| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 2665976 = | 71 (1.090) | 3 (0.050) | 3/238 | NT | 5.0% | coding (476/900 nt) | sdhA2 | L‑serine ammonia‑lyase alpha subunit |
| ? | CP000730 | 2666008 = | 49 (0.810) | coding (444/900 nt) | sdhA2 | L‑serine ammonia‑lyase alpha subunit | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTATTTGTGCAACGCCAACAGCTGGTTCCTCGGGTACCATTCCCGGTGCACTTTTTAAATTAGAAAAAACACATGATTTAACAGAAGAGCAAATGATTGATTTCTTATTCACTTCAGCATTGTTTGGGCGTGTCGTAGCAAACAATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2666123‑2665976‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaacaatgcTGAAGTGAATAAGAAATCAATCATTTGCTCTTCTGTTAAATCATGTGTTTTTTCTAATTTAAAAAGTGCACCGGGAATGGTACCCGAGGAACCAGCTGTTGGCGTTGCACAAATAATACCCATCGCAGCATTGACTTCAT > CP000730/2666008‑2666147 TTATTTGTGCAACGCCAACAGCTGGTTCCTCGGGTACCATTCCCGGTGCACTTTTTAAATTAGAAAAAACACATGATTTAACAGAAGAGCAAATGATTGATTTCTTATTCACTTCAGCATTGTTTGGGCGTGTCGTAGCAA < 2:278862/141‑1TTATTTGTGCAACGACACGGCCTGGTTCCGCGGGTACCATTCCCGGTGCACTTTTTAAATTAGAAAAAACACATGATTTCACAGCAGAGCAAATGATTGATGTCTGATTCACGTCAGCATGGTTTGGGCGTGTCGTAGCAA > 2:786120/1‑141 TTGTGCAACGCCAACAGCTGGTTCCTCGGGTACCATTCCCGGTGCACTTTTTAAATTAGAAAAAACACATGATTTAACAGAAGAGCAAATGATTGATTTCTTATTCACTTCAGCATTGTTTGGGCGTGTCGTAGCAAACAA > 1:57265/1‑141 TGTGCAACGCCAACAGCTGGTTCCTCGGGTACCATTCCCGGTGCACTTTTTAAATTAGAAAAAACACATGATTTAACAGAAGAGCAAATGATTGATTTCTTATTCACTTCAGCATTGTTTGGGCGTGTCGTAGCAAACAAT > 1:713071/1‑141 GTGCAACGCCAACAGCTGGTTCCTCGGGTACCATTCCCGGTGCACTTTTTAAATTAGAAAAAACACATGATTTAACAGAAGAGCAAATGATTGATTTCTTATTCACTTCAGCATTGTTTGGGCGTGTCGTAGCAAACAATG > 2:156422/1‑141 TGCAACGCCAACAGCTGGTTCCTCGGGTACCATTCCCGGTGCACTTTTTAAATTAGAAAAAACACATGATTTAACAGAAGAGCAAATGATTGATTTCTTATTCACTTCAGCATTGTTTGGGCGTGTCGTAGCAAACAATGC > 1:762835/1‑141 TGCAACGCCAACAGCTGGTTCCTCGGGTACCATTCCCGGTGCACTTTTTAAATTAGAAAAAACACATGATTTAACAGAAGAGCAAATGATTGATTTCTTATTCACTTCAGCATTGTTTGGGCGTGTCGTAGCAAACAATGC < 2:195563/141‑1 taatGCCAACAGCTGGTTCCTCGGGTACCATTCCCGGTGCACTTTTTAAATTAGAGAAAACACATGATTTAACAGAAGAGCAAATGATTGATTTCTTATTCACTTCAGCATTGTTTGGGCGTGTCGTAGCAAACAATtcaa > 2:461174/5‑137 CCATTCCCGGTGCACTTTTTAAATTAGAAAAAACACATGATTTAACAGAAGAGCAAATGATTGATTTCTTATTCACTTCAGCATTGTTTGGGCGTGTCGTAGCAAACAATGCTGAAGTGAATAAGAAATCAATCATTTGCT > 1:680798/1‑141 TTGATTTCTTATTCACTTCAGCATTGTTTGGGCGTGTCGTAGCAAACAATGCTGAAGTGAATAAGAAATCAATCATTTGCTCTTCTGTTAAATCATGTGTATTTTCTAATTTAAAAATTGCACCGGGAATGGTCCCTGAGG > 2:142865/1‑141 GTTTGGGCGTGTCGTAGCAAACAATGCTGAAGTGAATAAGAAATCAATCATTTGCTCTTCTGTTAAATCATGTGTTTTTTCTAATTTAAAAAGTGCACCGGGAATGGTACCCGAGGAACCAGCTGTTGGCGTTGCACAAAT > 2:422808/1‑141 CAATGCTGAAGTGAATAAGAAATCAATCATTTGCTCTTCTGTTAAATCATGTGTTTTTTCTAATTTAAAAAGTGCACCGGGAATGGTACCCGAGGAACCAGCTGTTGGCGTTGCACAAATAATACCCATCGCAGCATTGAC < 1:417960/141‑1 TGCTGAAGTGAATAAGAAATCAATCATTTGCTCTTCTGTTAAATCATGTGTTTTTTCTAATTTAAAAAGTGCACCGGGAATGGTACCCGAGGAACCAGCTGTTGGCGTTGCACAAATAATACCCATCGCAGCATTGACTTC > 2:229345/1‑141 GCTGAAGTGAATAAGAAATCAATCATTTGCTCTTCTGTTAAATCATGTGTTTTTTCTAATTTAAAAAGTGCACCGGGAATGGTACCCGAGGAACCAGCTGTTGGCGTTGCACAAATAATACCCATCGCAGCATTGACTTCA < 2:17413/141‑1 CTGAAGTGAATAAGAAATCAATCATTTGCTCTTCTGTTAAATCATGTGTTTTTTCTAATTTAAAAAGTGCACCGGGAATGGTACCCGAGGAACCAGCTGTTGGCGTTGCACAAATAATACCCATCGCAGCATTGACTTCAT < 2:566568/141‑1 CTGAAGTGAATAAGAAATCAATCATTTGCTCTTCTGTTAAATCATGTGTTTTTTCTAATTTAAAAAGTGCACCGGGAATGGTACCCGAGGAACCAGCTGTTGGCGTTGCACAAATAATACCCATCGCAGCATTGACTTCAT < 1:291494/141‑1 TTATTTGTGCAACGCCAACAGCTGGTTCCTCGGGTACCATTCCCGGTGCACTTTTTAAATTAGAAAAAACACATGATTTAACAGAAGAGCAAATGATTGATTTCTTATTCACTTCAGCATTGTTTGGGCGTGTCGTAGCAAACAATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2666123‑2665976‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaacaatgcTGAAGTGAATAAGAAATCAATCATTTGCTCTTCTGTTAAATCATGTGTTTTTTCTAATTTAAAAAGTGCACCGGGAATGGTACCCGAGGAACCAGCTGTTGGCGTTGCACAAATAATACCCATCGCAGCATTGACTTCAT > CP000730/2666008‑2666147 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |