| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 1336678 | 48 (0.740) | 3 (0.050) | 3/240 | NT | 6.2% | coding (341/369 nt) | glnR | glutamate‑‑ammonia ligase repressor |
| ? | CP000730 | = 1336691 | 46 (0.760) | coding (354/369 nt) | glnR | glutamate‑‑ammonia ligase repressor | |||||
TTATTAGAAAAAGGATTTAATATCAAAGGGATTAAACAAATCATTTATGACTCACAAGAGCATTTAACAACAGATGAACAAGAGATAAGAAAAAAGATGATTGTAGATGCCACGCAAAAGCCTATTGGAGAAACTTTGCCAATAAATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1336530‑1336678‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aataaatcgGGATAAATCACCACGATTTATTG < CP000730/1336691‑1336669 TTATTAGAAAAAGGATTTAATATCAAACGGATTAAAAAAAACATTTATGACTCACAAGAGCATTTAACAACAGATGAAAAAGAAATAAGAAAAAAGATGATTGTAGATGCCACGCAAAAGCCTATTGGAGAAACTTTGCCA < 2:665142/141‑1 TATTAGAAAAAGGATTTAATATCAAAGGGATTAAACAAATCATTTATGACTCACAAGAGCATTTAACAACAGATGAACAAGAGATAAGAAAAAAGATGATTGTAGATGCCACGCAAAAGCCTATTGGAGAAACTTTGCCAA < 1:724419/141‑1 TATTAGAAAAAGGATTTAATATCAAAGGGATTAAACAAATCATTTATGACTCACAAGAGCATTTAACAACAGATGAACAAGAGATAAGAAAAAAGATGATTGTAGATGCCACGCAAAAGCCTATTGGAGAAACTTTGCCAA < 2:299007/141‑1 ATTAGAAAAAGGATTTAATATCAAAGGGATTAAACAAATCATTTATGACTCACAAGAGCATTTAACAACAGATGAACAAGAGATAAGAAAAAAGATGATTGTAGATGCCACGCAAAAGCCTATTGGAGAAACTTTGCCAAT > 2:533346/1‑141 TTAGAAAAAGGATTTAATATCAAAGGGATTAAACAAATCATTTATGACTCACAAGAGCATTTAACAACAGATGAACAAGAGATAAGAAAAAAGATGATTGTAGATGCCACGCAAAAGCCTATTGGAGAAACTTTGCCAATA < 2:542469/141‑1 AGAAAAAGGATTTAATATCAAAGGGATTAAACAAATCATTTATGACTCACAAGAGCATTTAACAACAGATGAACAAGAGATAAGAAAAAAGATGATTGTAGATGCCACGCAAAAGCCTATTGGAGAAACTTTGCCAATAAA < 2:730631/141‑1 AGAAAAAGGATTTAATATCAAAGGGATTAAACAAATCATTTATGACTCACAAGAGCATTAAACAACAGATGAACAAGAGATAAGAAAAAAGATGATTGTAGATGCCACGCAAAAGCCTATTGGAGAAACTTTGCCAATAAA > 1:430776/1‑141 GAAAAAGGATTTAATATCAAAGGGATTAAACAAATCATTTATGACTCACAAGAGCATTTAACAACAGATGAACAAGAGATAAGAAAAAAGATGATTGTAGATGCCACGCAAAAGCCTATTGGAGAAACTTTGCCAATAAAT < 1:301670/141‑1 GAAAAAGGATTTAATATCAAAGGGATTAAACAAATCATTTATGACTCACAAGAGCATTTAACAACAGATGAACAAGAGATAAGAAAAAAGATGATTGTAGATGCCACGCAAAAGCCTATTGGAGAAACTTTGCCAATAAAT > 2:504106/1‑141 AAAAGGATTTAATATCAAAGGGATTAAACAAATCATTTATGACTCACAAGAGCATTTAACAACAGATGAACAAGAGATAAGAAAAAAGATGATTGTAGATGCCACGCAAAAGCCTATTGGAGAAACTTTGCCAATAAATCG > 2:646611/1‑141 AGGGATTAAACAAATCATTTATGACTCACAAAAGCAATTAACAACAGAAGAACAAGAGATAAGAAAAAAGATGATTGTAGATGCCACGCAAAAGCCTATTGGAGAAACTTTGCCAATAAATCGGGATAAATCACCACGATT < 2:425867/141‑1 GATGATTGTAGATGCCACGCAAAAGCCTATTGGAGAAACTTTGCCAATAAATCGGGATAAATCACCACGATTTATTG > 2:609985/1‑77 GATGATTGTAGATGCCACGCAAAAGCCTATTGGAGAAACTTTGCCAATAAATCGGGATAAATCACCACGATTTATTG < 1:609985/77‑1 TTATTAGAAAAAGGATTTAATATCAAAGGGATTAAACAAATCATTTATGACTCACAAGAGCATTTAACAACAGATGAACAAGAGATAAGAAAAAAGATGATTGTAGATGCCACGCAAAAGCCTATTGGAGAAACTTTGCCAATAAATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1336530‑1336678‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aataaatcgGGATAAATCACCACGATTTATTG < CP000730/1336691‑1336669 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |