| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 1373632 = | 57 (0.870) | 3 (0.050) | 3/236 | NT | 5.7% | intergenic (+653/‑1242) | yneF/sbcC | hypothetical protein/exodeoxyribonuclease SbcC |
| ? | CP000730 | 1373681 = | 47 (0.790) | intergenic (+702/‑1193) | yneF/sbcC | hypothetical protein/exodeoxyribonuclease SbcC | |||||
TAAGTGCCAGTCTGCTGTATGTATAATTTTCATTACTGCCTCCATATAGAACATTTGTTCGCTTTTATTTTAATATAATCATTTCACCTTTTCAAGTAAAATTAAAACCACTCATTGACTGATTTAGAAGTCGATCACAAGTGGTTTTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1373781‑1373632‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtggttttaaTTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAGTAATGAAAATTATACATACAGCAGACTGGCACTTAGGGAAAATATTAAATGGCAAACAGCTTTTAGAAGATCA > CP000730/1373681‑1373819 TAAGTGCCAGTCTGCTGTATGTATAATTTTCATTACTGCCTCCATATAGAACATTTGTTCGCTTTTATTTTAATATAATCATTTCACCTTTTCAAGTAAAATTAAAACCACTCATTGACTGATTTAGAAGTCGATCACAAG < 1:456688/141‑1TAAGTGCCAGTCTGCTGTATGTATAATTTTCATTACTGCCTCCATATAGAACATTTGTTCGCTTTTATTTTAATATAATCATCTCACCTTTTCAAATCACACCACAAATACTCCTTGACTGATTTCGCCGTCGAACACAAG > 1:747272/1‑141 AGTGCCAGTCTGCTGTATGTATAATTTTCATTACTGCCTCCATATAGAACATTTGTTCGCTTTTATTTTAATATAATCATTTCACCTTTTCAAGTAAAATTAAAACCACTCATTGACTGATTTAGAAGTCGATCACAAGTG < 2:252552/141‑1 GTGCCAGTCTGCTGTATGTATAATTTTCATTACTGCCTCCATATAGAACATTTGTTCGCTTTTATTTTAATATAATCATTTCACCTTTTCAAGTAAAATTAAAACCACTCATTGACTGATTTAGAAGTCGATCACAAGTGG > 2:724038/1‑141 CAGTCTGCTGTATGTATAATTTTCATTACTGCCTCCATATAGAACATTTGTCCGCTTTTATTTTAATATAATCATTTCACCTTTTCAAGTAAAATTAAAACCACTCATTGACTGATTTAGAAGTCGATCACAAGTGGTTTT < 1:741385/141‑1 AGTCTGCTGTATGTATAATTTTCATTACTGCCTCCATATAGAACATTTGTTCGCTTTTATTTTAATATAATCATTTCACCTTTTCAAGTAAAATTAAAACCACTCATTGACTGATTTAGAAGTCGATCACAAGTGGTTTTA > 1:24983/1‑141 TAAAACCACTCATTGACTGATTTAGAAGTCGATCACAAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAGTAATGAAAATTATACATACAGCAGACT > 1:104577/1‑141 AAAACCACTCATTGACTGATTTAGAAGTCGATCACAAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAGTAATGAAAATTATACATACAGCAGACTG > 1:487536/1‑141 CTCATTGACTGATTTAGAAGTCGATCACAAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAGTAATGAAAATTATACATACAGCAGACTGGCACTTA > 1:85576/1‑141 GTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAGTAATGAAAATTATACATACAGCAGACTGGCACTTAGGGAAAATATTAAATGGCAAACAGCTTTTA > 2:267395/1‑141 TGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAGTAATGAAAATTATACATACAGCAGACTGGCACTTAGGGAAAATATTAAATGGCAAACAGCTTTTAG > 2:772420/1‑141 GGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAGTAATGAAAATTATACATACAGCAGACTGGCACTTAGGGAAAATATTAAATGGCAAACAGCTTTTAGA > 1:220518/1‑141 TTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAGTAATGAAAATTATACATACAGCAGACTGGCACTTAGGGAAAATATTAAATGGCAAACAGCTTTTAGAAGA < 1:422627/141‑1 TTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAAGGTTCTATATGGGGGCAGTAATGAAAATTATACATACAGCAGACTGGCACTTAGGGAAAATATTAAGTGGCAAACAGCTGTTAGAAGA < 2:525658/141‑1 TAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCGGTAATGAAAATTATACATACAGCAGACTGGCACTTAGGGAAAATATTAAATGGCAAACAGCTTTTAGAAGATC > 2:37252/1‑141 AATTTTATTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAGTAATGAAAATTATACATACAGCAGACTGGCACTTAGGGAAAATATTAAATTGCAAACAGCTTTTAGAAGATCA < 2:251364/141‑1 AATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAGTAATGAAAATTATACATACAGCAGACTGGCACTTAGGGAAAATATTAAATGGCAAACAGCTTTTAGAAGATCA > 2:219576/1‑141 TAAGTGCCAGTCTGCTGTATGTATAATTTTCATTACTGCCTCCATATAGAACATTTGTTCGCTTTTATTTTAATATAATCATTTCACCTTTTCAAGTAAAATTAAAACCACTCATTGACTGATTTAGAAGTCGATCACAAGTGGTTTTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1373781‑1373632‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtggttttaaTTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAGTAATGAAAATTATACATACAGCAGACTGGCACTTAGGGAAAATATTAAATGGCAAACAGCTTTTAGAAGATCA > CP000730/1373681‑1373819 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |