Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP000730 | 1,929,928 | 0 | T | A | 70.4% | 584.3 / inf | 394 | intergenic (‑1011/‑157) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base T (56/60); new base A (167/109); total (225/169) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 3.35e-02 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.95e-01 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
Only 100 of 402 total aligned reads displayed.
CTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GG‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCT > CP000730/1929781‑1930073 | gtgCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GG‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGttttttt < 1:858066/148‑1 (MQ=255) tgCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GG‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTc > 1:354632/1‑148 (MQ=255) gCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GG‑TGATGCCTATTTTCGTTCACATCATAGCACCAGTCATCAGTC‑GCTCTGCCCTTCCGCTTTTTTCt > 2:1216434/1‑148 (MQ=255) gCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACtt > 2:1111792/1‑148 (MQ=255) cTTGTATCTTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCATCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GG‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCtt < 1:701625/148‑1 (MQ=255) ttataCTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GG‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGAG‑GCTATGCCATTGCGTTTTTTTCTTAtt < 1:641384/147‑1 (MQ=255) gtatattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTTTTATACTTATTg > 2:244777/12‑148 (MQ=255) gtatattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTg > 2:38585/12‑148 (MQ=255) gtatattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTg > 2:390551/12‑148 (MQ=255) gtatattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTg > 2:579255/12‑148 (MQ=255) gtatattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGACAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTg > 2:811319/12‑148 (MQ=255) gTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GG‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTAtt < 1:615205/148‑1 (MQ=255) gTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATGATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACGTATTg > 1:1024112/1‑148 (MQ=255) tatattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTgg < 1:1039550/138‑1 (MQ=255) atattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGGGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTTTTGGc > 1:791497/10‑148 (MQ=255) atattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGc > 1:512773/10‑148 (MQ=255) tattcacagatggtATAAGAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGATAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCt < 2:379147/140‑1 (MQ=255) attcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCGTTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCtt > 1:287168/8‑147 (MQ=255) ttGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GG‑TGATGCTTATTTTCGTTCACATCAGAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTaa > 2:851925/1‑148 (MQ=255) tcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAg > 1:1180724/6‑148 (MQ=255) cacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCCCCAGTCATCAGTG‑GCTGTGCTGTTGAGTATTATACTTATTGGCTTAGt > 1:539229/5‑148 (MQ=255) cacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGt > 2:979289/5‑148 (MQ=255) cacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGt > 1:707125/5‑148 (MQ=255) cacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGt > 1:249551/5‑148 (MQ=255) acagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTa > 2:274558/4‑148 (MQ=255) cagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaa > 2:947599/3‑147 (MQ=255) cagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaa > 2:1038871/3‑147 (MQ=255) cagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaa < 1:337105/146‑2 (MQ=255) cGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GG‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAg > 2:917343/1‑148 (MQ=255) agatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaaa > 2:412723/2‑146 (MQ=255) agatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaaa < 2:771795/147‑3 (MQ=255) agatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaaa > 2:1148935/2‑146 (MQ=255) agatggtATAATAATAGAGTCGCCTATCCCTCAGGCGGCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaaa < 1:410398/147‑3 (MQ=255) gatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAAc > 1:397814/1‑148 (MQ=255) atgatATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GG‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGAc < 1:935199/148‑1 (MQ=255) tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGc > 2:841748/4‑148 (MQ=255) tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAA‑TA‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGc < 1:1231139/145‑1 (MQ=255) tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaaccgc < 1:168259/145‑6 (MQ=255) tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGc > 1:666382/4‑148 (MQ=255) tggtagaataatAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGc < 1:866864/142‑1 (MQ=255) gggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGc < 1:430563/145‑1 (MQ=255) ggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa < 1:1147900/146‑1 (MQ=255) ggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa < 2:505444/146‑1 (MQ=255) tataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑ac > 1:391461/1‑147 (MQ=255) ttaagaatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑aca < 2:1006104/141‑3 (MQ=255) ataataataGTGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑CTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑aca < 2:1091120/148‑3 (MQ=255) ataataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑aca > 1:442724/1‑146 (MQ=255) taataaTAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATCCTTATGGGCTTAGTAAACGCa‑‑acaa > 1:959047/1‑145 (MQ=255) taataaTAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaa > 1:630392/1‑145 (MQ=255) taataGTAGCGGCGCCTAGCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaa < 2:217369/148‑4 (MQ=255) aataatAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaa > 2:534413/1‑144 (MQ=255) ataatagAGCCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaat < 1:56384/144‑6 (MQ=255) ataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaat < 1:113259/148‑6 (MQ=255) tagtagAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GG‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑aa > 2:734681/1‑148 (MQ=255) taatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCCTTTTAGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaata > 2:168839/4‑142 (MQ=255) taatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaata > 2:861253/4‑142 (MQ=255) taatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GACGTCCTTTTGCGTATTATACTTATTGGCTTCGTAACCGCa‑‑acaaata > 2:464341/4‑142 (MQ=255) cagtagAGTCGCCAATCGCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GG‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑aa < 1:742239/147‑1 (MQ=255) aatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTTCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaatat > 2:610836/3‑141 (MQ=255) aatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataa < 2:786521/146‑8 (MQ=255) aatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGGTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataa > 2:179239/3‑141 (MQ=255) aaggcggTCGCATATCTCTCATGCGGCAA‑‑TCGACGAAGAGAGGAGGTGCA‑TTA‑CTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataa < 2:1176296/142‑8 (MQ=255) atagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataat > 1:1109601/2‑140 (MQ=255) atagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataat > 2:878768/2‑140 (MQ=255) atagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataat > 2:900319/2‑140 (MQ=255) tagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataatt > 1:1003038/1‑139 (MQ=255) tagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataatt < 1:994809/148‑10 (MQ=255) tagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataatt < 1:884538/148‑10 (MQ=255) agagTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GG‑TGATGCTTAGTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTCGGCGCA‑‑CAAC‑‑aa‑‑aagt > 1:199955/1‑146 (MQ=255) agagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaatgattt > 2:308008/1‑138 (MQ=255) agagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTACGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATGGGCTTAGTAAACGCa‑‑acaaataatta > 1:762646/1‑138 (MQ=255) gagTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GG‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAg > 1:1213024/1‑148 (MQ=255) agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TTCTAATCATTTTCGTTGTCATCATAGCACCAGTCATCAGTG‑GCTGTGATGTTGCGTATTGGACGTATTGTCTTAGTAAACGCa‑‑acaaatagttaat > 2:447031/1‑136 (MQ=255) agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataattaat > 2:1031279/1‑136 (MQ=255) agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataattaat > 1:1075974/1‑136 (MQ=255) gTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GG‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGt < 1:1191020/148‑1 (MQ=255) gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGTTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataattaata > 1:304603/1‑135 (MQ=255) gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataattaata > 2:1204172/1‑135 (MQ=255) gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACTT‑TGCTAATCATTTTCGTTCACATCATAGCACAAG‑CATTAGGGTGCTGGTCTGTTGCGTATTATACTTATTGGCTTAGTAGACGCa‑‑acaaataattacta > 1:591793/1‑135 (MQ=255) tCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataattaatag > 2:1132972/1‑134 (MQ=255) ctcAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GG‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑A‑TAT‑AGcc > 1:132005/1‑148 (MQ=255) tcAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GG‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑g < 2:959765/148‑1 (MQ=255) cAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GG‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑Gc > 2:1068707/1‑148 (MQ=255) gaggTGTA‑GAA‑GG‑TGCTGCTTCTGTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCg < 2:326218/148‑1 (MQ=255) aa‑GG‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTg < 2:16437/148‑1 (MQ=255) a‑GG‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGa < 1:715243/148‑1 (MQ=255) g‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GATGTGCCATTGCGTTTTTTTCTTTTTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAG‑A‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACGACCGCACATAGTGAgg > 2:75817/1‑148 (MQ=255) tGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGAt < 2:354632/148‑1 (MQ=255) ttccaatcatAGCACCAGTCATCAGTG‑GCTGGGCTTTTGCGTATTATACTTATTGGCTTAGTAAACGCAACAAAT‑‑AATTAATAGGCGACTT‑TATAAGCCAGCATCGA‑AAAAATCCCCACACTACTGC‑AATAGTGTGGGGATTGgtgca < 1:532836/143‑3 (MQ=255) tCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCAACAAAT‑‑AATTAATAGGCGACTT‑TATAAGCCAGCATCGA‑AAAAATCCCCACACTACTGC‑AATAGTGTGGGGATTGgtgcat > 2:337843/1‑145 (MQ=255) tCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCAACAAAT‑‑AATTAATAGGCGAC‑TTTATAAGCCAGCATCGA‑AAAAATCCCCACACTACTGC‑AATAGTGTGGGGATTGGTGcat > 2:607197/1‑148 (MQ=255) acaTCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAAAAGTGAGGGGATTGGTGTATAAGTaaa > 1:237413/1‑148 (MQ=255) tcatAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATAc < 2:150492/148‑1 (MQ=255) tcatAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATAc < 2:719673/148‑1 (MQ=255) atAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCA‑‑ACAAATAATTAATAGGCGACTT‑TATAAGCCAGCATCGA‑AAAAATCCCCCCACTACTGC‑AATAGTGTGGGGATTGGTGgattaattgt > 1:501538/1‑141 (MQ=255) cACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTATATAAGTAAATACTTAttt > 2:1254330/1‑148 (MQ=255) cACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑GCACCAATAAAAATCACCTCACTACCGCCAATGGTGAGGGGGTGGGTGTATAAGTAAATACTTAttt > 1:18527/1‑148 (MQ=255) gTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCATaa > 2:653618/1‑148 (MQ=255) gCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATta < 2:705159/148‑1 (MQ=255) tttttCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑G‑TAT‑GACC‑GCTGCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGGCTTAATTATACTGGTAATTTTTCt > 1:659699/1‑148 (MQ=255) | CTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GG‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCT > CP000730/1929781‑1930073 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |