New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2303981 =	53 (0.810)	3 (0.050)	3/244	NT	5.7%	coding (1158/1188 nt)	USA300HOU_2162	UTP‑‑glucose‑1‑phosphate uridylyltransferase
	?	CP000730	2303997 =	49 (0.790)					coding (1142/1188 nt)	USA300HOU_2162	UTP‑‑glucose‑1‑phosphate uridylyltransferase

CATTACCAATTTCTTCTCCAAATGATAAAGGGATGATATCCTTAAATGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATGTCAAAATAGAACAATTCGAATTTTAAAGTTGGTT  >  CP000730/2303842‑2304120                                                                                                                                            |                                                                                                                                            ttggtgttattgaacaaccaactttaaaattcgaattgttctattttgacatatttacttatggaactagttttgtcacgttacaagttcctagagaagaagaattttcacctcttaaaaataaagaaggtaaagatagtg                                                                                                                                            >  1:611726‑M1/140‑141 (MQ=255)  tggtgttattgaacaaccaactttaaaattcgaattgttctattttgacatatttacttatggaactagttttgtcacgttacaagttcctagagaagaagaattttcacctcttacaaataaagaaggtaaagatagtgt                                                                                                                                           <  2:145733‑M1/3‑1 (MQ=255)   ttACCAATTTCTTCTCCAAATGATAAAGGGATGATATCCTTAAATGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTgtt                                                                                                                                          >  1:626039/1‑141 (MQ=255)           ttcttcTCCAAATGATAAAGGGATGATATCCTTAAATGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTgttgcagttgc                                                                                                                                  <  2:748434/141‑1 (MQ=255)           tgaacaaccaactttaaaattcgaattgttctattttgacatatttacttatggaactagttttgtcacgttacaagttcctagagaagaagaattttcacctcttaaaaataaagaaggtaaagatagTgttgcagttgc                                                                                                                                  >  2:334655‑M1/130‑141 (MQ=255)            tcttctCCAAATGATAAAGGGATGATATCCTTAAATGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTgttgcagttgca                                                                                                                                 <  1:92315/141‑1 (MQ=255)              ttctCCAAATGATAAAGGGATGATATCCTTAAATGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAac                                                                                                                               <  1:436025/141‑1 (MQ=255)                ctcCAAATGATAAAGGGATGATATCCTTAAATGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAacac                                                                                                                             <  2:11332/141‑1 (MQ=255)                ctcCAAATGATAAAGGGATGATATCCTTAAATGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAacac                                                                                                                             >  1:331166/1‑141 (MQ=255)                       tGATAAAGGGATGATATCCTTAAATGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCttt                                                                                                                      >  2:499775/1‑141 (MQ=255)                           aaaGGGATGATATCCTTAAATGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACct                                                                                                                  <  2:221354/141‑1 (MQ=255)                             aGGGATGATATCCTTAAATGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACcttc                                                                                                                >  1:310621/1‑141 (MQ=255)                             aGGGATGATATCCTTAAATGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACcttc                                                                                                                >  2:151618/1‑141 (MQ=255)                               ggATGATATCCTTAAATGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACcttctt                                                                                                              <  2:540688/141‑1 (MQ=255)                                 ataatatCCTTAAATGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTa                                                                                                            <  2:762589/138‑1 (MQ=255)                                  tgatATCCTTAAATGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTAt                                                                                                           <  1:188826/141‑1 (MQ=255)                                    atatCCTTAAATGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTAttt                                                                                                         <  1:429962/141‑1 (MQ=255)                                         cTTAAATGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAag                                                                                                    <  1:224413/141‑1 (MQ=255)                                            aaaTGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAgg                                                                                                 <  2:354677/141‑1 (MQ=255)                                               tGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACAGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGa                                                                                              <  2:355460/141‑1 (MQ=255)                                                 tttCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGaaa                                                                                            <  1:504310/141‑1 (MQ=255)                                                 tttCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGaaa                                                                                            <  2:748421/141‑1 (MQ=255)                                                   tCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAAt                                                                                          <  2:148281/141‑1 (MQ=255)                                                     tACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAAttc                                                                                        <  2:295021/141‑1 (MQ=255)                                                                cATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAg                                                                             <  2:440882/141‑1 (MQ=255)                                                                cATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAg                                                                             >  1:470349/1‑141 (MQ=255)                                                                 aTTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAGAATTCTTCTTCTCTAgg                                                                            >  1:292639/1‑141 (MQ=255)                                                                  ttACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGa                                                                           >  1:688732/1‑141 (MQ=255)                                                                      tttttttAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACtt                                                                       <  2:341344/141‑1 (MQ=255)                                                                       ttttttAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTg                                                                      <  2:683617/141‑1 (MQ=255)                                                                         ttttAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTa                                                                    <  2:279228/141‑1 (MQ=255)                                                                            tAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACg                                                                 >  2:95406/1‑141 (MQ=255)                                                                                tGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGAc                                                             <  2:517741/141‑1 (MQ=255)                                                                                 gATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACa                                                            <  1:594026/141‑1 (MQ=255)                                                                                  aTTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACaa                                                           <  1:27393/141‑1 (MQ=255)                                                                                   tttGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACaaa                                                          >  1:769008/1‑141 (MQ=255)                                                                                     tGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAAc                                                        <  1:137373/141‑1 (MQ=255)                                                                                     tGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAAc                                                        <  2:547584/141‑1 (MQ=255)                                                                                       gACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTa                                                      >  1:86705/1‑141 (MQ=255)                                                                                       gACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTa                                                      <  2:276750/141‑1 (MQ=255)                                                                                         tcctagagaagaagaattttcacctcttaaaaataaagaaggtaaagatagTGTTGCAACTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGt                                                    <  1:435086‑M1/90‑1 (MQ=255)                                                                                         catcatAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGt                                                    <  2:101868/141‑1 (MQ=255)                                                                                         catcatAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGt                                                    <  2:224586/141‑1 (MQ=255)                                                                                           tcatAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTc                                                  >  1:431824/1‑141 (MQ=255)                                                                                           tcatAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTc                                                  >  1:145452/1‑141 (MQ=255)                                                                                              gagaagaagaattttcacctcttaaaaataaagaaggtcaagatagTGTTGCAACTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCAt                                               <  1:415219‑M1/95‑1 (MQ=255)                                                                                               aGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATa                                              <  2:784256/141‑1 (MQ=255)                                                                                                   aCCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTCAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTa                                          >  2:556736/1‑141 (MQ=255)                                                                                                   aCCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTa                                          <  2:302633/141‑1 (MQ=255)                                                                                                        cTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAatat                                     <  2:626319/141‑1 (MQ=255)                                                                                                        cTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAatat                                     <  1:672883/141‑1 (MQ=255)                                                                                                         tATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATg                                    <  1:151618/141‑1 (MQ=255)                                                                                                         tATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATg                                    <  2:628789/141‑1 (MQ=255)                                                                                                                aaattaaaCCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGAGACAAAACTAGTTCCATAAGTAAATATGTCAAAAt                             <  2:44462/141‑1 (MQ=255)                                                                                                                  attaaaCCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATGTCAAAATAg                           >  1:524021/1‑141 (MQ=255)                                                                                                                     aaaCCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATGTCAAAATAGAAc                        <  1:255845/141‑1 (MQ=255)                                                                                                                       aCCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATGTCAAAATAGAACaa                      >  1:308737/1‑141 (MQ=255)                                                                                                                            ttCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATGTCAAAATAGAACAATTCGa                 >  2:153988/1‑141 (MQ=255)                                                                                                                            aagaaggtaaagatagTGTTGCAACTGCAACAGAAGATTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATGTCAAAATAGAACAATTCGa                 <  1:597517‑M1/125‑1 (MQ=255)                                                                                                                                aCGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATGTCAAAATAGAACAATTCGAAttt             >  2:387529/1‑141 (MQ=255)                                                                                                                                        cttctGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATGTCAAAATAGAACAATTCGAATTTTAAAgttg     <  2:74326/141‑1 (MQ=255)                                                                                                                                           tTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATGTCAAAATAGAACAATTCGAATTTTAAAgttggtt  >  2:684830‑M1/2‑141 (MQ=255)                                                                                                                                            |                                                                                                                                            CATTACCAATTTCTTCTCCAAATGATAAAGGGATGATATCCTTAAATGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATGTCAAAATAGAACAATTCGAATTTTAAAGTTGGTT  >  CP000730/2303842‑2304120

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.