New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1131036 =	29 (1.050)	3 (0.130)	3/224	NT	12.2%	coding (435/435 nt)	ylbF	hypothetical protein
	?	CP000730	1131101 =	18 (0.750)					intergenic (+65/‑1163)	ylbF/USA300HOU_1059	hypothetical protein/hypothetical protein

ATGATTTATACCAAAAAGGTGCACACACGATTGTGACAGATCGACCAGATTTAGCACAACAATTCAAACAAACAATCCCGAATAAATAAAAACATCGAGTCAGATGCTAGTTAGTGGTTTCAATAACCACCTTTTTCTGACTCGATGTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1131187‑1131036 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctgactcgatgtttttATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCAGATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATC  >  CP000730/1131101‑1131239                                                                                                                                                                                                                                                                                                     ataATTTATACCAAAAAGGTGCACACACGATTGTGAAAGATCGACCAGATTTCGCACAACAATCCAAACAAACAATCCCGAATAAATAAAAACATCGAGTCAGATGCTAGTTAGTGGTTGCAACAACCACCTTTTTCTGAC                                                                                                                                                        <  2:230799/138‑1  TGATTTATACCAAAAAGGTGCACACACGATTGTGACAGATCGACCAGATTTAGCACAACAATTCAAACAAACAATCCCGAATAAATAAAAACATCGAGTCAGATGCTAGTTAGTGGTTTCAATAACCACCTTTTTCTGACT                                                                                                                                                       <  2:6013/141‑1      TTATACCAAAAAGGTGCACACACGATTGTGACAGATCGACCAGATTTAGCACAACAATTCAAACAAACAATCCCGAATAAATAAAAACATCGAGTCAGATCCTAGTTAGTGGTTTCAATAACCACCTTTTTCTGACTCGAT                                                                                                                                                   >  2:323740/1‑141            CAAAAAGGTGCACACACGATTGTGACAGATCGACCAGATTTAGCACAACAATTCAAACAAACAATCCCGAATAAATAAAAACATCGAGTCAGATGCTAGTTAGTGGTTTCAATAACCACCTTTTTCTGACTCGATGTTTTT                                                                                                                                             <  1:138407/141‑1                     GCACACACGATTGTGACAGATCGACCAGATTTAGCACAACAATTCAAACAAACAATCCCGAATAAATAAAAACATCGAGTCAGATGCTAGTTAGTGGTTTCAATAACCACCTTTTTCTGACTCGATGTTTTT                                                                                                                                             <  2:253092/132‑1                     GCACACACGATTGTGACAGATCGACCAGATTTAGCACAACAATTCAAACAAACAATCCCGAATAAATAAAAACATCGAGTCAGATGCTAGTTAGTGGTTTCAATAACCACCTTTTTCTGACTCGATGTTTTT                                                                                                                                             >  1:253092/1‑132                                                                                              ATCGAGTCAGATGCTAGTTAGTGGTTTCAATAACCACCTTTTTCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGACTTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAA                                                           >  1:117998/1‑141                                                                                                        ATGCTAGTTAGTGGTTTCAATAACCACCTTTTTCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATC                                                 >  2:256869/1‑141                                                                                                            TAGTTAGTGGTTTCAATAACCACCTTTTTCTGACTCGATGTTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCAGAT                                             <  1:256869/141‑1                                                                                                                                                    TTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCAGATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCAT     <  1:205544/141‑1                                                                                                                                                    TTTTTATTTATTCGGGATTGTATGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCAGATTTATACTATTTACGCCATAATAGCCTGGAATGATATgaat     <  1:152826/141‑5                                                                                                                                                      TTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCAGATTTATACTATTTACGCCATAATAGCCTGGAATGATATGAATAT   <  2:129424/141‑1                                                                                                                                                       TTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCAGATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATC  >  1:83729/1‑141                                                                                                                                                                                                                                                                                                     ATGATTTATACCAAAAAGGTGCACACACGATTGTGACAGATCGACCAGATTTAGCACAACAATTCAAACAAACAATCCCGAATAAATAAAAACATCGAGTCAGATGCTAGTTAGTGGTTTCAATAACCACCTTTTTCTGACTCGATGTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1131187‑1131036 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctgactcgatgtttttATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCAGATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATC  >  CP000730/1131101‑1131239

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.