Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007301,929,8700AC74.5% 954.7 / 225.3 461intergenic (‑953/‑215)USA300HOU_1794/USA300HOU_1796hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (71/46);  new base C (188/154);  total (260/201)
Fisher's exact test for biased strand distribution p-value = 3.31e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 463 total aligned reads displayed.

TAAGTGTAGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑T‑GATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGA  >  CP000730/1929723‑1930017
                                                                                                                                                        |                                                                                                                                                    
  aGTGTAGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGATTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGAAGCTGAGAGGAGGTGTA‑TAA‑G‑G‑T‑GATg                                                                                                                                                    >  2:755081/1‑148 (MQ=255)
       aGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑T‑GATGCTTAt                                                                                                                                               >  1:150492/1‑148 (MQ=255)
             ttCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTACACGAATAGAGGAGGTGTA‑TAA‑G‑G‑T‑GATGCTTATTTTCGt                                                                                                                                         <  1:1046374/148‑1 (MQ=255)
                             gAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑T‑GATGCTTATTTTCGTTCACATCATAGCACCa                                                                                                                         >  1:959765/1‑148 (MQ=255)
                                tCATATACCTTATCACAAGCAAGTGACCGTGCTGGTATATTTGCCGATGATATAATAGTCGAGTGGCCCATCTCCCAGGCGTCAATTGAGACGCAGCGAGGCGGTGTG‑TAC‑G‑G‑T‑CATGCTTGTTTTCGTTCACTGCATCGCAccgttc                                                                                                                      >  2:530522/1‑144 (MQ=255)
                                         ttATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑T‑GATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑Gc                                                                                                            >  2:829469/1‑148 (MQ=255)
                                          tATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑T‑GATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCt                                                                                                           <  1:125439/148‑1 (MQ=255)
                                                tcggaagtagatgtgCTTGTATATTCACAGATGGTAGAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑CTT‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGctgt                                                                                                    <  2:275555/137‑4 (MQ=255)
                                                  gCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCGTATCTATCAGGCGGCAATTTAGACGCAGAGAGGAGGGGTA‑TAA‑G‑G‑T‑GGTGCTTATGTTCGTTCAGATAATCGCACCATGAATCAGGG‑GCTGGGccgag                                                                                                   >  1:122474/1‑145 (MQ=255)
                                                   gaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑C‑TTT‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGc                                                                                                 >  2:251711/11‑148 (MQ=255)
                                                     agtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGt                                                                                               <  1:881499/140‑1 (MQ=255)
                                                     agtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGt                                                                                               <  1:13218/140‑1 (MQ=255)
                                                     agtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGt                                                                                               >  2:669658/9‑148 (MQ=255)
                                                     agtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGt                                                                                               <  1:179174/140‑1 (MQ=255)
                                                     aggtgatatgCTTGTAGATGCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTC‑C‑C‑TCTCTAATCATTTCCGTTCACATCATCGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGt                                                                                               <  2:685884/140‑1 (MQ=255)
                                                      gtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGta                                                                                              <  1:809794/141‑2 (MQ=255)
                                                      gtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCCCGTCCTTTTCGTTCCCATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGta                                                                                              <  1:1179513/141‑2 (MQ=255)
                                                       tagatatgCTTGGATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGtat                                                                                             <  2:351620/142‑3 (MQ=255)
                                                        agatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGtatt                                                                                            >  1:442807/6‑148 (MQ=255)
                                                           tatgattGTATATTCCCAGATGGTATAATAATAGAGCCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGtattata                                                                                         <  1:101923/143‑7 (MQ=255)
                                                            atgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGtattatac                                                                                        >  1:324625/2‑144 (MQ=255)
                                                              gCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑T‑GATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCt                                                                                       <  2:1004300/148‑1 (MQ=255)
                                                              gCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑T‑GATGCCTATTTTCGTTCACATCATAGCACCAGTCATCAGTC‑GCTCTGCCCTTCCGCTTTTTTCt                                                                                       >  2:1216434/1‑148 (MQ=255)
                                                              gCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑CTT‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGtattatactt                                                                                      <  1:792440/148‑10 (MQ=255)
                                                                ttGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGtattatacttat                                                                                    <  1:1106449/148‑12 (MQ=255)
                                                                 tGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTAtt                                                                                   <  2:504133/148‑1 (MQ=255)
                                                                  gtatattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGGGGTGAC‑TTACT‑T‑T‑GCTAATAATTTTCGTTCACATCATACCACCAGTCATCAGTT‑GCTGTGCTGTTGCGTATTATACTTATTg                                                                                  >  2:441618/12‑148 (MQ=255)
                                                                  gtatattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTg                                                                                  >  2:579255/12‑148 (MQ=255)
                                                                  ggatatTCGCAGATGGTATGATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑TCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTg                                                                                  <  2:924589/146‑1 (MQ=255)
                                                                  gTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑T‑GATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTAtt                                                                                   <  1:615205/148‑1 (MQ=255)
                                                                   tatattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCGTTGCGTATTATACTTAATgg                                                                                 >  2:1086101/11‑148 (MQ=255)
                                                                   tatattcacagatggtATAATAATAGAGTCGCCTAGCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTgg                                                                                 <  2:766548/138‑1 (MQ=255)
                                                                    atattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGc                                                                                >  1:512773/10‑148 (MQ=255)
                                                                     ttttcacagtggggataataataGATGCTCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCt                                                                               <  2:1255786/134‑1 (MQ=255)
                                                                     tattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCt                                                                               >  1:368273/9‑148 (MQ=255)
                                                                      attcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCGTTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCtt                                                                              >  1:287168/8‑147 (MQ=255)
                                                                      attcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCtt                                                                              >  2:1119391/8‑147 (MQ=255)
                                                                       ttccaagagggtataATAATAGAGTCGCCTATCTCGCAGGCGTAAATT‑‑GACGAAGAGAGGAGGTGCAGTAC‑T‑T‑T‑GGTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCtta                                                                             <  2:333341/137‑3 (MQ=255)
                                                                       ttcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCtta                                                                             <  2:861165/142‑3 (MQ=255)
                                                                        ttGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑T‑GATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTaa                                                                             >  1:630461/1‑148 (MQ=255)
                                                                         cacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGt                                                                           >  1:707125/5‑148 (MQ=255)
                                                                          acagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTa                                                                          >  2:606819/4‑148 (MQ=255)
                                                                          acagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑CTT‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTa                                                                          >  1:642498/4‑148 (MQ=255)
                                                                           ccGATGGTATAATAATAGAGTCGCCTACCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaa                                                                         <  1:624482/148‑2 (MQ=255)
                                                                           cagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaa                                                                         >  1:538148/3‑147 (MQ=255)
                                                                           cagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaa                                                                         >  2:97425/3‑147 (MQ=255)
                                                                           cagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaa                                                                         >  1:1191531/3‑147 (MQ=255)
                                                                            agatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaaa                                                                        <  1:251711/147‑3 (MQ=255)
                                                                            agatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaaa                                                                        >  1:189485/2‑146 (MQ=255)
                                                                            agatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaaa                                                                        >  2:848992/2‑146 (MQ=255)
                                                                            agagggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑CTT‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaaa                                                                        <  1:410476/142‑3 (MQ=255)
                                                                             gatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCttcgtaaac                                                                       <  2:1048031/148‑9 (MQ=255)
                                                                              atggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACg                                                                      <  2:31049/148‑1 (MQ=255)
                                                                               tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGc                                                                     <  1:55088/145‑1 (MQ=255)
                                                                               tgatATAATAGTAGAGTCGCCTATCTGTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑T‑GATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTGGACg                                                                      >  1:661267/1‑148 (MQ=255)
                                                                                ggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa                                                                    <  1:1147900/146‑1 (MQ=255)
                                                                                 atatAATAGTAGAGTCGCCTATCTCTCAGGCGACCATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑T‑GATACTGATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGGTTTTTCCTCATTGGCTACGTAGACGcc                                                                    >  2:386759/1‑147 (MQ=255)
                                                                                  tataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GATGAAGAGAGGAGGTGCA‑TTA‑CTT‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaac                                                                  <  2:168459/148‑2 (MQ=255)
                                                                                   ataataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaaca                                                                 >  1:769166/1‑146 (MQ=255)
                                                                                    taataaTAGAGTCGGCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaa                                                                <  2:954276/148‑4 (MQ=255)
                                                                                    taataaTAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaa                                                                <  2:463459/148‑4 (MQ=255)
                                                                                    taataaTAGAGTCGCCTATCGCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑C‑TTT‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaa                                                                <  2:1102198/148‑4 (MQ=255)
                                                                                    taataaTAGAGGCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTAACATCATAGCACCACTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaa                                                                <  2:380243/148‑4 (MQ=255)
                                                                                     aataatAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaa                                                               >  2:717657/1‑144 (MQ=255)
                                                                                      ataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaat                                                              <  1:113259/148‑6 (MQ=255)
                                                                                      ataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGGGCA‑TTA‑C‑TTT‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTAATGGCTTAGTAAACGCaacaaat                                                              <  1:922244/148‑6 (MQ=255)
                                                                                       tagtagAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑T‑GATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACaa                                                              >  2:734681/1‑148 (MQ=255)
                                                                                        aatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTTCGTATTATACTTATTGGCTTAGTAAACGCaacaaatat                                                            >  2:610836/3‑141 (MQ=255)
                                                                                        aatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataa                                                            <  2:786521/146‑8 (MQ=255)
                                                                                        aatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGAGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTACGTATTATACTTATTGGCTTAGTAAACGCaacaaataa                                                            >  1:428915/3‑141 (MQ=255)
                                                                                         atagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataat                                                           >  2:900319/2‑140 (MQ=255)
                                                                                         atagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataat                                                           >  2:878768/2‑140 (MQ=255)
                                                                                         atagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCAACACATAAt                                                           >  2:982378/2‑148 (MQ=255)
                                                                                         atagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑C‑TTT‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GTTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataat                                                           <  1:351625/147‑9 (MQ=255)
                                                                                          tagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatt                                                          >  1:1003038/1‑139 (MQ=255)
                                                                                           agagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTTCA‑TGACT‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTGTTATACTTATTGGCTTAGTAAACGCaacaaataatta                                                         >  2:206715/1‑138 (MQ=255)
                                                                                           agagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatta                                                         >  1:1027314/1‑138 (MQ=255)
                                                                                             agTCGCCTATCTCTCAGGCGTCACTT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑C‑TTT‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat                                                       >  1:742502/1‑136 (MQ=255)
                                                                                             agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑TCTAATCATTTTCGTTGTCATCATAGCACCAGTCATCAGTG‑GCTGTGATGTTGCGTATTGGACGTATTGTCTTAGTAAACGCaacaaatagttaat                                                       >  2:447031/1‑136 (MQ=255)
                                                                                             agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat                                                       >  2:1184594/1‑136 (MQ=255)
                                                                                             agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat                                                       >  2:395947/1‑136 (MQ=255)
                                                                                             agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat                                                       >  2:23184/1‑136 (MQ=255)
                                                                                             agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat                                                       >  2:1031279/1‑136 (MQ=255)
                                                                                              gTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑T‑GATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGt                                                       <  1:861395/148‑1 (MQ=255)
                                                                                              gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGTTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                                      >  1:304603/1‑135 (MQ=255)
                                                                                              gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTGATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                                      >  1:842348/1‑135 (MQ=255)
                                                                                              gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTGAACGCaacaaataattacta                                                      >  1:392665/1‑135 (MQ=255)
                                                                                              gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAACCGCaacaaataattaata                                                      >  2:174245/1‑135 (MQ=255)
                                                                                              gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                                      >  2:1204172/1‑135 (MQ=255)
                                                                                              gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                                      >  1:221401/1‑135 (MQ=255)
                                                                                              gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                                      >  2:1139065/1‑135 (MQ=255)
                                                                                              gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                                      >  2:163068/1‑135 (MQ=255)
                                                                                              gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                                      >  1:398030/1‑135 (MQ=255)
                                                                                              gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACAAG‑CATTAGGGTGCTGGTCTGTTGCGTATTATACTTATTGGCTTAGTAGACGCaacaaataattacta                                                      >  1:591793/1‑135 (MQ=255)
                                                                                               tCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑T‑GCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATCCTTATTGGCTTAGTAAACGCaacaaataattaatag                                                     >  1:690337/1‑134 (MQ=255)
                                                                                                                         gACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑T‑GATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATcc                            >  2:1014763/1‑148 (MQ=255)
                                                                                                                          aCGCAGAGGGGAGTTTTA‑TAA‑G‑G‑T‑GATGCTTAGTTCCGTTCACATCAGAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATccc                           <  1:474670/148‑1 (MQ=255)
                                                                                                                            gCAGAGAGGAGGTGTA‑TAA‑G‑G‑T‑GATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCt                         >  2:537092/1‑148 (MQ=255)
                                                                                                                                               a‑G‑G‑T‑GATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGa       <  1:715243/148‑1 (MQ=255)
                                                                                                                                                       gATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCCTCACGATTGTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAgggg   >  1:975359/1‑148 (MQ=255)
                                                                                                                                                        |                                                                                                                                                    
TAAGTGTAGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑T‑GATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGA  >  CP000730/1929723‑1930017

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑