New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2464733	59 (0.900)	4 (0.070)	4/222	NT	7.1%	intergenic (+29/+19)	gltS/fni	ESS family glutamate:sodium (Na+) symporter/isopentenyl‑diphosphate delta‑isomerase
	?	CP000730	= 2464737	54 (0.960)					intergenic (+33/+15)	gltS/fni	ESS family glutamate:sodium (Na+) symporter/isopentenyl‑diphosphate delta‑isomerase

TTAGATGTTATTACTAAAAAATATGGAAACTCACCTAAAGCATATTTAGTTGTACCTATTGTTGGTGCATTCTTAATCGATTTAATTGGTGTTATAGTCATTATGGGATTCATACAATGGTTTAGTTAAACACCAAACTCATAAATAAAAGAGGAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2464576‑2464733 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataaataaaagaggaggcGAAGGCCTCCTCTTTTATTTATGAGTTTGGTGTTTAACTAAACCATTGTATGAATCCCATAATGACTATAACACCAATTAAATCGATTAAGAATGCACCAACAATAGGTACAACTAAATATGCTTTAGGTGAGTTTCCAT  <  CP000730/2464737‑2464598                                                                                                                                                                                                                                                                                                            TTAGATGTTATTACTAAAAAATATGGAAACTCACCTAAAGCATATTTAGTTGTACCTATTGTTGGTGCATTCTTAATCGATTTAATTGGTGTTATAGTCATTATGGGATTCATACAATGGTTTAGTTAAACACCAAACTCA                                                                                                                                                               <  2:111992/141‑1 TTAGATGTTATTACTAAAAAATATGGAAACTCACCTAAAGCATATTTAGTTGTACCTATTGTTGGTGCATTCTTAATCGATTTAATTGGTGTTATAGTCATTATGGGATTCATACAATGGTTTAGTTAAACACCAAACTCA                                                                                                                                                               >  2:350376/1‑141 TTAGATGTTATTACTAAAAAATATGGAAACTCACCTAAAGCATATTTAGTTGTACCTATTGTTGGTGCATTCTTAATCGATTTAATTGGTGTTATAGTCATTATGGGATTCATACAATGGTTTAGTTAAACACCAAACTCA                                                                                                                                                               <  1:534360/141‑1 TTAGATGTGATTACTAAAAAATATGGAAACTCACCTAAAGCATATTTAGTTGTACCTATTGTTGGTGCATGCTTAATCGATTTAATTGGTGTTATAGTCATTATGGGATTCATACAATGGTTTAGTTAAACACCAAACTCA                                                                                                                                                               <  1:534364/141‑1      TGTTATTACTAAAAAATATGGAAACTCACCTAAAGCATATTTAGTTGTACCTATTGTTGGTGCATTCTTAATCGATTTAATTGGTGTTATAGTCATTATGGGATTCATACAATGGTTTAGTTAAACACCAAACTCATAAAT                                                                                                                                                          <  2:274177/141‑1       GTTATTACTAAAAAATATGGAAACTCTCCTAAAGCATATTTAGTTGTACCTATTGTTGGTGCATTCTTAATCGATTTAATTGGTGTTATAGTCATTATGGGATTCATACAATGGTTTAGTTAAACACCAAACTCATAAATA                                                                                                                                                         <  2:621491/141‑1            TACTAAAAAATATGGAAACTCACCTAAAGCATATTTAGTTGTACCTATTGTTGGTGCATTCTTAATCGATTTAATTGGTGTTATAGTCATTATGGGATTCATACAATGGTTTAGTTAAACACCAAACTCATAAATAAAAGA                                                                                                                                                    >  1:17306/1‑141             ACTAAAAAATATGGAAACTCACCTAAAGCATATTTAGTTGTACCTATTGTTGGTGCATTCTTAATCGATTTAATTGGTGTTATAGTCATTATGGGATTCATACAATGGTTTAGTTAAACACCAAACTCATAAATAAAAGAG                                                                                                                                                   <  1:548463/141‑1                AAAAAATATGGAAACTCACCTAAAGCATATTTAGTTGTACCTATTGTTGGTGCATTCTTAATCGATTTAATTGGTGTTATAGTCATTATGGGATTCATACAATGGTTTAGTTAAACACCAAACTCATAAATAAAAGAGGAG                                                                                                                                                >  2:248383/1‑141                AAAAAATATGGAAACTCACCTAAAGCATATTTAGTTGTACCTATTGTTGGTGCATTCTTAATCGATTTAATTGGTGTTATAGTCATTATGGGATTCATACAATGGTTTAGTTAAACACCAAACTCATAAATAAAAGAGGAG                                                                                                                                                <  1:434878/141‑1                    AATATGGAAACTCACCTAAAGCATATTTAGTTGTACCTATTGTTGGTGCATTCTTAATCGATTTAATTGGTGTTATAGTCATTATGGGATTCATACAATGGTTTAGTTAAACACCAAACTCATAAATAAAAGAGGAGGCGA                                                                                                                                            <  1:389546/141‑1                       ataGAAGCTCACCTAAAGCATATTTAGTTGTACCTATTGTTGGTGCATTCTTAATCGATTTAATTGGTGTTATAGTCATTATGGGATTCATACAATGGTTTAGTTAAACACCAAACTCATAAATAAAAGAGGAGGCGAAGG                                                                                                                                         <  2:601609/138‑1                       ATGGAAACTCACCTAAAGCATATTTAGTTGTACCTATTGTTGGTGCATTCTTAATCGATTTAATTGGTGTTATAGTCATTATGGGATTCATACAATGGTTTAGTTAAACACCAAACTCATAAATAAAAGAGGAGGCGAAGG                                                                                                                                         <  1:80642/141‑1                         GGAAACTCACCTAAAGCATATGTAGTTGTACCTATTGTTGGTGCACTCTTAATCGATTTAATTGGTGTTATAGTCATTATGGGATTCATTCAATGGTTTAGTTAAACACCAAACTCATAAATAAAAGAGGAGGCGGAGGCC                                                                                                                                       <  1:133984/141‑1                                                                                                     TTATGGGATTCATACAATGGTTTAGTTAAACACCAAACTCATAAATAAAAGAGGAGGCCTTCGCCTCCTCTTTTATTTATGAGTTTGGTGTTTAACTAAACCATTGTATGAATCCCATAATGACTATAACACCAATTAAAT                                                           >  1:160871/1‑141                                                                                                              TCATACAATGGTTTAGTTAAACACCAAACTCATAAATAAAAGAGGAGGCCTTCGCCTCCTCTTTTATTTATGAGTTTGGTGTTTAACTAAACCATTTTATGAATCCAATAATGCCTATAACACCAATTAAATCTATTAAGA                                                  >  2:3091/1‑141                                                                                                                          TTAGTTAAACACCAAACTCATAAATAAAAGAGGAGGCCTTCGCCTCCTCTTTTATTTATGAGTTTGGTGTTTAACTAAACCATTGTATGAATCCCATAATGACTATAACACCAATTAAATCGATTAAGAATGCACCAACAA                                      >  2:58033/1‑141                                                                                                                                             ATAAATAAAAGAGGAGGCGAAGGCCTCCTCTTTTATTTATGAGTTTGGTGTTTAACTAAACCATTGTATGAATCCCATAATGACTATAACACCAATTAAATCGATTAAGAATGCACCAACAATAGGTACAACTAAATATGC                   <  2:146565/141‑1                                                                                                                                                AATAAAAGAGGAGGCGAAGGCCTCCTCTTTTATTTATGAGTTTGGTGTTTAACTAAACCATTGTATGAATCCCATAATGACTATAACACCAATTAAATCGATTAAGAATGCACCAACAATAGGTACAACTAAATATGCTTT                >  2:229873/1‑141                                                                                                                                                AATAAAAGAGGAGGCGAAGGCCTCCTCTTTTATTTATGAGTTTGGTGTTTAACTAAACCATTGTATGAATCCCATAATGACTATAACACCAATTAAATCGATTAAGAATGCACCAACAATAGGTACAACTAAATATGCTTT                >  1:13349/1‑141                                                                                                                                                AATAAAAGAGGAGGCGAAGGCCTCCTCTTTTATTTATGAGTTTGGTGTTTAACTAAACCATTGTATGAATCCCATAATGACTATAACACCAATTAAATCGATTAAGAATGCACCAACAATAGGACCAACTAAATATGCTgt                >  2:736458/1‑139                                                                                                                                                  TAAAAGAGGAGGCGAAGGCCTCCTCTTTTATTTATGAGTTTGGTGTTTAACTAAACCATTGTATGAATCCCATAATGACTATAACACCAATTAAATCGATTAAGAATGCACCAACAATAGGTACAACTAAATATGCTTTAG              <  2:25591/141‑1                                                                                                                                                  TAAAAGAGGAGGCGAAGGCCTCCTCTTTTATTTATGAGTTTGGTGTTTAACTAAACCATTGTATGAATCCCATAATGACTATAACACCAATTAAATCGATTAAGAATGCACCAACAATAGGTACAACTAAATATGCTTTAG              >  1:113476/1‑141                                                                                                                                                             GCGAAGGCCTCCTCTTTTATTTATGAGTTTGGTGTTTAACTAAACCATTGTATGAATCCCATAATGACTATAACACCAATTAAATCGATTAAGAATGCACCAACAATAGGTACAACTAAATATGCTTTAGGTGAGTTTCCA   <  2:14793/141‑1                                                                                                                                                             GCGAAGGCCTCCTCTTTTATTTATGAGTTTGGTGTTTAACTAAACCATTGTATGAATCCCATAATGACTATAACACCAATTAAATCGATTAAGAATGCACCAACAATAGGTACAACTAAATATGCTTTAGGTGAGTTTCCA   <  1:292764/141‑1                                                                                                                                                             GCGAAGGCCTCCTCTTTTATTTATGAGTTTGGTGTTTAACTAAACCATTGTATGAATCCCATAATGACTATAACACCAATTAAATCGATTAAGAATGCACCAACAATAGGTACAACTAAATATGCTTTAGGCGAGTTTCCA   <  1:395100/141‑1                                                                                                                                                              CGAAGGCCTCCTCTTTTATTTATGAGTTTGGTGTTTAACTAAACCATTGTATGAATCCCATAATGACTATAACACCAATTAAATCGATTAAGAATGCACCAACAATAGGTACAACTAAATATGCTTTAGGTGTGTTTCCAT  >  1:555272/1‑141                                                                                                                                                                                                                                                                                                            TTAGATGTTATTACTAAAAAATATGGAAACTCACCTAAAGCATATTTAGTTGTACCTATTGTTGGTGCATTCTTAATCGATTTAATTGGTGTTATAGTCATTATGGGATTCATACAATGGTTTAGTTAAACACCAAACTCATAAATAAAAGAGGAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2464576‑2464733 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataaataaaagaggaggcGAAGGCCTCCTCTTTTATTTATGAGTTTGGTGTTTAACTAAACCATTGTATGAATCCCATAATGACTATAACACCAATTAAATCGATTAAGAATGCACCAACAATAGGTACAACTAAATATGCTTTAGGTGAGTTTCCAT  <  CP000730/2464737‑2464598

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.