New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2017687 =	67 (1.030)	3 (0.050)	3/248	NT	4.2%	coding (162/819 nt)	recX	hypothetical protein
	?	CP000730	2017716 =	73 (1.160)					coding (133/819 nt)	recX	hypothetical protein
Rejected: Frequency below/above cutoff threshold.

GAAGTTCAAAAGAAAAACAAAGAACGGTTTAATCTTTTTTTAGACGAACAATTTGAAATGGGTATAGATATTGATACATTAGTCAAATTTAATTTAAAAAAAGGGCAACAACTTGAAGCTGCTGACATGGCAG‑AGATTCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2017827‑2017687 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcaaGTTGTTGCCCTTTTTTTAAATTAAATTTGACTAATGTATCAATATCTATACCCATTTCAAATTGTTCGTCTAAAAAAAGATTAAACCGTTCTTTGTTTTTCTTTTGAACTTCTATTTTAGTAATCTTCGGCACTGGATCA  >  CP000730/2017716‑2017855                                                                                                                                                                                                                                                                                            aAAGTTCAAAAGAAAAACAAAGAACGGTGTAATCTTTTTTTAGACGAACAATTTGAAATGGGTATAGATATTGATACATTAGTCAAATTAAAATTAAAAAAAGGGCAACAACTTGAAGCTGCTGACATGGCAG‑AGATTCAA                                                                                                                                              <  2:233349/140‑1                    AAGAACGGTTTAATCTTTTTTTAGACGAACAATTTGAAATAGGTATAGATATTGATACATTAGTCAAATTTAATTTAAAAAAAGGGCAACAACTTGAATCT‑CTGCCATGTCAGCAGCTTCAAGTTGTTGCCCTTTTTTTAA                                                                                                                           <  2:12637/141‑1                                                                      ATTGATACATTAGTCAAATTTAATTTAAAAAAAGGGCAACAACTTGAATCT‑CTGCCATGTCAGCAGCTTCAAGTTGTTGCCCTTTTTTTAAATTAAATTTGACTAATGTATCAATATCTATACCCATTTCAAATTGTTCGT                                                                         <  1:245753/141‑1                                                                                                                         GCTGACATGGCAG‑AGATTCAAGTTGTTGCCCTTTTTTTAAATTAAATTTGACTAATGTATCAATATCTATACCCATTTCAAATTGTTCGTCTAAAAAAAGATTAAACCGTTCTTTGTTTTTCTTTTGAACTTCTATTTTAG                      >  2:332172/1‑141                                                                                                                                             AAGTTGTTGCCCTTTTTTTAAATTAAATTTGACTAATGTATCAATATCTATACCCATTTCAAATTGTTCGTCTAAAAAAAGATTAAACCGTTCTTTGTTTTTCTTTTGAACTTCTATTTTAGTAATCTTCGGCACTGGATC   <  2:465204/141‑1                                                                                                                                              AGTTGTTGCCCTTTTTTTAAATTAAATTTGACTAATGTATCAATATCTATACCCATTTCAAATTGTTCGTCTAAAAAAAGATTAAACCGTTCTTTGTTTTTCTTTTGAACTTCTATTTTAGTAATCTTCGGCACTGGATCA  <  1:528410/141‑1                                                                                                                                              AGTTGTTGCCCTTTTTTTAAATTAAATTTGACTAATGTATCAATATCTATACCCATTTCAAATTGTTCGTCTAAAAAAAGATTAAACCGTTCTTTGTTTTTCTTTTGAACTTCTATTTTAGTAATCTTCGGCACTGGATCA  >  1:420029/1‑141                                                                                                                                                                                                                                                                                            GAAGTTCAAAAGAAAAACAAAGAACGGTTTAATCTTTTTTTAGACGAACAATTTGAAATGGGTATAGATATTGATACATTAGTCAAATTTAATTTAAAAAAAGGGCAACAACTTGAAGCTGCTGACATGGCAG‑AGATTCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2017827‑2017687 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcaaGTTGTTGCCCTTTTTTTAAATTAAATTTGACTAATGTATCAATATCTATACCCATTTCAAATTGTTCGTCTAAAAAAAGATTAAACCGTTCTTTGTTTTTCTTTTGAACTTCTATTTTAGTAATCTTCGGCACTGGATCA  >  CP000730/2017716‑2017855

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.