Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007301,929,9280TA70.4% 584.3 / inf 394intergenic (‑1011/‑157)USA300HOU_1794/USA300HOU_1796hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (56/60);  new base A (167/109);  total (225/169)
Fisher's exact test for biased strand distribution p-value = 3.35e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.95e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 402 total aligned reads displayed.

CTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GG‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCT  >  CP000730/1929781‑1930073
                                                                                                                                                       |                                                                                                                                                           
  gtgCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GG‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGttttttt                                                                                                                                                           <  1:858066/148‑1 (MQ=255)
   tgCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GG‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTc                                                                                                                                                          >  1:354632/1‑148 (MQ=255)
    gCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GG‑TGATGCCTATTTTCGTTCACATCATAGCACCAGTCATCAGTC‑GCTCTGCCCTTCCGCTTTTTTCt                                                                                                                                                         >  2:1216434/1‑148 (MQ=255)
    gCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACtt                                                                                                                                                        >  2:1111792/1‑148 (MQ=255)
     cTTGTATCTTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCATCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GG‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCtt                                                                                                                                                        <  1:701625/148‑1 (MQ=255)
        ttataCTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GG‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGAG‑GCTATGCCATTGCGTTTTTTTCTTAtt                                                                                                                                                     <  1:641384/147‑1 (MQ=255)
        gtatattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTTTTATACTTATTg                                                                                                                                                    >  2:244777/12‑148 (MQ=255)
        gtatattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTg                                                                                                                                                    >  2:38585/12‑148 (MQ=255)
        gtatattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTg                                                                                                                                                    >  2:390551/12‑148 (MQ=255)
        gtatattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTg                                                                                                                                                    >  2:579255/12‑148 (MQ=255)
        gtatattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGACAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTg                                                                                                                                                    >  2:811319/12‑148 (MQ=255)
        gTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GG‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTAtt                                                                                                                                                     <  1:615205/148‑1 (MQ=255)
        gTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATGATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACGTATTg                                                                                                                                                    >  1:1024112/1‑148 (MQ=255)
         tatattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTgg                                                                                                                                                   <  1:1039550/138‑1 (MQ=255)
          atattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGGGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTTTTGGc                                                                                                                                                  >  1:791497/10‑148 (MQ=255)
          atattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGc                                                                                                                                                  >  1:512773/10‑148 (MQ=255)
           tattcacagatggtATAAGAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGATAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCt                                                                                                                                                 <  2:379147/140‑1 (MQ=255)
            attcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCGTTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCtt                                                                                                                                                >  1:287168/8‑147 (MQ=255)
              ttGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GG‑TGATGCTTATTTTCGTTCACATCAGAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTaa                                                                                                                                               >  2:851925/1‑148 (MQ=255)
              tcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAg                                                                                                                                              >  1:1180724/6‑148 (MQ=255)
               cacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCCCCAGTCATCAGTG‑GCTGTGCTGTTGAGTATTATACTTATTGGCTTAGt                                                                                                                                             >  1:539229/5‑148 (MQ=255)
               cacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGt                                                                                                                                             >  2:979289/5‑148 (MQ=255)
               cacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGt                                                                                                                                             >  1:707125/5‑148 (MQ=255)
               cacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGt                                                                                                                                             >  1:249551/5‑148 (MQ=255)
                acagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTa                                                                                                                                            >  2:274558/4‑148 (MQ=255)
                 cagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaa                                                                                                                                           >  2:947599/3‑147 (MQ=255)
                 cagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaa                                                                                                                                           >  2:1038871/3‑147 (MQ=255)
                 cagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaa                                                                                                                                           <  1:337105/146‑2 (MQ=255)
                  cGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GG‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAg                                                                                                                                           >  2:917343/1‑148 (MQ=255)
                  agatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaaa                                                                                                                                          >  2:412723/2‑146 (MQ=255)
                  agatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaaa                                                                                                                                          <  2:771795/147‑3 (MQ=255)
                  agatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaaa                                                                                                                                          >  2:1148935/2‑146 (MQ=255)
                  agatggtATAATAATAGAGTCGCCTATCCCTCAGGCGGCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaaa                                                                                                                                          <  1:410398/147‑3 (MQ=255)
                   gatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAAc                                                                                                                                         >  1:397814/1‑148 (MQ=255)
                    atgatATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GG‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGAc                                                                                                                                         <  1:935199/148‑1 (MQ=255)
                     tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGc                                                                                                                                       >  2:841748/4‑148 (MQ=255)
                     tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAA‑TA‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGc                                                                                                                                       <  1:1231139/145‑1 (MQ=255)
                     tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaaccgc                                                                                                                                       <  1:168259/145‑6 (MQ=255)
                     tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGc                                                                                                                                       >  1:666382/4‑148 (MQ=255)
                     tggtagaataatAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGc                                                                                                                                       <  1:866864/142‑1 (MQ=255)
                     gggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGc                                                                                                                                       <  1:430563/145‑1 (MQ=255)
                      ggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa                                                                                                                                      <  1:1147900/146‑1 (MQ=255)
                      ggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa                                                                                                                                      <  2:505444/146‑1 (MQ=255)
                        tataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑ac                                                                                                                                  >  1:391461/1‑147 (MQ=255)
                         ttaagaatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑aca                                                                                                                                 <  2:1006104/141‑3 (MQ=255)
                         ataataataGTGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑CTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑aca                                                                                                                                 <  2:1091120/148‑3 (MQ=255)
                         ataataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑aca                                                                                                                                 >  1:442724/1‑146 (MQ=255)
                          taataaTAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATCCTTATGGGCTTAGTAAACGCa‑‑acaa                                                                                                                                >  1:959047/1‑145 (MQ=255)
                          taataaTAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaa                                                                                                                                >  1:630392/1‑145 (MQ=255)
                          taataGTAGCGGCGCCTAGCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaa                                                                                                                                <  2:217369/148‑4 (MQ=255)
                           aataatAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaa                                                                                                                               >  2:534413/1‑144 (MQ=255)
                            ataatagAGCCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaat                                                                                                                              <  1:56384/144‑6 (MQ=255)
                            ataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaat                                                                                                                              <  1:113259/148‑6 (MQ=255)
                             tagtagAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GG‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑aa                                                                                                                            >  2:734681/1‑148 (MQ=255)
                             taatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCCTTTTAGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaata                                                                                                                             >  2:168839/4‑142 (MQ=255)
                             taatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaata                                                                                                                             >  2:861253/4‑142 (MQ=255)
                             taatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GACGTCCTTTTGCGTATTATACTTATTGGCTTCGTAACCGCa‑‑acaaata                                                                                                                             >  2:464341/4‑142 (MQ=255)
                             cagtagAGTCGCCAATCGCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GG‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑aa                                                                                                                            <  1:742239/147‑1 (MQ=255)
                              aatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTTCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaatat                                                                                                                            >  2:610836/3‑141 (MQ=255)
                              aatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataa                                                                                                                            <  2:786521/146‑8 (MQ=255)
                              aatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGGTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataa                                                                                                                            >  2:179239/3‑141 (MQ=255)
                              aaggcggTCGCATATCTCTCATGCGGCAA‑‑TCGACGAAGAGAGGAGGTGCA‑TTA‑CTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataa                                                                                                                            <  2:1176296/142‑8 (MQ=255)
                               atagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataat                                                                                                                           >  1:1109601/2‑140 (MQ=255)
                               atagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataat                                                                                                                           >  2:878768/2‑140 (MQ=255)
                               atagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataat                                                                                                                           >  2:900319/2‑140 (MQ=255)
                                tagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataatt                                                                                                                          >  1:1003038/1‑139 (MQ=255)
                                tagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataatt                                                                                                                          <  1:994809/148‑10 (MQ=255)
                                tagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataatt                                                                                                                          <  1:884538/148‑10 (MQ=255)
                                 agagTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GG‑TGATGCTTAGTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTCGGCGCA‑‑CAAC‑‑aa‑‑aagt                                                                                                                      >  1:199955/1‑146 (MQ=255)
                                 agagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaatgattt                                                                                                                         >  2:308008/1‑138 (MQ=255)
                                 agagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTACGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATGGGCTTAGTAAACGCa‑‑acaaataatta                                                                                                                         >  1:762646/1‑138 (MQ=255)
                                  gagTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GG‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAg                                                                                                                     >  1:1213024/1‑148 (MQ=255)
                                   agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TTCTAATCATTTTCGTTGTCATCATAGCACCAGTCATCAGTG‑GCTGTGATGTTGCGTATTGGACGTATTGTCTTAGTAAACGCa‑‑acaaatagttaat                                                                                                                       >  2:447031/1‑136 (MQ=255)
                                   agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataattaat                                                                                                                       >  2:1031279/1‑136 (MQ=255)
                                   agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataattaat                                                                                                                       >  1:1075974/1‑136 (MQ=255)
                                    gTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GG‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGt                                                                                                                   <  1:1191020/148‑1 (MQ=255)
                                    gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGTTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataattaata                                                                                                                      >  1:304603/1‑135 (MQ=255)
                                    gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataattaata                                                                                                                      >  2:1204172/1‑135 (MQ=255)
                                    gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACTT‑TGCTAATCATTTTCGTTCACATCATAGCACAAG‑CATTAGGGTGCTGGTCTGTTGCGTATTATACTTATTGGCTTAGTAGACGCa‑‑acaaataattacta                                                                                                                      >  1:591793/1‑135 (MQ=255)
                                     tCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataattaatag                                                                                                                     >  2:1132972/1‑134 (MQ=255)
                                               ctcAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GG‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑A‑TAT‑AGcc                                                                                                     >  1:132005/1‑148 (MQ=255)
                                                tcAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GG‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑g                                                                                                   <  2:959765/148‑1 (MQ=255)
                                                 cAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GG‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑Gc                                                                                                  >  2:1068707/1‑148 (MQ=255)
                                                                          gaggTGTA‑GAA‑GG‑TGCTGCTTCTGTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCg                                                                         <  2:326218/148‑1 (MQ=255)
                                                                                    aa‑GG‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTg                                                                <  2:16437/148‑1 (MQ=255)
                                                                                     a‑GG‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGa                                                               <  1:715243/148‑1 (MQ=255)
                                                                                        g‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GATGTGCCATTGCGTTTTTTTCTTTTTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAG‑A‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACGACCGCACATAGTGAgg                                                             >  2:75817/1‑148 (MQ=255)
                                                                                             tGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGAt                                                         <  2:354632/148‑1 (MQ=255)
                                                                                                         ttccaatcatAGCACCAGTCATCAGTG‑GCTGGGCTTTTGCGTATTATACTTATTGGCTTAGTAAACGCAACAAAT‑‑AATTAATAGGCGACTT‑TATAAGCCAGCATCGA‑AAAAATCCCCACACTACTGC‑AATAGTGTGGGGATTGgtgca                                                  <  1:532836/143‑3 (MQ=255)
                                                                                                          tCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCAACAAAT‑‑AATTAATAGGCGACTT‑TATAAGCCAGCATCGA‑AAAAATCCCCACACTACTGC‑AATAGTGTGGGGATTGgtgcat                                                 >  2:337843/1‑145 (MQ=255)
                                                                                                          tCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCAACAAAT‑‑AATTAATAGGCGAC‑TTTATAAGCCAGCATCGA‑AAAAATCCCCACACTACTGC‑AATAGTGTGGGGATTGGTGcat                                                 >  2:607197/1‑148 (MQ=255)
                                                                                                            acaTCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAAAAGTGAGGGGATTGGTGTATAAGTaaa                                          >  1:237413/1‑148 (MQ=255)
                                                                                                               tcatAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATAc                                       <  2:150492/148‑1 (MQ=255)
                                                                                                               tcatAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATAc                                       <  2:719673/148‑1 (MQ=255)
                                                                                                                 atAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCA‑‑ACAAATAATTAATAGGCGACTT‑TATAAGCCAGCATCGA‑AAAAATCCCCCCACTACTGC‑AATAGTGTGGGGATTGGTGgattaattgt                                          >  1:501538/1‑141 (MQ=255)
                                                                                                                     cACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTATATAAGTAAATACTTAttt                                 >  2:1254330/1‑148 (MQ=255)
                                                                                                                     cACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑GCACCAATAAAAATCACCTCACTACCGCCAATGGTGAGGGGGTGGGTGTATAAGTAAATACTTAttt                                 >  1:18527/1‑148 (MQ=255)
                                                                                                                                 gTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCATaa                     >  2:653618/1‑148 (MQ=255)
                                                                                                                                     gCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATta                  <  2:705159/148‑1 (MQ=255)
                                                                                                                                                     tttttCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑G‑TAT‑GACC‑GCTGCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGGCTTAATTATACTGGTAATTTTTCt  >  1:659699/1‑148 (MQ=255)
                                                                                                                                                       |                                                                                                                                                           
CTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GG‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCT  >  CP000730/1929781‑1930073

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑