAAG > 1:37133/1‑141 AGTGGTCCAAATTCAATCTTAGTTGGAAATCGTGGTCTCCATCAAGAAATTAGCAATGATTATTTAGAGCCCCACCATGATGCGTTAATACAATTACATGAACAACGATTTAAAAGAAAATCAAAATAATTACCAAAAGCG < 2:641785/141‑1 GGTCCAAATTCAATCTTAGTTGGAAATCGTGGTCTCCATCAAGAAATTAGCAATGATTATTTAGAGCCCCACCATGATGCGTTAATACAATTACATGAACAACGATTTAAAAGAAAATCAAAATAATTACCAAAAGCGTAA < 1:77501/141‑1 AAATTCAATCTTAGTTGGAAATCGTGGTCTCCAGCAAGAAATTAGCAATGATTATTTAGAGCCCCACCATGATGCGTTAATACAATTACATGAACAACGATTTAAAAGAAAATCAAAATAATTACCAAAAGCGTAATATGT < 1:385304/141‑1 CGTGGTCTCCATCAAGAAATTAGCAATGATTATTTAGAGCCCCACCATGATGCGTTAATACAATTACATGAACAACGATTTAAAAGAAAATCAAAATAATTACCAAAAGCGNAATATGT‑TACCTNATTGTTAGGACTACAT < 1:475601/141‑1 GTGGTCTCCATCAAGAAATTAGCAATGATTATTCAGCGCCTCGCGAGGATGCGTTAATACAATTACAAGAACAACGATTTAAAAGAACATCAAAATAACTACCAAAAGCGTAATATGT‑TACCTAATTGTTAGGACTACATA < 2:37133/141‑1 TGCGTTAATACAATTACATGAACAACGATTTAAAAGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGG‑TAACATATTACGCTTTTGGTAATTATTTTGATTTTCTTTTAAATCGTTGTTCATGT > 2:765046/1‑141 AAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGG‑TAACATATTACGCTTTTGGTAATTATTTTGATTTTCTTTTAAATCGTTGTTCATGTAATTGTATTAACGCATCATGGTGGGGCTCTAAATAATCATTG > 1:205372/1‑141 AATATGT‑TACCTAATTGTTAGCACTACATATTACGCTTTTGGTAATTATTTTGCTCTTCTTTTCTATCGCTATTCATGTACTTGTATTAACGCATCATGGTGGGGCTCTAAATAATCATTGCTAATTTCTTGATGGAGACC < 1:664794/141‑1 ATATGT‑TACCTAATTGTTAGGACTACATATTACGCTTTTGGTAATTATTTTGATTTTCTTTTAAATCGTTGTTCATGTAATTGTATTAACGCATCATGGTGGGGCTCTAAATAATCATTGCTAATTTCTTGATGGAGACCA > 2:230288/1‑141 GT‑TACCTAATCGTTAGGACTACATATTACGCTTTTGGAAATTATTTTGATTTTCTTTTAAATCGTTGTTCATGTAATTTTATTAACGCATCTTGGTGGGGATCTATATAATCATTGCTAATTTCTTGATGGAGACCACGAT > 2:349431/1‑141 ACAATTAGTGGTCCAAATTCAATCTTAGTTGGAAATCGTGGTCTCCATCAAGAAATTAGCAATGATTATTTAGAGCCCCACCATGATGCGTTAATACAATTACATGAACAACGATTTAAAAGAAAATCAAAATAATTACCAAAAGCGTAATATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1117153‑1117307‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagcgtaatatgt‑TACCTAATTGTTAGGACTACATATTACGCTTTTGGTAATTATTTTGATTTTCTTTTAAATCGTTGTTCATGTAATTGTATTAACGCATCATGGTGGGGCTCTAAATAATCATTGCTAATTTCTTGATGGAGACCACGAT < CP000730/1117325‑1117187 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |