Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP000730 | 1,929,870 | 0 | A | C | 74.5% | 954.7 / 225.3 | 461 | intergenic (‑953/‑215) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base A (71/46); new base C (188/154); total (260/201) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 3.31e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
Only 100 of 463 total aligned reads displayed.
TAAGTGTAGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑T‑GATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGA > CP000730/1929723‑1930017 | aGTGTAGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGATTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGAAGCTGAGAGGAGGTGTA‑TAA‑G‑G‑T‑GATg > 2:755081/1‑148 (MQ=255) aGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑T‑GATGCTTAt > 1:150492/1‑148 (MQ=255) ttCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTACACGAATAGAGGAGGTGTA‑TAA‑G‑G‑T‑GATGCTTATTTTCGt < 1:1046374/148‑1 (MQ=255) gAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑T‑GATGCTTATTTTCGTTCACATCATAGCACCa > 1:959765/1‑148 (MQ=255) tCATATACCTTATCACAAGCAAGTGACCGTGCTGGTATATTTGCCGATGATATAATAGTCGAGTGGCCCATCTCCCAGGCGTCAATTGAGACGCAGCGAGGCGGTGTG‑TAC‑G‑G‑T‑CATGCTTGTTTTCGTTCACTGCATCGCAccgttc > 2:530522/1‑144 (MQ=255) ttATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑T‑GATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑Gc > 2:829469/1‑148 (MQ=255) tATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑T‑GATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCt < 1:125439/148‑1 (MQ=255) tcggaagtagatgtgCTTGTATATTCACAGATGGTAGAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑CTT‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGctgt < 2:275555/137‑4 (MQ=255) gCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCGTATCTATCAGGCGGCAATTTAGACGCAGAGAGGAGGGGTA‑TAA‑G‑G‑T‑GGTGCTTATGTTCGTTCAGATAATCGCACCATGAATCAGGG‑GCTGGGccgag > 1:122474/1‑145 (MQ=255) gaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑C‑TTT‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGc > 2:251711/11‑148 (MQ=255) agtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGt < 1:881499/140‑1 (MQ=255) agtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGt < 1:13218/140‑1 (MQ=255) agtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGt > 2:669658/9‑148 (MQ=255) agtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGt < 1:179174/140‑1 (MQ=255) aggtgatatgCTTGTAGATGCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTC‑C‑C‑TCTCTAATCATTTCCGTTCACATCATCGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGt < 2:685884/140‑1 (MQ=255) gtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGta < 1:809794/141‑2 (MQ=255) gtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCCCGTCCTTTTCGTTCCCATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGta < 1:1179513/141‑2 (MQ=255) tagatatgCTTGGATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGtat < 2:351620/142‑3 (MQ=255) agatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGtatt > 1:442807/6‑148 (MQ=255) tatgattGTATATTCCCAGATGGTATAATAATAGAGCCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGtattata < 1:101923/143‑7 (MQ=255) atgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGtattatac > 1:324625/2‑144 (MQ=255) gCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑T‑GATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCt < 2:1004300/148‑1 (MQ=255) gCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑T‑GATGCCTATTTTCGTTCACATCATAGCACCAGTCATCAGTC‑GCTCTGCCCTTCCGCTTTTTTCt > 2:1216434/1‑148 (MQ=255) gCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑CTT‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGtattatactt < 1:792440/148‑10 (MQ=255) ttGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGtattatacttat < 1:1106449/148‑12 (MQ=255) tGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTAtt < 2:504133/148‑1 (MQ=255) gtatattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGGGGTGAC‑TTACT‑T‑T‑GCTAATAATTTTCGTTCACATCATACCACCAGTCATCAGTT‑GCTGTGCTGTTGCGTATTATACTTATTg > 2:441618/12‑148 (MQ=255) gtatattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTg > 2:579255/12‑148 (MQ=255) ggatatTCGCAGATGGTATGATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑TCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTg < 2:924589/146‑1 (MQ=255) gTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑T‑GATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTAtt < 1:615205/148‑1 (MQ=255) tatattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCGTTGCGTATTATACTTAATgg > 2:1086101/11‑148 (MQ=255) tatattcacagatggtATAATAATAGAGTCGCCTAGCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTgg < 2:766548/138‑1 (MQ=255) atattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGc > 1:512773/10‑148 (MQ=255) ttttcacagtggggataataataGATGCTCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCt < 2:1255786/134‑1 (MQ=255) tattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCt > 1:368273/9‑148 (MQ=255) attcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCGTTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCtt > 1:287168/8‑147 (MQ=255) attcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCtt > 2:1119391/8‑147 (MQ=255) ttccaagagggtataATAATAGAGTCGCCTATCTCGCAGGCGTAAATT‑‑GACGAAGAGAGGAGGTGCAGTAC‑T‑T‑T‑GGTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCtta < 2:333341/137‑3 (MQ=255) ttcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCtta < 2:861165/142‑3 (MQ=255) ttGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑T‑GATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTaa > 1:630461/1‑148 (MQ=255) cacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGt > 1:707125/5‑148 (MQ=255) acagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTa > 2:606819/4‑148 (MQ=255) acagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑CTT‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTa > 1:642498/4‑148 (MQ=255) ccGATGGTATAATAATAGAGTCGCCTACCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaa < 1:624482/148‑2 (MQ=255) cagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaa > 1:538148/3‑147 (MQ=255) cagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaa > 2:97425/3‑147 (MQ=255) cagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaa > 1:1191531/3‑147 (MQ=255) agatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaaa < 1:251711/147‑3 (MQ=255) agatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaaa > 1:189485/2‑146 (MQ=255) agatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaaa > 2:848992/2‑146 (MQ=255) agagggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑CTT‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaaa < 1:410476/142‑3 (MQ=255) gatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCttcgtaaac < 2:1048031/148‑9 (MQ=255) atggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACg < 2:31049/148‑1 (MQ=255) tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGc < 1:55088/145‑1 (MQ=255) tgatATAATAGTAGAGTCGCCTATCTGTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑T‑GATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTGGACg > 1:661267/1‑148 (MQ=255) ggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa < 1:1147900/146‑1 (MQ=255) atatAATAGTAGAGTCGCCTATCTCTCAGGCGACCATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑T‑GATACTGATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGGTTTTTCCTCATTGGCTACGTAGACGcc > 2:386759/1‑147 (MQ=255) tataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GATGAAGAGAGGAGGTGCA‑TTA‑CTT‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaac < 2:168459/148‑2 (MQ=255) ataataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaaca > 1:769166/1‑146 (MQ=255) taataaTAGAGTCGGCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaa < 2:954276/148‑4 (MQ=255) taataaTAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaa < 2:463459/148‑4 (MQ=255) taataaTAGAGTCGCCTATCGCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑C‑TTT‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaa < 2:1102198/148‑4 (MQ=255) taataaTAGAGGCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTAACATCATAGCACCACTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaa < 2:380243/148‑4 (MQ=255) aataatAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaa > 2:717657/1‑144 (MQ=255) ataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaat < 1:113259/148‑6 (MQ=255) ataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGGGCA‑TTA‑C‑TTT‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTAATGGCTTAGTAAACGCaacaaat < 1:922244/148‑6 (MQ=255) tagtagAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑T‑GATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACaa > 2:734681/1‑148 (MQ=255) aatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTTCGTATTATACTTATTGGCTTAGTAAACGCaacaaatat > 2:610836/3‑141 (MQ=255) aatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataa < 2:786521/146‑8 (MQ=255) aatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGAGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTACGTATTATACTTATTGGCTTAGTAAACGCaacaaataa > 1:428915/3‑141 (MQ=255) atagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataat > 2:900319/2‑140 (MQ=255) atagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataat > 2:878768/2‑140 (MQ=255) atagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCAACACATAAt > 2:982378/2‑148 (MQ=255) atagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑C‑TTT‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GTTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataat < 1:351625/147‑9 (MQ=255) tagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatt > 1:1003038/1‑139 (MQ=255) agagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTTCA‑TGACT‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTGTTATACTTATTGGCTTAGTAAACGCaacaaataatta > 2:206715/1‑138 (MQ=255) agagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatta > 1:1027314/1‑138 (MQ=255) agTCGCCTATCTCTCAGGCGTCACTT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑C‑TTT‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat > 1:742502/1‑136 (MQ=255) agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑TCTAATCATTTTCGTTGTCATCATAGCACCAGTCATCAGTG‑GCTGTGATGTTGCGTATTGGACGTATTGTCTTAGTAAACGCaacaaatagttaat > 2:447031/1‑136 (MQ=255) agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat > 2:1184594/1‑136 (MQ=255) agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat > 2:395947/1‑136 (MQ=255) agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat > 2:23184/1‑136 (MQ=255) agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat > 2:1031279/1‑136 (MQ=255) gTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑T‑GATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGt < 1:861395/148‑1 (MQ=255) gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGTTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata > 1:304603/1‑135 (MQ=255) gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTGATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata > 1:842348/1‑135 (MQ=255) gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTGAACGCaacaaataattacta > 1:392665/1‑135 (MQ=255) gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAACCGCaacaaataattaata > 2:174245/1‑135 (MQ=255) gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata > 2:1204172/1‑135 (MQ=255) gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata > 1:221401/1‑135 (MQ=255) gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata > 2:1139065/1‑135 (MQ=255) gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata > 2:163068/1‑135 (MQ=255) gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata > 1:398030/1‑135 (MQ=255) gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACAAG‑CATTAGGGTGCTGGTCTGTTGCGTATTATACTTATTGGCTTAGTAGACGCaacaaataattacta > 1:591793/1‑135 (MQ=255) tCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATCCTTATTGGCTTAGTAAACGCaacaaataattaatag > 1:690337/1‑134 (MQ=255) gACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑T‑GATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATcc > 2:1014763/1‑148 (MQ=255) aCGCAGAGGGGAGTTTTA‑TAA‑G‑G‑T‑GATGCTTAGTTCCGTTCACATCAGAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATccc < 1:474670/148‑1 (MQ=255) gCAGAGAGGAGGTGTA‑TAA‑G‑G‑T‑GATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCt > 2:537092/1‑148 (MQ=255) a‑G‑G‑T‑GATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGa < 1:715243/148‑1 (MQ=255) gATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCCTCACGATTGTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAgggg > 1:975359/1‑148 (MQ=255) | TAAGTGTAGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑T‑GATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGA > CP000730/1929723‑1930017 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |