New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2367584 =	63 (0.970)	3 (0.050)	3/248	NT	4.8%	intergenic (‑701/+4857)	rpmC/pbuG	ribosomal protein L29/NCS2 family nucleobase:cation symporter‑2
	?	CP000730	2367607 =	59 (0.940)					intergenic (‑724/+4834)	rpmC/pbuG	ribosomal protein L29/NCS2 family nucleobase:cation symporter‑2
Rejected: Frequency below/above cutoff threshold.

GCGGTTCAGAAATCGAAAAATTACGCAACAAATTAAATGCGTTAACTGATAAAAAAGTACACATCAACGTAATTGAAATCAAAAAAGTTGATCTTGACGCTCGTTTAGTAGCTGAAAACATCGCACGTCAATTAGAAAACCGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2367728‑2367584 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtgcGATGTTTTCAGCTACTAAACGAGCGTCAAGATCAACTTTTTTGATTTCAATTACGTTGATGTGTACTTTTTTATCAGTTAACGCATTTAATTTGTTGCGTAATTTTTCGATTTCTGAACCGCCTTTACCAATTACCATA  >  CP000730/2367607‑2367745                                                                                                                                                                                                                                                                                              GCGGTTCAGAAATCGAAAAATTACGCAACAAATTAAATGCGTTAACTGAT‑AAAAAGTACACATCAACGTAATTGAAATCAAAAAAGTTGATCTTGACGCTCGTTTAGTAGCTGAAAACATCGCACGTCAATTAGAAAACCG                                                                                                                                                <  2:540561/141‑1    GTTCAGAAATCGAAAAATTACGCAACAAATTAAATGCGTTAACTGATAAAAAAGTACACATCAACGTAATTGAAATCAAAAAAGTTGATCTTGACGCTCGTTTAGTAGCTGAAAACATCGCACGTCAATCAGAAAACCGTG                                                                                                                                              >  1:740121/1‑141                                                                                                                               GTCAATTAGAAAACCGTGCGATGTTTTCAGCTACTAAACGAGCGTCAAGATCAACTTTTTT                                                                                                   >  1:492068/1‑61                                                                                                                               GTCAATTAGAAAACCGTGCGATGTTTTCAGCTACTAAACGAGCGTCAAGATCAACTTTTTT                                                                                                   <  2:492068/61‑1                                                                                                                                TCAATTAGAAAACCGTGCGATGTGTTCAGCTACTAAACGAGCGTCAAGATCAACTTTTTTGATTTCAATTACGTTGATGTGTACTTTTTTATCAGTTAACGCATTTAATTTGTTGCGTAATTTTTCGATTTCTGAACCGCC                  >  2:339983/1‑141                                                                                                                                             CGTGCGATGTTTTCAGCTACTAAACGAGCGTCAAGATCAACTTTTTTGATTTCAATTACGTTGATGTGTACTTTTTTATCAGTTAACGCATTTAATTTGTTGCGTAATTTTTCGATTT                            <  2:447771/118‑1                                                                                                                                             CGTGCGATGTTTTCAGCTACTAAACGAGCGTCAAGATCAACTTTTTTGATTTCAATTACGTTGATGTGTACTTTTTTATCAGTTAACGCATTTAATTTGTTGCGTAATTTTTCGATTT                            >  1:447771/1‑118                                                                                                                                              GTGCGATGTTTTCAGCTACTAAACGAGCGTCAAGATCAACTTTTTTGATTTCAATTACGTTGATGTGTACTTTTTTATCAGTTAACGCATTTAATTTGTTGCGTAATTTTTCGATTTCTGAACCGCCTTTACCAATTACCA    >  1:97155/1‑141                                                                                                                                               TGCGATGTTTTCAGCTACTAAACGAGCGTCAAGATCAACTTTTTTGTTTTTTTTTTCGTTGATGTGTACTTTTTTATCAGTTAACGCATTTAATTTGTTGCGTAATTTTTCGATTTCTGAACAACCTTTACAAATTACCAT   >  2:508904/1‑141                                                                                                                                               TGCGATGTTTTCAGCTACTAAACGAGCGTCAAGATCAACTTTTTTGATTTCAATTACGTTGATGTGTACTTTTTTATCAGTTAACGCATTTAATTTGTTGCGTAATTTTTTGATTTCTGAACCGCCTTTACCAATTACCAT   >  2:381820/1‑141                                                                                                                                               TGCGATGTTTTCAGCTACTAAACGAGCGTCAAGATCAACTTTTTTGATTTCAATTACGTTGATGTGTACTTTTTTATCAGTTAACGCATTTAATTTGTTGCGTAATTTTTCGATTTCTGAACCGCCTTTACCAATTACCAT   >  2:32811/1‑141                                                                                                                                                GCGATGTTTTCAGCTACTAAACGAGCGTCAAGATCAACTTTTTTGATTTCAATTACGTTGATGTGTACTTTTTTATCAGTTAACGCATTTAATTTGTTGCGTAATTTTTCGATTTCTGAACCGCCTTTACCAATTACCATA  >  2:31158/1‑141                                                                                                                                                GCGATGTTTTCAGCTACTAAACGAGCGTCAAGATCAACTTTTTTGATTTCAATTACGTTGATGTGTACTTTTTTATCAGTTAACGCATTTAATTTGTTGCGTAATTTTTCGATTTCTGAACCGCCTTTACCAATTACCATA  >  1:265701/1‑141                                                                                                                                                                                                                                                                                              GCGGTTCAGAAATCGAAAAATTACGCAACAAATTAAATGCGTTAACTGATAAAAAAGTACACATCAACGTAATTGAAATCAAAAAAGTTGATCTTGACGCTCGTTTAGTAGCTGAAAACATCGCACGTCAATTAGAAAACCGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2367728‑2367584 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtgcGATGTTTTCAGCTACTAAACGAGCGTCAAGATCAACTTTTTTGATTTCAATTACGTTGATGTGTACTTTTTTATCAGTTAACGCATTTAATTTGTTGCGTAATTTTTCGATTTCTGAACCGCCTTTACCAATTACCATA  >  CP000730/2367607‑2367745

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.