New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2525159 =	61 (0.940)	3 (0.050)	3/246	NT	5.3%	coding (270/732 nt)	nirR	transcriptional regulator NirR
	?	CP000730	2525195 =	49 (0.790)					coding (234/732 nt)	nirR	transcriptional regulator NirR

TTAATATTGCCGTGTGCAACAACCATAACTCCAACTTGTTGTTCGTCACCTGCTAATGCGTCACAAATACGTTGTTCAATTAATCGTCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAACGTCGTCATTACCGTCTCTAAATCCTGA  >  CP000730/2525019‑2525297                                                                                                                                             |                                                                                                                                           ttAATATTGCCGTGTGCAACAACCATAACTCCAACTTGTTGTTCGTCACCTGCTAATGCGTCACAAATACGTTGTTCAATTAATCGTCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGa                                                                                                                                            <  1:499572/141‑1 (MQ=255) ttAATATTGCCGTGTGCAACAACCATAACTCCAACTTGTTGTTCGTCACCTGCTAATGCGTCACAAATACGTTGTTCAATTAATCGTCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGa                                                                                                                                            <  1:225076/141‑1 (MQ=255) ttAATATTGCCGTGTGCAACAACCATAACTCCAACTTGTTGTTCGTCACCTGCTAATGCGTCACAAATACGTTGTTCAATTAATCGTCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGa                                                                                                                                            >  1:754177/1‑141 (MQ=255)  acatcactatgatattgcgtttttagaaagtgagcatcaggatttagagacggtaatgacgacgttgattcaaagtggggttgaccattttaaaattgtaccattgctaatctttagtgcaatgcattatctcaaggatat                                                                                                                                           <  2:503852‑M1/2‑1 (MQ=255)    atcactatgatattgcgtttttagaaagtgagcatcaggatttagagacggtaatgacgacgttgattcaaagtggggttgaccattttaaaattgtaccattgctaatctttagtgcaatgcattatctcaaggatATAc                                                                                                                                         >  2:155134‑M1/138‑141 (MQ=255)    atcactatgatattgcgttgttagaaagtgaggatcaggatttagagacggtaatgacgacgttgattcaaagtggggttgaccattttaaaattgtaccattgctaatctttagtgcaatgcattatctcaaggatATAc                                                                                                                                         >  2:744497‑M1/138‑141 (MQ=255)      cactatgatattgcgtttttagaaagtgagcatcaggatttagagacggtaatgacgacgttgattcaaagtggggttgaccattttaaaattgtaccattgctaatctttagtgcaatgcattatctcaaggatATACcg                                                                                                                                       >  1:370086‑M1/136‑141 (MQ=255)         gCCGTGTGCAACAACCATAACTCCAACTTGTTGTTCGTCACCTGCTAATGCGTCACAAATACGTTGTTCAATTAATCGTCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACcgtcg                                                                                                                                    >  2:9002/1‑141 (MQ=255)         gCCGTGTGCAACAACCATAACTCCAACTTGTTGTTCGTCACCTGCTAATGCGTCACAAATACGTTGTTCAATTAATCGTCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACcgtcg                                                                                                                                    >  1:760404/1‑141 (MQ=255)              gtgCAACAACCATAACTCCAACTTGTTGTTCGTCACCTGCTAATGCGTCACAAATACGTTGTTCAATTAATCGTCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGtttca                                                                                                                               <  2:457494/141‑1 (MQ=255)               tgCAACAACCATAACTCCAACTTGTTGTTCGTCACCTGCTAATGCGTCACAAATACGTTGTTCAATTAATCGTCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGtttcat                                                                                                                              <  2:121403/141‑1 (MQ=255)                gCAACAACCATAACTCCACCTTGTTGTTCGTCACCTGCTAATGCGTCACAAATACGTTGTTCAATTAATCGTCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGCTACCGTCGtttcatt                                                                                                                             >  2:290718/1‑141 (MQ=255)                gCAACAACCATAACTCCAACTTGTTGTTCGTCACCTGCTAATGCGTCACAAATACGTTGTTCAATTAATCGTCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGtttcatt                                                                                                                             >  2:300513/1‑141 (MQ=255)                       ccATAACTCCAACTTGTTGTTCGTCACCTGCTAATGCGTCACAAATACGTTGTTCAATTAATCGTCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGaa                                                                                                                      >  2:248700/1‑141 (MQ=255)                        cATAACTCCAACTTGTTGTTCGTCACCTGCTAATGCGTCACAAATACGTTGTTCAATTAATCGTCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAAc                                                                                                                     <  1:220151/141‑1 (MQ=255)                        cATAACTCCAACTTGTTGTTCGTCACCTGCTAATGCGTCACAAATACGTTGTTCAATTAATCGTCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAAc                                                                                                                     >  1:188197/1‑141 (MQ=255)                        cATAACTCCAACTTGTTGTTCGTCACCTGCTAATGCGTCACAAATACGTTGTTCAATTAATCGTCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAAc                                                                                                                     <  2:672524/141‑1 (MQ=255)                         atatCTCCTACTTGTTGTTCGTCACCTGCTAATGCGTCACATTTTCGTTGTTCAATTAATTGTCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTTCCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACg                                                                                                                    <  2:463550/141‑1 (MQ=255)                          tAACTCCAACTTGTTGTTCGTCACCTGCTAATGCGTCACAAATACGTTGTTCAATTAATCGTCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGa                                                                                                                   <  1:712088/141‑1 (MQ=255)                           aaCTCCAACTTGTTGTTCGTCACCTGCTAATGCGTCACAAATACGTTGTTCAATTAATCGTCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGat                                                                                                                  >  2:653933/1‑141 (MQ=255)                                 aaCTTGTTGTTCGTCACCTGCTAATGCGTCACAAATACGTTGTTCAATTAATCGTCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCgg                                                                                                            <  1:590695/141‑1 (MQ=255)                                   cTTGTTGTTCGGCACCTGCTAGTGCGTCACAAATGCGTTGTTCAATTAATCGTCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGta                                                                                                          <  1:402394/141‑1 (MQ=255)                                      gttgttCGTCACCTGCTAATGCGTCACAAATACGTTGTTCAATTAATCGTCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTatat                                                                                                       <  1:731371/141‑1 (MQ=255)                                       ttgttCGTCACCTGCTAATGCGTCACAAATACGTTGTTCAATTAATCGTCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATc                                                                                                      >  2:319407/1‑141 (MQ=255)                                         gttCGTCACCTGCTAATGCGTCACAAATACGTTGTTCAATTAATCGTCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCt                                                                                                    >  1:231758/1‑141 (MQ=255)                                          ttCGTCACCTGCTAATGCGTCACAAATACGTTGTTCAATTAATCGTCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCtt                                                                                                   >  1:280262/1‑141 (MQ=255)                                              tCACCTGCTAATGCGTCACAAATACGTTGTTCAATTAATCGTCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTgaga                                                                                               <  1:418242/141‑1 (MQ=255)                                               agagacggtaatgacgacgttgattcaaagtggggttgactgttttaatattgtaccattgatattctttagtgcaatgcattatcgcaaggatATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGAt                                                                                              >  2:286344‑M1/95‑141 (MQ=255)                                                   tGCTAATGCGTCACAAATACGTTGTTCAATTAATCGTCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATg                                                                                          >  1:107319/1‑141 (MQ=255)                                                      tAATGCGTCACAAATACGTTGTTCAATTAATCGTCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCAt                                                                                       <  1:401796/141‑1 (MQ=255)                                                       aaTGCGTCACAAATACGTTGTTCAATTAATCGTCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCAtt                                                                                      >  1:266217/1‑141 (MQ=255)                                                       aaTGCGTCACAAATACGTTGTTCAATTAATCGTCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCAtt                                                                                      >  2:680787/1‑141 (MQ=255)                                                           cGTCACAAATACGTTGTTCAATTAATCGTCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCAc                                                                                  >  1:192515/1‑141 (MQ=255)                                                                caAATACGTTGTTCAATTAATCGTCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAg                                                                             >  2:169502/1‑141 (MQ=255)                                                                 aaaTACGTTGTTCAATTAATCGTCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTGCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGa                                                                            <  2:707167/141‑1 (MQ=255)                                                                   aTACGTTGTTCAATTAATCGTCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGAtt                                                                          <  2:173133/141‑1 (MQ=255)                                                                   aTACGTTGTTCAATTAATCGTCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGAtt                                                                          <  2:472336/141‑1 (MQ=255)                                                                              aaTTAATCGTCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTAc                                                               <  1:283575/141‑1 (MQ=255)                                                                                 tAATCGTCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTGTGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATTCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAAt                                                            <  2:560490/141‑1 (MQ=255)                                                                                   aTCGTCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAAttt                                                          <  2:186473/141‑1 (MQ=255)                                                                                   aTCGTCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAAttt                                                          <  2:633729/141‑1 (MQ=255)                                                                                   aTCGTCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAAttt                                                          <  1:731199/141‑1 (MQ=255)                                                                                    tCGTCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTACCAATGGTACAAtttt                                                         >  2:701587/1‑141 (MQ=255)                                                                                         tcATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAAt                                                    >  2:530236/1‑141 (MQ=255)                                                                                          tttaaaattgtaccattgctaatctttagtgcaatgcattatctcaaggatATACCGTCGTTTCATTTCATGAACGATATTc                                                                                                              >  2:159193‑M1/52‑82 (MQ=255)                                                                                          tttaaaattgtaccattgctaatctttagtgcaatgcattatctcaaggatATACCGTCGTTTCATTTCATGAACGATATTc                                                                                                              <  1:159193‑M1/31‑1 (MQ=255)                                                                                                aGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATg                                                   >  1:746552/1‑135 (MQ=255)                                                                                                aGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATg                                                   <  2:746552/135‑1 (MQ=255)                                                                                                aGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAAc                                             >  1:286043/1‑141 (MQ=255)                                                                                                 ggATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAAcc                                            <  1:291489/141‑1 (MQ=255)                                                                                                   aTGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAAcccc                                          <  1:774219/141‑1 (MQ=255)                                                                                                   aTGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAAcccc                                          <  1:553730/141‑1 (MQ=255)                                                                                                    tgtgtgCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCa                                         >  1:107648/1‑141 (MQ=255)                                                                                                     gtgtgCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCCCTGAAGGTTAGCCATAGTCCTATTTTAAAATGGTCAACCCCAc                                        >  1:350282/1‑141 (MQ=255)                                                                                                     gtgtgCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATACTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCAAc                                        >  1:560810/1‑141 (MQ=255)                                                                                                     gtgtgCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTGTCATTTCATGAACGATATTCGGTATATCCTTGCGATAATCCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCAc                                        >  2:194562/1‑141 (MQ=255)                                                                                                      tgtgCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACt                                       >  1:637755/1‑141 (MQ=255)                                                                                                       gtgCCAAGTGGCTCACTTTCTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACtt                                      <  1:392731/141‑1 (MQ=255)                                                                                                         gCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTg                                    >  2:681088/1‑141 (MQ=255)                                                                                                                 gCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAAcg                            <  1:715872/141‑1 (MQ=255)                                                                                                                   tCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTCTATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGCCAACCCCCCTTTGAATCAAcgtc                          >  1:492521/1‑141 (MQ=255)                                                                                                                   tCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAAcgtc                          >  1:527789/1‑141 (MQ=255)                                                                                                                        tACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAACGTCGTCAt                     >  1:594393/1‑141 (MQ=255)                                                                                                                        tACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAACGTCGTCAt                     >  1:641635/1‑141 (MQ=255)                                                                                                                        tACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAACGTCGTCAt                     >  1:274430/1‑141 (MQ=255)                                                                                                                          cTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAACGTCGTCATTa                   >  2:694573/1‑141 (MQ=255)                                                                                                                           ttCTACCTTTATGTCTGGATACCGTCGGTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAACGTCGTCATTAc                  >  2:74249/1‑141 (MQ=255)                                                                                                                            tCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAACGTCGTCATTAcc                 >  1:69303/1‑141 (MQ=255)                                                                                                                               aCCTTTATGTCTGGACACCGTCGTTTCATTTCATGAACGATAGTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAAGTTTAAAATGGTCAACCCCACTTTGAATCAACGTCGTCATTACCGtc              <  1:290718/141‑1 (MQ=255)                                                                                                                                  tttATGTCTTGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAATATGGTCAACCCCACTTTGAATCAACGTCGTCATTACCGTctct           <  2:752066/141‑1 (MQ=255)                                                                                                                                      tGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAACGTCGTCATTACCGTCTCTAAAt       <  2:797/141‑1 (MQ=255)                                                                                                                                           ggATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAACGTCGTCATTACCGTCTCTAAATCCTGa  >  1:404993/1‑141 (MQ=255)                                                                                                                                             |                                                                                                                                           TTAATATTGCCGTGTGCAACAACCATAACTCCAACTTGTTGTTCGTCACCTGCTAATGCGTCACAAATACGTTGTTCAATTAATCGTCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAACGTCGTCATTACCGTCTCTAAATCCTGA  >  CP000730/2525019‑2525297

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.